Build log

ccp4-libs-6.1.3-r3:20101004-021641.log (text/plain), 270.55 KB, created by Diego Elio Pettenò (RETIRED) on 2010-10-04 12:53:44 UTC

 * Package:    sci-libs/ccp4-libs-6.1.3-r3
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
 * You need one of these Fortran Compilers: g77 gfortran ifc
 * Installed are:  gfortran ifort
>>> Unpacking source...
>>> Unpacking ccp4-6.1.3-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work
 * Applying patches for selected FORTRAN compiler: gfortran
>>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work
>>> Preparing source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ...
 * Applying upstream patches ...
 * Done.

 * Applying Gentoo patches ...
 *   6.1.3-dont-make-dirs-in-configure.patch ...
 [ ok ]
 *   6.0.2-ppc-double-define-gerror.patch ...
 [ ok ]
 *   6.1.3-ccif-shared.patch ...
 [ ok ]
 *   6.1.3-dont-build-mmdb.patch ...
 [ ok ]
 *   6.1.3-unbundle-libs.patch ...
 [ ok ]
 *   6.1.3-noinstall.patch ...
 [ ok ]
 * Done.

 * Using GNU config files from /usr/share/gnuconfig
 *   Updating x-windows/xdl_view/src/config.sub
 [ ok ]
 *   Updating x-windows/Mosflm/config.sub
 [ ok ]
 *   Updating x-windows/Mosflm/jpg/config.sub
 [ ok ]
 *   Updating x-windows/Mosflm/cbf/config.sub
 [ ok ]
 *   Updating x-windows/Rotgen/config.sub
 [ ok ]
 *   Updating x-windows/libjwc/libjwc_f/config.sub
 [ ok ]
 *   Updating x-windows/libjwc/libjwc_c/config.sub
 [ ok ]
 *   Updating lib/fftw/config.sub
 [ ok ]
 *   Updating lib/DiffractionImage/config.sub
 [ ok ]
 *   Updating lib/rxdispencer/config.sub
 [ ok ]
 *   Updating lib/ccif/config.sub
 [ ok ]
 *   Updating lib/clipper/config.sub
 [ ok ]
 *   Updating lib/ssm/config.sub
 [ ok ]
 *   Updating src/rapper/gc7.0/config.sub
 [ ok ]
 *   Updating src/rapper/gc7.0/libatomic_ops-1.2/config.sub
 [ ok ]
 *   Updating src/rapper/config.sub
 [ ok ]
 *   Updating src/rapper/libxml2/config.sub
 [ ok ]
 *   Updating src/clipper_progs/config.sub
 [ ok ]
 *   Updating src/pointless/config.sub
 [ ok ]
 *   Updating src/pisa/config.sub
 [ ok ]
 *   Updating x-windows/xdl_view/src/config.guess
 [ ok ]
 *   Updating x-windows/Mosflm/jpg/config.guess
 [ ok ]
 *   Updating x-windows/Mosflm/config.guess
 [ ok ]
 *   Updating x-windows/Mosflm/cbf/config.guess
 [ ok ]
 *   Updating x-windows/Rotgen/config.guess
 [ ok ]
 *   Updating x-windows/libjwc/libjwc_f/config.guess
 [ ok ]
 *   Updating x-windows/libjwc/libjwc_c/config.guess
 [ ok ]
 *   Updating lib/fftw/config.guess
 [ ok ]
 *   Updating lib/DiffractionImage/config.guess
 [ ok ]
 *   Updating lib/rxdispencer/config.guess
 [ ok ]
 *   Updating lib/ccif/config.guess
 [ ok ]
 *   Updating lib/clipper/config.guess
 [ ok ]
 *   Updating lib/ssm/config.guess
 [ ok ]
 *   Updating src/rapper/gc7.0/libatomic_ops-1.2/config.guess
 [ ok ]
 *   Updating src/rapper/gc7.0/config.guess
 [ ok ]
 *   Updating src/rapper/config.guess
 [ ok ]
 *   Updating src/rapper/libxml2/config.guess
 [ ok ]
 *   Updating src/clipper_progs/config.guess
 [ ok ]
 *   Updating src/pointless/config.guess
 [ ok ]
 *   Updating src/pisa/config.guess
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ...
with_fftw='/usr'
srcdir bindir libdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 /usr/libexec/ccp4/bin/ /usr/lib
OK, setting up for a system type of `linux'...

! onlylibs build requested
!
! Only the libraries will be configured and built.
! Configuration of x-windows programs, phaser and mapslicer
! command library have been implicitly disabled.
! (Some messages below regarding re-enabling these options
! are likely to be misleading.)

! Using gnu fortran compiler.  If you have an old fortran compiler, you may be better
! off using f2c, see --with-f2c option.

! The x-windows programs will not be installed.
! If you want the x-windows programs to be installed re-run
! configure with the --enable-x flag.

 The CCIF library will be built and installed.
 This has been tested on the most common systems, but if 
 you have problems, use the --disable-ccif flag.

 Installation of the CCTBX library has been suppressed.
 Some functionality will be lost.

 Installation of Phaser has been suppressed.

 The LAPACK linear algebra package will be included in the installation.
 Configure will search for existing LAPACK and BLAS libraries on
 on your system - if a version of LAPACK is not found then the NetLib
 version will be built for you automatically.
 If you want NetLib LAPACK and BLAS to be used regardless of
 system libraries then rerun configure using --with-netlib-lapack

 To disable inclusion of LAPACK, use the --disable-lapack flag
 (This is not recommended as some programs will fail to build)

 Building of the CCP4i MapSlicer command library has been suppressed.
 As a result you will not be able to use the MapSlicer viewer.
! You have specified a non-default Fortran compiler (gfortran).
  This probably only makes sense if you have made the appropriate
  changes to the Fortran-C interface routines.

testing linux ABI using: i686-pc-linux-gnu-gcc 
$ 32-bit

Testing Fortran90 support.
Fortran90 support confirmed (needed for latest Refmac and Molrep)
checking for ctime... 
 yes

 Testing command for running m4 (m4 -D_gfort=1) ... ok

Running separate configure for CCIF library.

