* Package: sci-biology/ariadne-1.3-r1 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: elibc_glibc kernel_linux test userland_GNU x86 * FEATURES: sandbox test userpriv usersandbox >>> Unpacking source... >>> Unpacking ariadne-1.3.tar.Z to /var/tmp/portage/sci-biology/ariadne-1.3-r1/work * Applying ariadne-1.3-gcc4.patch ... [ ok ] >>> Source unpacked in /var/tmp/portage/sci-biology/ariadne-1.3-r1/work >>> Compiling source in /var/tmp/portage/sci-biology/ariadne-1.3-r1/work/SRC-1.3 ... make -j14 mkdir -p ./Linux i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/cl.o cl.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/searchpath.o searchpath.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/readline.o readline.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/seq_util.o seq_util.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/gaplib.o gaplib.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/cmp.o cmp.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/profile_util.o profile_util.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/profile_stat.o profile_stat.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/prospero_utils.o prospero_utils.c; i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/topalign.o topalign.c; profile_util.c: In function ‘ReadBinaryProfile’: profile_util.c:328:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:339:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:340:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:341:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:342:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:343:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:344:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:346:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:348:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:353:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c: In function ‘WriteBinaryProfile’: profile_util.c:278:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:279:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:280:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:281:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:282:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:283:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:284:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:285:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:286:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:287:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:294:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c: In function ‘ReadPreProcessedProfile’: profile_util.c:232:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:237:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c:250:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result profile_util.c: In function ‘WritePreProcessedProfile’: profile_util.c:199:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:200:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:201:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:202:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:203:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:204:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:205:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c:218:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result profile_util.c: In function ‘ReadProfile’: profile_util.c:66:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result profile_util.c:77:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result profile_util.c:88:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result seq_util.c: In function ‘compile_nbrf_index’: seq_util.c:881:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result seq_util.c:882:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result seq_util.c: In function ‘compile_fasta_index’: seq_util.c:844:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result seq_util.c: In function ‘compile_embl_index’: seq_util.c:795:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result ar rscuv ./Linux/libseq.a ./Linux/cl.o ./Linux/searchpath.o ./Linux/readline.o ./Linux/seq_util.o ./Linux/gaplib.o ./Linux/cmp.o ./Linux/profile_util.o ./Linux/profile_stat.o ./Linux/prospero_utils.o ./Linux/topalign.o; a - ./Linux/cl.o a - ./Linux/searchpath.o a - ./Linux/readline.o a - ./Linux/seq_util.o a - ./Linux/gaplib.o a - ./Linux/cmp.o a - ./Linux/profile_util.o a - ./Linux/profile_stat.o a - ./Linux/prospero_utils.o a - ./Linux/topalign.o i686-pc-linux-gnu-gcc -O2 -pipe -g -DLinux -I./Include/ -L./Linux -o ./Linux/ariadne ariadne.c -lseq -lm -lpthread i686-pc-linux-gnu-gcc -O2 -pipe -g -DLinux -I./Include/ -L./Linux -o ./Linux/prospero prospero.c -lseq -lm -lpthread prospero.c: In function ‘main’: prospero.c:63:3: warning: incompatible implicit declaration of built-in function ‘strcpy’ >>> Source compiled. >>> Test phase [none]: sci-biology/ariadne-1.3-r1 >>> Install ariadne-1.3-r1 into /var/tmp/portage/sci-biology/ariadne-1.3-r1/image/ category sci-biology >>> Completed installing ariadne-1.3-r1 into /var/tmp/portage/sci-biology/ariadne-1.3-r1/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/bin/ariadne usr/bin/prospero usr/lib/libseq.a * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/ariadne * /usr/bin/prospero * QA Notice: Package has poor programming practices which may compile * fine but exhibit random runtime failures. * prospero.c:63:3: warning: incompatible implicit declaration of built-in function ‘strcpy’ * Please do not file a Gentoo bug and instead report the above QA * issues directly to the upstream developers of this software. * Homepage: http://www.well.ox.ac.uk/ariadne/