Updating modification times for configuration files
Please wait...
...done.
configure: loading cache /tmp/22437.cache_file


     CCCCCC            CCCCCC         IIII      FFFFFFFFFF
   CCCCCCCCCC        CCCCCCCCCC       IIII      FFFFFFFFFF
  CC         C      CC         C       II       FF
  CC                CC                 II       FF
  CC                CC                 II       FFFFF
  CC                CC                 II       FFFFF
  CC                CC                 II       FF
  CC         C      CC         C       II       FF
   CCCCCCCCCC         CCCCCCCCC       IIII      FF
     CCCCCC             CCCCC         IIII      FF
  =======================================================

  Fortran programmers' tools for mmCIF

checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for function prototypes... yes
checking for ranlib... ranlib
checking for gawk... gawk
checking for nm... /usr/bin/nm
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking standards.h usability... no
checking standards.h presence... no
checking for standards.h... no
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking for unistd.h... checking for unistd.h... (cached) yes
yes
checking for an ANSI C-conforming const... yes
-------------------------------------------------
      Setting up system-dependent stuff
-------------------------------------------------
 
 
checking for standards.h... (cached) no
checking for working non-fixed mmap... yes
checking whether strdup declared in string.h... yes
-------------------------------------------------
       Regular expression package stuff
-------------------------------------------------
checking regex.h usability... yes
checking regex.h presence... yes
checking for regex.h... yes
checking out regular expression package... ok
 
-------------------------------------------------
*** Configuring CCIF build for shared library ***
-------------------------------------------------
 
-------------------------------------------------
    Checking for certain archaic features
-------------------------------------------------
 
checking whether we need to define strerror... no
checking for old-style realloc... no
checking for old BSD sprintf... no
 
configure: updating cache /tmp/22437.cache_file
configure: creating ./config.status
config.status: creating shlib.csh
config.status: creating shlib.sh
config.status: creating Makefile

Returning to main configure.


********* BLAS AND LAPACK CONFIGURATION ***********

Warning: this option has not been extensively tested!
Please report problems to [e-mail]

Guessing names for native/vendor LAPACK and/or BLAS libraries
on this system
Possible LAPACK library names for this system:
   liblapack

Searching for libraries with LAPACK and BLAS:
...nothing in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib
...nothing in /lib
...found LAPACK library: /usr/lib/liblapack.a
   Testing: try to link library against test program
gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlink testlink.f -L/usr/lib -llapack
Link ok - using liblapack from /usr/lib

   * Checking whether we need a separate BLAS library *
   Testing: try linking library against test program
gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlsame lsametst.f -L/usr/lib -llapack
Test program okay - additional separate BLAS not required
 Test C linking for lapack library
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -o testlink testlink.c -L/usr/lib -llapack
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp/ccEaRP8A.o: In function `main':
testlink.c:(.text+0x9c): undefined reference to `dsyev'
collect2: ld returned 1 exit status

Linking in LAPACK/BLAS using XLAPACK_LIB="-L/usr/lib -llapack"

***** BLAS AND LAPACK CONFIGURATION FINISHED *******

********* DIFFRACTION IMAGE LIBRARY CONFIGURATION ***********

Updating modification times for configuration files
Please wait...
...done.

configure  --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-tcl-module --with-pic
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for style of include used by make... GNU
checking for gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3
checking for gcc... (cached) i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether i686-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking dependency style of i686-pc-linux-gnu-gcc... (cached) gcc3
checking whether make sets $(MAKE)... (cached) yes
checking for ANSI C header files... (cached) yes
checking for python... python
checking /usr/include/python2.7/Python.h usability... yes
checking /usr/include/python2.7/Python.h presence... yes
checking for /usr/include/python2.7/Python.h... yes
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking /etc/java-config-2/current-system-vm/include/jni.h usability... yes
checking /etc/java-config-2/current-system-vm/include/jni.h presence... yes
checking for /etc/java-config-2/current-system-vm/include/jni.h... yes
checking for sqrt in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating MAR/Makefile
config.status: creating Rigaku/Makefile
config.status: creating Bruker/Makefile
config.status: executing depfiles commands

***** DIFFRACTION IMAGE LIBRARY CONFIGURATION FINISHED *******


********* SSM CONFIGURATION ***********

Updating modification times for configuration files
Please wait...
...done.

configure --enable-shared=yes --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ccp4=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for style of include used by make... GNU
checking for gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3
checking for ANSI C header files... (cached) yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for CMMDBManager in MMDB... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for sqrt in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands

***** SSM CONFIGURATION FINISHED *******


********* RAPPER CONFIGURATION ***********

Updating modification times for configuration files
Please wait...
...done.

configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --disable-shared
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking for gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking bstring.h usability... no
checking bstring.h presence... no
checking for bstring.h... no
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if i686-pc-linux-gnu-gcc static flag  works... yes
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
configure: creating ./config.status
config.status: creating Makefile
config.status: WARNING:  Makefile.in seems to ignore the --datarootdir setting
config.status: creating LOOP/Makefile
config.status: WARNING:  LOOP/Makefile.in seems to ignore the --datarootdir setting
config.status: creating data/Makefile
config.status: WARNING:  data/Makefile.in seems to ignore the --datarootdir setting
config.status: executing depfiles commands
=== configuring in gc7.0 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/gc7.0)
configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3'  '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe   -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking GC version numbers... major=7 minor=0 
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for style of include used by make... GNU
checking for gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking for ar... ar
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking for thread model used by GCC... posix
configure: WARNING: "Explict GC_INIT() calls may be required."
checking for xlc... no
checking for dlopen in -ldl... yes
checking whether to build shared libraries... yes
checking which machine-dependent code should be used... 
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... (cached) ar
checking for ranlib... (cached) ranlib
checking for strip... strip
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking sys/dg_sys_info.h usability... no
checking sys/dg_sys_info.h presence... no
checking for sys/dg_sys_info.h... no
checking whether Solaris gcc optimization fix is necessary... no
checking atomic_ops.h usability... yes
checking atomic_ops.h presence... yes
checking for atomic_ops.h... yes
configure: Using pre-installed libatomic_ops
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bdw-gc.pc
config.status: executing depfiles commands
config.status: executing default commands
=== configuring in libxml2 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/libxml2)
configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3'  '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe   -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for rm... /bin/rm
checking for mv... /bin/mv
checking for tar... /bin/tar
checking for perl... /usr/bin/perl
checking for xmllint... /usr/bin/xmllint
checking for xsltproc... /usr/bin/xsltproc
checking for function prototypes... yes
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
Checking zlib
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzread in -lz... yes
Checking headers
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for unistd.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ansidecl.h usability... yes
checking ansidecl.h presence... yes
checking for ansidecl.h... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking nan.h usability... no
checking nan.h presence... no
checking for nan.h... no
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking fp_class.h usability... no
checking fp_class.h presence... no
checking for fp_class.h... no
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for stdlib.h... (cached) yes
checking for sys/socket.h... yes
checking for netinet/in.h... yes
checking for arpa/inet.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/timeb.h usability... yes
checking sys/timeb.h presence... yes
checking for sys/timeb.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for arpa/nameser.h... yes
checking for resolv.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
Checking libraries
checking for strftime... yes
checking for strdup... yes
checking for strndup... yes
checking for strerror... yes
checking for finite... yes
checking for isnand... no
checking for fp_class... no
checking for class... no
checking for fpclass... no
checking for strftime... (cached) yes
checking for localtime... yes
checking for gettimeofday... yes
checking for ftime... yes
checking for stat... yes
checking for _stat... no
checking for signal... yes
checking for printf... yes
checking for sprintf... yes
checking for fprintf... yes
checking for snprintf... yes
checking for vfprintf... yes
checking for vsprintf... yes
checking for vsnprintf... yes
checking for sscanf... yes
checking for va_copy... yes
checking for library containing gethostent... none required
checking for library containing setsockopt... none required
checking for library containing connect... none required
checking for type of socket length (socklen_t)... socklen_t *
checking whether to enable IPv6... yes
checking struct sockaddr::ss_family... yes
checking for getaddrinfo... yes
checking for isnan... yes
checking for isinf... yes
checking for python... /usr/bin/python
Found Python version 2.7
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
Checking configuration requirements
Enabling multithreaded support
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_join in -lpthread... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
Enabled Schematron support
Enabled Schemas/Relax-NG support
configure: creating ./config.status
config.status: creating libxml2.spec
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/libxml/Makefile
config.status: creating doc/Makefile
config.status: creating doc/examples/Makefile
config.status: creating doc/devhelp/Makefile
config.status: creating example/Makefile
config.status: creating python/Makefile
config.status: creating python/tests/Makefile
config.status: creating xstc/Makefile
config.status: creating include/libxml/xmlversion.h
config.status: creating xml2-config
config.status: creating libxml-2.0.pc
config.status: creating libxml-2.0-uninstalled.pc
config.status: creating python/setup.py
config.status: creating config.h
config.status: executing depfiles commands
Done configuring

***** RAPPER CONFIGURATION FINISHED *******


********* PISA CONFIGURATION ***********

Updating modification times for configuration files
Please wait...
...done.

configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ssm=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for sqrt in -lm... yes
checking for CMMDBManager in MMDB... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb
checking for CSSMAlign in SSM... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib -lssm headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pisastore/Makefile
config.status: creating molref/Makefile
config.status: creating sbase/Makefile
config.status: creating doc/Makefile
config.status: creating pisa.cfg
config.status: executing depfiles commands

***** PISA CONFIGURATION FINISHED *******


 Building of the RCSB PDB_EXTRACT suite has been suppressed.
 As a result you will not be able to use the PDB_EXTRACT programs.

The configuration can be re-built by executing config.status :

#!/bin/sh
# (Generated automatically by configure)
# CCP4 was configured as follows:
libdir="/usr/lib"		RANLIB="ranlib" \
FC="gfortran"			FOPTIM="-O2 -pipe" \
COPTIM="-O2 -pipe"		XFFLAGS="-fno-second-underscore -fno-stack-protector -fPIC" \
XCFLAGS="-DGFORTRAN -DPROTOTYPE -fPIC"	 	CC="i686-pc-linux-gnu-gcc" \
LNS="ln -s"			M4="m4 -D_gfort=1" \
XCXXFLAGS="  -fPIC"	 	CXX="i686-pc-linux-gnu-g++" \
CXXOPTIM="-O2 -pipe"   \
M4FLAGS=""		SETFLAGS="lgglib_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' arp_waters_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O2 -pipe -fforce-mem'  " \
MAKE="make"			F="f"       \
INSTALL_PROGRAM="cp -p"	INSTALL_DATA="cp -p" \
XLDFLAGS=" -lm" \
SHARE_LIB="		i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so ${CORELIBOBJS} ${CGENERALOBJS} ${CUCOBJS} ${CMTZOBJS} ${CMAPOBJS} ${CSYMOBJS} -L../ccif/ -lccif  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && 		gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so ${FORTRANLOBJS} ${FINTERFACEOBJS} -L../ccif/ -lccif -L. -lccp4c -lmmdb  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm" \
SHARED_LIB_CFLAGS='' \
SHARED_LIB_FFLAGS="" \
SHARE_INST="$(INSTALL_DATA) `pwd`/libmmdb.so $(DESTDIR)/$(libdir)/libmmdb.so; $(INSTALL_DATA) `pwd`/libccp4c.so $(DESTDIR)/$(libdir)/libccp4c.so; $(INSTALL_DATA) `pwd`/libccp4f.so $(DESTDIR)/$(libdir)/libccp4f.so; " \
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/configure --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib  --onlylibs --with-shared-libs --tmpdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp --disable-x --disable-cctbx --disable-phaser --disable-mapslicer --enable-ssm --disable-clipper --disable-fftw --with-fftw=/usr --with-warnings --disable-pdb_extract linux -hush

>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ...
make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ onlylib 
if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/lapack; \
   make  ; else true; fi
if test -n "lib/ccif"; then cd lib/ccif; \
   make  ; else true; fi
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
gawk -f ./condition.awk ./condition.list
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o condition.o ./condition.c && \
ar r libccif.a condition.o && true
ar: creating libccif.a
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_map.o ./star_map.c &&\
ar r libccif.a star_map.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc  -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o ccif_unix.o ./ccif_unix.c && \
ar r libccif.a ccif_unix.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o sym.o ./sym.c && \
ar r libccif.a sym.o && true
./sym.c: In function ‘zzs_undump’:
./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:860:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:861:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:862:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:863:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:864:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:894:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c:901:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
./sym.c: In function ‘zzs_dump’:
./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:730:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:731:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:732:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:733:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:734:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:735:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
./sym.c:762:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o sorlist.o ./sorlist.c && \
ar r libccif.a sorlist.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  ./scanf_ansi.c -o scanf_ansi
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_scan.o ./star_scan.c -DPTR_FROM_TEXT=`./scanf_test` && \
ar r libccif.a star_scan.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_err.o ./star_err.c && \
ar r libccif.a star_err.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o value_manip.o ./value_manip.c && \
ar r libccif.a value_manip.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o context.o ./context.c && \
ar r libccif.a context.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o struct_manip.o ./struct_manip.c && \
ar r libccif.a struct_manip.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o f_interface.o ./f_interface.c && \
ar r libccif.a f_interface.o && true
In file included from /usr/include/string.h:642:0,
                 from ./library.h:166,
                 from ./stdpccts.h:42,
                 from ./f_interface.c:27:
In function ‘strncpy’,
    inlined from ‘ccif_block_by_index_’ at ./f_interface.c:4072:11:
/usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_walk.o ./star_walk.c && \
ar r libccif.a star_walk.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_print.o -D_refvar_inits=star_print_refvar_inits ./star_print.c && \
ar r libccif.a star_print.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o star_graph.o -D_refvar_inits=star_dot_refvar_inits ./star_graph.c && \
ar r libccif.a star_graph.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o lib_dict2tab.o -D_refvar_inits=_dict_refvar_inits \
./lib_dict2tab.c && \
ar r libccif.a lib_dict2tab.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o sort.o ./sort.c && \
ar r libccif.a sort.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o list.o ./list.c && \
ar r libccif.a list.o && true
ranlib libccif.a
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -fPIC -o rb.o ./rb.c && \
ar r libccif.a rb.o && true
./rb.c: In function ‘rb_print_tree’:
./rb.c:446:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
./rb.c: In function ‘rb_iprint_tree’:
./rb.c:471:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 4 has type ‘struct rb_node *’
./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
ranlib libccif.a
if ( test ! -f ./strtod.c ); then touch ./strtod.c; fi
if (test -s ./strtod.c -a -r ./strtod.c) ; \
   then \
      i686-pc-linux-gnu-gcc -c ./strtod.c && ar r libccif.a strtod.o; \
      ranlib libccif.a ; rm -f strtod.o; \
   else \
      touch libccif.a ; \
fi
if test -f /librx.a; then \
  rm -rf rx.dir; mkdir rx.dir; \
  echo 'rxdispencer routines being added to library'; \
  cp /librx.a rx.dir; cd rx.dir; \
          ar -x librx.a; cd ..; \
  ar r libccif.a rx.dir/*.o; \
  ranlib libccif.a; rm -rf rx.dir; \
fi
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so  condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o  -o libccif.so -lm
i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  ./cifdic_to_symtab.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm  
 
Building symbol table:
LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out
Loading dictionary....dictionary loaded.
Starting first tree walk....tree walk completed.
Starting second tree walk....tree walk completed.
Grouping items in their categories....done
Dumping symbol table....symbol table dumped.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
cd lib/src; make  
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
test ! -x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit && i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -o /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit fsplit.c || true 
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_err.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_file.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_utils.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_array.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cvecmat.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_program.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c: In function ‘ccperror’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c:98:3: warning: passing argument 2 of ‘ccp4InvokeCallback’ discards qualifiers from pointer target type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_program.h:128:5: note: expected ‘char *’ but argument is of type ‘const char *’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_accessor.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_close.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_data.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_header.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_labels.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_open.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_skew.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_stats.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_symop.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib.o .o`.c
ar r ./libccp4c.a library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o
ar: creating ./libccp4c.a
ranlib libccp4c.a
rm -rf parser.dir; mkdir parser.dir
cd parser.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/parser.f && rm -f ZZZ*.f zzz*.f;
keynum.f
keyerr.f
gtnrea.f
gtnint.f
gtprea.f
gtpint.f
sblank.f
cmatch.f
chkkey.f
putlin.f
blank.f
lerror.f
rdsymm.f
rdhead.f
rdcell.f
rdreso.f
rdscal.f
rdresl.f
gttrea.f
gttint.f
rdatomselect.f
if test ! -f parser.dir/parser.f; then \
  echo '      SUBROUTINE PRSER' > parser.dir/parser.f; \
  echo '      END' >> parser.dir/parser.f; \
fi
cd parser.dir && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
ar: creating .././libccp4f.a
rm -rf fftlib.dir; mkdir fftlib.dir
echo '      SUBROUTINE FFTLIB' > fftlib.dir/fftlib.f
echo '      END' >> fftlib.dir/fftlib.f
cd fftlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fftlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done \
  && ar r .././libccp4f.a *.o
rm -rf lgglib.dir; mkdir lgglib.dir
echo '      SUBROUTINE LGGLIB' > lgglib.dir/lgglib.f
echo '      END' >> lgglib.dir/lgglib.f
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb1.f:29.72:

     1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)                         
                                                                        1
Warning: Branch at (1) may result in an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb2.f:31.72:

     1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)                         
                                                                        1
Warning: Branch at (1) may result in an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb3.f:31.72:

     1  res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm)               
                                                                        1
Warning: Branch at (1) may result in an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdbca.f:24.72:

     1 , (X(I,NATM),I=1,3)                                              
                                                                        1
Warning: Branch at (1) may result in an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb.f:23.72:

     1 , (X(I,NATM),I=1,3)                                              
                                                                        1
Warning: Branch at (1) may result in an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getrdi.f:25.72:

     1 SEQ(NATM), RES(NATM), ATOM(NATM)                                 
                                                                        1
Warning: Branch at (1) may result in an infinite loop
rm -rf libhtml.dir; mkdir libhtml.dir
echo '      SUBROUTINE LIBHTML' > libhtml.dir/libhtml.f
echo '      END' >> libhtml.dir/libhtml.f
cd libhtml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libhtml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf modlib.dir; mkdir modlib.dir
echo '      SUBROUTINE MODLIB' > modlib.dir/modlib.f
echo '      END' >> modlib.dir/modlib.f
cd modlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/modlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf plotsubs.dir; mkdir plotsubs.dir
echo '      SUBROUTINE PLOTSUBS' > plotsubs.dir/plotsubs.f
echo '      END' >> plotsubs.dir/plotsubs.f
cd plotsubs.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plotsubs.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf plot84lib.dir; mkdir plot84lib.dir
echo '      SUBROUTINE PLOT84LIB' > plot84lib.dir/plot84lib.f
echo '      END' >> plot84lib.dir/plot84lib.f
cd plot84lib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plot84lib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf pxxml.dir; mkdir pxxml.dir
echo '      SUBROUTINE PXXML' > pxxml.dir/pxxml.f
echo '      END' >> pxxml.dir/pxxml.f
cd pxxml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pxxml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf ccplib.dir; mkdir ccplib.dir
echo '      SUBROUTINE CCPLIB' > ccplib.dir/ccplib.f
echo '      END' >> ccplib.dir/ccplib.f
cd ccplib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccplib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
m4 -D_gfort=1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/unix.m4 >unix.f
rm -rf unix.dir; mkdir unix.dir
echo '      SUBROUTINE UNIX' > unix.dir/unix.f
echo '      END' >> unix.dir/unix.f
cd unix.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit ../unix.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf rwbrook.dir; mkdir rwbrook.dir
echo '      SUBROUTINE RWBROOK' > rwbrook.dir/rwbrook.f
echo '      END' >> rwbrook.dir/rwbrook.f
cd rwbrook.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/rwbrook.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
rm -rf cciflib.dir; mkdir cciflib.dir
echo '      SUBROUTINE CCIFLIB' > cciflib.dir/cciflib.f
echo '      END' >> cciflib.dir/cciflib.f
cd cciflib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cciflib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\
  && ar r .././libccp4f.a *.o
rm -rf harvlib.dir; mkdir harvlib.dir
echo '      SUBROUTINE HARVLIB' > harvlib.dir/harvlib.f
echo '      END' >> harvlib.dir/harvlib.f
if test -n "lib/ccif" ; then cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harvlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\
  && ar r .././libccp4f.a *.o ; else \
cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harv_dummy.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
  gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\
  && ar r .././libccp4f.a *.o ; fi
rm -rf keyparse.dir; mkdir keyparse.dir
echo '      SUBROUTINE KEYPARSE' > keyparse.dir/keyparse.f
echo '      END' >> keyparse.dir/keyparse.f
cd keyparse.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/keyparse.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_f.f && ar r ./libccp4f.a pack_f.o
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘v2pack_chunk’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:901:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:910:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘pack_chunk’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:852:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:860:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
ar r ./libccp4f.a pack_c.o
rm -rf dna_output.dir; mkdir dna_output.dir
echo '      SUBROUTINE DNA_OUTPUT' > dna_output.dir/dna_output.f
echo '      END' >> dna_output.dir/dna_output.f
cd dna_output.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/dna_output.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
  for i in `pwd`/*.f; do \
    gfortran -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC  $i; done\
  && ar r .././libccp4f.a *.o
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrhist_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:275:2: warning: passing argument 2 of ‘ccp4_lrhist’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:662:5: note: expected ‘char (*)[80]’ but argument is of type ‘fpstr’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyin_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:602:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyout_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:656:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyset_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 4 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘char (*)[2][31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrassn_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 2 of ‘ccp4_lrassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 4 of ‘ccp4_lrassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘char (*)[3]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrreff_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1180:14: warning: passing argument 5 of ‘ccp4_lrreff’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:787:5: note: expected ‘const struct MTZCOL **’ but argument is of type ‘struct MTZCOL **’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhist_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1777:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘fpstr’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhstl_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1829:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwassn_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwclab_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr3_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:341:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr4_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:377:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘calc_orig_ps_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:1684:3: warning: passing argument 3 of ‘ccp4spg_generate_origins’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib.h:579:5: note: expected ‘const float (*)[4][4]’ but argument is of type ‘float (*)[4][4]’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser_f.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘ltime_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:799:3: warning: passing argument 1 of ‘localtime_r’ makes pointer from integer without a cast
/usr/include/time.h:248:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘gmtime_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:832:3: warning: passing argument 1 of ‘gmtime_r’ makes pointer from integer without a cast
/usr/include/time.h:243:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_diskio_f.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general_f.o .o`.c
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orth_to_frac_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:86:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_frac_to_orth_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:105:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orthu_to_fracu_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:124:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_fracu_to_orthu_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:143:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmaplib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ioArrayPrint’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:91:5: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:97:3: warning: passing argument 1 of ‘free’ discards qualifiers from pointer target type
/usr/include/stdlib.h:488:13: note: expected ‘void *’ but argument is of type ‘const char *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘msywrt_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1154:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ccp4_map_write_symm_matrix_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1181:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename binsortint.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c: In function ‘srtbeg_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:160:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:161:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC  -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename hybrid_36_f.o .o`.c
ar r ./libccp4f.a cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o
ranlib libccp4f.a
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o  library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o  -L../ccif/ -lccif  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && 		gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o  parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/fftw; \
make -i   install; else true; fi ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3'
for i in   lib/DiffractionImage  lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i  ; do (if test -f $i/Makefile; then \
  if test $i = x-windows; then \
    cd $i; make -i -w install; \
  else cd $i; make -w  install; fi; \
else true; fi) ; done
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
Making install in Bruker
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
/bin/sh ../libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c -o FrmRoutines.lo FrmRoutines.cpp
mkdir .libs
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp  -fPIC -DPIC -o .libs/FrmRoutines.o
FrmRoutines.cpp: In function 'long int* ReadFrameFile(char*, FRM_HEADER*)':
FrmRoutines.cpp:91:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:97:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:114:60: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:116:85: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:132:88: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:149:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:161:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:173:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:197:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
FrmRoutines.cpp:199:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:215:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
FrmRoutines.cpp:217:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:244:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp: In function 'long int SaveFrameFile(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 3 has type 'INT64*'
FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 4 has type 'INT64*'
FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 5 has type 'INT64*'
FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 6 has type 'INT64*'
FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 7 has type 'INT64*'
FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 3 has type 'INT64'
FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 4 has type 'INT64'
FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 5 has type 'INT64'
FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 6 has type 'INT64'
FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 7 has type 'INT64'
FrmRoutines.cpp: In function 'long int SaveFrameFile_Old(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:448:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:448:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
FrmRoutines.cpp:457:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:461:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:482:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:482:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
FrmRoutines.cpp:491:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:495:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:501:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:505:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:522:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:543:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:559:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:566:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:578:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:585:82: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:592:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp: In function 'long int SaveFrameFile_New(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:634:43: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:873:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:880:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:892:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:900:87: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:910:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:920:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:928:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp  -fPIC -DPIC -o FrmRoutines.o >/dev/null 2>&1
mv -f .deps/FrmRoutines.Tpo .deps/FrmRoutines.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c -o FRM_LIB.lo FRM_LIB.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c  -fPIC -DPIC -o .libs/FRM_LIB.o
FRM_LIB.c: In function 'frm_open_file':
FRM_LIB.c:134:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
FRM_LIB.c: In function 'frm_shrink':
FRM_LIB.c:589:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:591:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c: In function 'frm_convert_header_longs':
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 4 has type 'long int *'
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 5 has type 'long int *'
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 6 has type 'long int *'
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 7 has type 'long int *'
FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 8 has type 'long int *'
FRM_LIB.c:629:13: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c: In function 'frm_convert_header':
FRM_LIB.c:797:9: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
FRM_LIB.c: In function 'frm_trim':
FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1021:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1023:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c: In function 'frm_truncate':
FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1106:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1108:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c: In function 'frm_reorientate':
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c  -fPIC -DPIC -o FRM_LIB.o >/dev/null 2>&1
mv -f .deps/FRM_LIB.Tpo .deps/FRM_LIB.Plo
/bin/sh ../libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -static  -o libbruker.la  FrmRoutines.lo FRM_LIB.lo  -lm 
ar cru .libs/libbruker.a  FrmRoutines.o FRM_LIB.o
ranlib .libs/libbruker.a
creating libbruker.la
(cd .libs && rm -f libbruker.la && ln -s ../libbruker.la libbruker.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
Making install in MAR
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c -o mar300_header.lo mar300_header.c
mkdir .libs
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c  -fPIC -DPIC -o .libs/mar300_header.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c  -fPIC -DPIC -o mar300_header.o >/dev/null 2>&1
mv -f .deps/mar300_header.Tpo .deps/mar300_header.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c -o mar345_header.lo mar345_header.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c  -fPIC -DPIC -o .libs/mar345_header.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c  -fPIC -DPIC -o mar345_header.o >/dev/null 2>&1
mv -f .deps/mar345_header.Tpo .deps/mar345_header.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c -o marcif.lo marcif.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c  -fPIC -DPIC -o .libs/marcif.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c  -fPIC -DPIC -o marcif.o >/dev/null 2>&1
mv -f .deps/marcif.Tpo .deps/marcif.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c -o nb_header.lo nb_header.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c  -fPIC -DPIC -o .libs/nb_header.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c  -fPIC -DPIC -o nb_header.o >/dev/null 2>&1
mv -f .deps/nb_header.Tpo .deps/nb_header.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c  -fPIC -DPIC -o .libs/swap.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c  -fPIC -DPIC -o swap.o >/dev/null 2>&1
mv -f .deps/swap.Tpo .deps/swap.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c  -fPIC -DPIC -o .libs/utils.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c  -fPIC -DPIC -o utils.o >/dev/null 2>&1
mv -f .deps/utils.Tpo .deps/utils.Plo
/bin/sh ../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c -o pck.lo pck.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c  -fPIC -DPIC -o .libs/pck.o
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c  -fPIC -DPIC -o pck.o >/dev/null 2>&1
mv -f .deps/pck.Tpo .deps/pck.Plo
/bin/sh ../libtool --tag=CC   --mode=link i686-pc-linux-gnu-gcc  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -static  -o libmar.la  mar300_header.lo mar345_header.lo marcif.lo nb_header.lo swap.lo utils.lo pck.lo  -lm 
ar cru .libs/libmar.a  mar300_header.o mar345_header.o marcif.o nb_header.o swap.o utils.o pck.o
ranlib .libs/libmar.a
creating libmar.la
(cd .libs && rm -f libmar.la && ln -s ../libmar.la libmar.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
Making install in Rigaku
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
/bin/sh ../libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.   -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c -o ReadRAXISImages.lo ReadRAXISImages.cpp
mkdir .libs
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp  -fPIC -DPIC -o .libs/ReadRAXISImages.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp  -fPIC -DPIC -o ReadRAXISImages.o >/dev/null 2>&1
mv -f .deps/ReadRAXISImages.Tpo .deps/ReadRAXISImages.Plo
/bin/sh ../libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -static  -o librigaku.la  ReadRAXISImages.lo  -lm 
ar cru .libs/librigaku.a  ReadRAXISImages.o
ranlib .libs/librigaku.a
creating librigaku.la
(cd .libs && rm -f librigaku.la && ln -s ../librigaku.la librigaku.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c -o DiffractionImageJpeg.lo DiffractionImageJpeg.cpp
mkdir .libs
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp  -fPIC -DPIC -o .libs/DiffractionImageJpeg.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp  -fPIC -DPIC -o DiffractionImageJpeg.o >/dev/null 2>&1
mv -f .deps/DiffractionImageJpeg.Tpo .deps/DiffractionImageJpeg.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c -o DiffractionImageADSC.lo DiffractionImageADSC.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp  -fPIC -DPIC -o .libs/DiffractionImageADSC.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp  -fPIC -DPIC -o DiffractionImageADSC.o >/dev/null 2>&1
mv -f .deps/DiffractionImageADSC.Tpo .deps/DiffractionImageADSC.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c -o DiffractionImageCBF.lo DiffractionImageCBF.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp  -fPIC -DPIC -o .libs/DiffractionImageCBF.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp  -fPIC -DPIC -o DiffractionImageCBF.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCBF.Tpo .deps/DiffractionImageCBF.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c -o DiffractionImageMAR.lo DiffractionImageMAR.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp  -fPIC -DPIC -o .libs/DiffractionImageMAR.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp  -fPIC -DPIC -o DiffractionImageMAR.o >/dev/null 2>&1
mv -f .deps/DiffractionImageMAR.Tpo .deps/DiffractionImageMAR.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c -o DiffractionImageRAXIS.lo DiffractionImageRAXIS.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp  -fPIC -DPIC -o .libs/DiffractionImageRAXIS.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp  -fPIC -DPIC -o DiffractionImageRAXIS.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRAXIS.Tpo .deps/DiffractionImageRAXIS.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c -o DiffractionImageRaxisDtrek.lo DiffractionImageRaxisDtrek.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp  -fPIC -DPIC -o .libs/DiffractionImageRaxisDtrek.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp  -fPIC -DPIC -o DiffractionImageRaxisDtrek.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRaxisDtrek.Tpo .deps/DiffractionImageRaxisDtrek.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c -o DiffractionImageSaturn.lo DiffractionImageSaturn.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp  -fPIC -DPIC -o .libs/DiffractionImageSaturn.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp  -fPIC -DPIC -o DiffractionImageSaturn.o >/dev/null 2>&1
mv -f .deps/DiffractionImageSaturn.Tpo .deps/DiffractionImageSaturn.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c -o DiffractionImageBruker.lo DiffractionImageBruker.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp  -fPIC -DPIC -o .libs/DiffractionImageBruker.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp  -fPIC -DPIC -o DiffractionImageBruker.o >/dev/null 2>&1
mv -f .deps/DiffractionImageBruker.Tpo .deps/DiffractionImageBruker.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c -o DiffractionImageOxford.lo DiffractionImageOxford.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp  -fPIC -DPIC -o .libs/DiffractionImageOxford.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp  -fPIC -DPIC -o DiffractionImageOxford.o >/dev/null 2>&1
mv -f .deps/DiffractionImageOxford.Tpo .deps/DiffractionImageOxford.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c -o DiffractionImageTiff.lo DiffractionImageTiff.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp  -fPIC -DPIC -o .libs/DiffractionImageTiff.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp  -fPIC -DPIC -o DiffractionImageTiff.o >/dev/null 2>&1
mv -f .deps/DiffractionImageTiff.Tpo .deps/DiffractionImageTiff.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c -o DiffractionImage.lo DiffractionImage.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp  -fPIC -DPIC -o .libs/DiffractionImage.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp  -fPIC -DPIC -o DiffractionImage.o >/dev/null 2>&1
mv -f .deps/DiffractionImage.Tpo .deps/DiffractionImage.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c -o DiffractionImageRaw.lo DiffractionImageRaw.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp  -fPIC -DPIC -o .libs/DiffractionImageRaw.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp  -fPIC -DPIC -o DiffractionImageRaw.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRaw.Tpo .deps/DiffractionImageRaw.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c -o DiffractionImageUtility.lo DiffractionImageUtility.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp  -fPIC -DPIC -o .libs/DiffractionImageUtility.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp  -fPIC -DPIC -o DiffractionImageUtility.o >/dev/null 2>&1
mv -f .deps/DiffractionImageUtility.Tpo .deps/DiffractionImageUtility.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c -o DiffractionImageCalculations.lo DiffractionImageCalculations.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp  -fPIC -DPIC -o .libs/DiffractionImageCalculations.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp  -fPIC -DPIC -o DiffractionImageCalculations.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCalculations.Tpo .deps/DiffractionImageCalculations.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c -o DiffractionImageImgOperations.lo DiffractionImageImgOperations.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp  -fPIC -DPIC -o .libs/DiffractionImageImgOperations.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp  -fPIC -DPIC -o DiffractionImageImgOperations.o >/dev/null 2>&1
mv -f .deps/DiffractionImageImgOperations.Tpo .deps/DiffractionImageImgOperations.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c -o DiffractionImageException.lo DiffractionImageException.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp  -fPIC -DPIC -o .libs/DiffractionImageException.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp  -fPIC -DPIC -o DiffractionImageException.o >/dev/null 2>&1
mv -f .deps/DiffractionImageException.Tpo .deps/DiffractionImageException.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c -o DiffractionImageCompare.lo DiffractionImageCompare.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp  -fPIC -DPIC -o .libs/DiffractionImageCompare.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp  -fPIC -DPIC -o DiffractionImageCompare.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCompare.Tpo .deps/DiffractionImageCompare.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c -o DiffractionImageAutomask.lo DiffractionImageAutomask.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp  -fPIC -DPIC -o .libs/DiffractionImageAutomask.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp  -fPIC -DPIC -o DiffractionImageAutomask.o >/dev/null 2>&1
mv -f .deps/DiffractionImageAutomask.Tpo .deps/DiffractionImageAutomask.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c -o Profile.lo Profile.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp  -fPIC -DPIC -o .libs/Profile.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp  -fPIC -DPIC -o Profile.o >/dev/null 2>&1
mv -f .deps/Profile.Tpo .deps/Profile.Plo
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c -o Peak.lo Peak.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp  -fPIC -DPIC -o .libs/Peak.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp  -fPIC -DPIC -o Peak.o >/dev/null 2>&1
mv -f .deps/Peak.Tpo .deps/Peak.Plo
/bin/sh ./libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c -o dps_peaksearch_cn.lo dps_peaksearch_cn.c
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c  -fPIC -DPIC -o .libs/dps_peaksearch_cn.o
dps_peaksearch_cn.c: In function 'dps_peaksearch_cn':
dps_peaksearch_cn.c:403:2: warning: passing argument 4 of 'qsort' from incompatible pointer type
/usr/include/stdlib.h:761:13: note: expected '__compar_fn_t' but argument is of type 'int (*)(struct DPS_Peak *, struct DPS_Peak *)'
 i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c  -fPIC -DPIC -o dps_peaksearch_cn.o >/dev/null 2>&1
mv -f .deps/dps_peaksearch_cn.Tpo .deps/dps_peaksearch_cn.Plo
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -static  -o libDiffImage.la -rpath /usr/lib DiffractionImageJpeg.lo DiffractionImageADSC.lo DiffractionImageCBF.lo DiffractionImageMAR.lo DiffractionImageRAXIS.lo DiffractionImageRaxisDtrek.lo DiffractionImageSaturn.lo DiffractionImageBruker.lo DiffractionImageOxford.lo DiffractionImageTiff.lo DiffractionImage.lo DiffractionImageRaw.lo DiffractionImageUtility.lo DiffractionImageCalculations.lo DiffractionImageImgOperations.lo DiffractionImageException.lo DiffractionImageCompare.lo DiffractionImageAutomask.lo Profile.lo Peak.lo dps_peaksearch_cn.lo  -lm 
ar cru .libs/libDiffImage.a  DiffractionImageJpeg.o DiffractionImageADSC.o DiffractionImageCBF.o DiffractionImageMAR.o DiffractionImageRAXIS.o DiffractionImageRaxisDtrek.o DiffractionImageSaturn.o DiffractionImageBruker.o DiffractionImageOxford.o DiffractionImageTiff.o DiffractionImage.o DiffractionImageRaw.o DiffractionImageUtility.o DiffractionImageCalculations.o DiffractionImageImgOperations.o DiffractionImageException.o DiffractionImageCompare.o DiffractionImageAutomask.o Profile.o Peak.o dps_peaksearch_cn.o
ranlib .libs/libDiffImage.a
creating libDiffImage.la
(cd .libs && rm -f libDiffImage.la && ln -s ../libDiffImage.la libDiffImage.la)
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c -o DiffractionImagePythonInterface.lo DiffractionImagePythonInterface.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp  -fPIC -DPIC -o .libs/DiffractionImagePythonInterface.o
DiffractionImagePythonInterface.cpp: In function 'void SWIG_Python_AddErrorMsg(const char*)':
DiffractionImagePythonInterface.cpp:870:42: warning: format not a string literal and no format arguments
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp  -fPIC -DPIC -o DiffractionImagePythonInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImagePythonInterface.Tpo .deps/DiffractionImagePythonInterface.Plo
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib'  -o lib_DiffractionImage.la -rpath /usr/lib DiffractionImagePythonInterface.lo  -lm 
i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o  .libs/DiffractionImagePythonInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive  ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o  -Wl,-soname -Wl,lib_DiffractionImage.so.0 -o .libs/lib_DiffractionImage.so.0.0.0
(cd .libs && rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0)
(cd .libs && rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so)
rm -fr .libs/lib_DiffractionImage.lax
mkdir .libs/lib_DiffractionImage.lax
rm -fr .libs/lib_DiffractionImage.lax/libbruker.a
mkdir .libs/lib_DiffractionImage.lax/libbruker.a
(cd .libs/lib_DiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/lib_DiffractionImage.lax/libmar.a
mkdir .libs/lib_DiffractionImage.lax/libmar.a
(cd .libs/lib_DiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/lib_DiffractionImage.lax/librigaku.a
mkdir .libs/lib_DiffractionImage.lax/librigaku.a
(cd .libs/lib_DiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
ar cru .libs/lib_DiffractionImage.a  DiffractionImagePythonInterface.o  .libs/lib_DiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/lib_DiffractionImage.lax/libbruker.a/FRM_LIB.o  .libs/lib_DiffractionImage.lax/libmar.a/mar345_header.o .libs/lib_DiffractionImage.lax/libmar.a/marcif.o .libs/lib_DiffractionImage.lax/libmar.a/pck.o .libs/lib_DiffractionImage.lax/libmar.a/swap.o .libs/lib_DiffractionImage.lax/libmar.a/mar300_header.o .libs/lib_DiffractionImage.lax/libmar.a/nb_header.o .libs/lib_DiffractionImage.lax/libmar.a/utils.o  .libs/lib_DiffractionImage.lax/librigaku.a/ReadRAXISImages.o 
ranlib .libs/lib_DiffractionImage.a
rm -fr .libs/lib_DiffractionImage.lax
creating lib_DiffractionImage.la
(cd .libs && rm -f lib_DiffractionImage.la && ln -s ../lib_DiffractionImage.la lib_DiffractionImage.la)
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c -o DiffractionImageTclInterface.lo DiffractionImageTclInterface.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp  -fPIC -DPIC -o .libs/DiffractionImageTclInterface.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp  -fPIC -DPIC -o DiffractionImageTclInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImageTclInterface.Tpo .deps/DiffractionImageTclInterface.Plo
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib'  -o libDiffractionImage.la -rpath /usr/lib DiffractionImageTclInterface.lo  -lm 
i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o  .libs/DiffractionImageTclInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive  ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o  -Wl,-soname -Wl,libDiffractionImage.so.0 -o .libs/libDiffractionImage.so.0.0.0
(cd .libs && rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0)
(cd .libs && rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so)
rm -fr .libs/libDiffractionImage.lax
mkdir .libs/libDiffractionImage.lax
rm -fr .libs/libDiffractionImage.lax/libbruker.a
mkdir .libs/libDiffractionImage.lax/libbruker.a
(cd .libs/libDiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/libDiffractionImage.lax/libmar.a
mkdir .libs/libDiffractionImage.lax/libmar.a
(cd .libs/libDiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/libDiffractionImage.lax/librigaku.a
mkdir .libs/libDiffractionImage.lax/librigaku.a
(cd .libs/libDiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
ar cru .libs/libDiffractionImage.a  DiffractionImageTclInterface.o  .libs/libDiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImage.lax/libbruker.a/FRM_LIB.o  .libs/libDiffractionImage.lax/libmar.a/mar345_header.o .libs/libDiffractionImage.lax/libmar.a/marcif.o .libs/libDiffractionImage.lax/libmar.a/pck.o .libs/libDiffractionImage.lax/libmar.a/swap.o .libs/libDiffractionImage.lax/libmar.a/mar300_header.o .libs/libDiffractionImage.lax/libmar.a/nb_header.o .libs/libDiffractionImage.lax/libmar.a/utils.o  .libs/libDiffractionImage.lax/librigaku.a/ReadRAXISImages.o 
ranlib .libs/libDiffractionImage.a
rm -fr .libs/libDiffractionImage.lax
creating libDiffractionImage.la
(cd .libs && rm -f libDiffractionImage.la && ln -s ../libDiffractionImage.la libDiffractionImage.la)
/bin/sh ./libtool --tag=CXX   --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c -o DiffractionImageJavaInterface.lo DiffractionImageJavaInterface.cpp
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp  -fPIC -DPIC -o .libs/DiffractionImageJavaInterface.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp  -fPIC -DPIC -o DiffractionImageJavaInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImageJavaInterface.Tpo .deps/DiffractionImageJavaInterface.Plo
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib'  -o libDiffractionImaJ.la -rpath /usr/lib DiffractionImageJavaInterface.lo  -lm 
i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o  .libs/DiffractionImageJavaInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive  ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o  -Wl,-soname -Wl,libDiffractionImaJ.so.0 -o .libs/libDiffractionImaJ.so.0.0.0
(cd .libs && rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0)
(cd .libs && rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so)
rm -fr .libs/libDiffractionImaJ.lax
mkdir .libs/libDiffractionImaJ.lax
rm -fr .libs/libDiffractionImaJ.lax/libbruker.a
mkdir .libs/libDiffractionImaJ.lax/libbruker.a
(cd .libs/libDiffractionImaJ.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/libDiffractionImaJ.lax/libmar.a
mkdir .libs/libDiffractionImaJ.lax/libmar.a
(cd .libs/libDiffractionImaJ.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/libDiffractionImaJ.lax/librigaku.a
mkdir .libs/libDiffractionImaJ.lax/librigaku.a
(cd .libs/libDiffractionImaJ.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
ar cru .libs/libDiffractionImaJ.a  DiffractionImageJavaInterface.o  .libs/libDiffractionImaJ.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImaJ.lax/libbruker.a/FRM_LIB.o  .libs/libDiffractionImaJ.lax/libmar.a/mar345_header.o .libs/libDiffractionImaJ.lax/libmar.a/marcif.o .libs/libDiffractionImaJ.lax/libmar.a/pck.o .libs/libDiffractionImaJ.lax/libmar.a/swap.o .libs/libDiffractionImaJ.lax/libmar.a/mar300_header.o .libs/libDiffractionImaJ.lax/libmar.a/nb_header.o .libs/libDiffractionImaJ.lax/libmar.a/utils.o  .libs/libDiffractionImaJ.lax/librigaku.a/ReadRAXISImages.o 
ranlib .libs/libDiffractionImaJ.a
rm -fr .libs/libDiffractionImaJ.lax
creating libDiffractionImaJ.la
(cd .libs && rm -f libDiffractionImaJ.la && ln -s ../libDiffractionImaJ.la libDiffractionImaJ.la)
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT automask.o -MD -MP -MF .deps/automask.Tpo -c -o automask.o automask.cpp
mv -f .deps/automask.Tpo .deps/automask.Po
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0   -o automask automask.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm 
i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o automask automask.o  ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm  
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT diffdump.o -MD -MP -MF .deps/diffdump.Tpo -c -o diffdump.o diffdump.cpp
mv -f .deps/diffdump.Tpo .deps/diffdump.Po
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0   -o diffdump diffdump.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm 
i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diffdump diffdump.o  ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm  
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT printpeaks.o -MD -MP -MF .deps/printpeaks.Tpo -c -o printpeaks.o printpeaks.cpp
mv -f .deps/printpeaks.Tpo .deps/printpeaks.Po
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0   -o printpeaks printpeaks.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm 
i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o printpeaks printpeaks.o  ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm  
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I.  -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux  -O2 -pipe   -fPIC -g -O0 -MT diff2jpeg.o -MD -MP -MF .deps/diff2jpeg.Tpo -c -o diff2jpeg.o diff2jpeg.cpp
mv -f .deps/diff2jpeg.Tpo .deps/diff2jpeg.Po
/bin/sh ./libtool --tag=CXX   --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -g -O0   -o diff2jpeg diff2jpeg.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm 
i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diff2jpeg diff2jpeg.o  ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm  
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib"
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la'
/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la
/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la'
/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la
/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la'
/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la
/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la'
/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la
/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/"
  /bin/sh ./libtool   --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask'
cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask
  /bin/sh ./libtool   --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump'
cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump
  /bin/sh ./libtool   --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks'
cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks
  /bin/sh ./libtool   --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg'
cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg
cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc
cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html
cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
if test -f /librx.a; then \
  rm -rf rx.dir; mkdir rx.dir; \
  echo 'rxdispencer routines being added to library'; \
  cp /librx.a rx.dir; cd rx.dir; \
          ar -x librx.a; cd ..; \
  ar r libccif.a rx.dir/*.o; \
  ranlib libccif.a; rm -rf rx.dir; \
fi
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so  condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o  -o libccif.so -lm
ranlib libccif.a
cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a
cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib
if (test -f libccif.so); then \
  cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \
        fi
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o  library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o  -L../ccif/ -lccif  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && 		gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o  parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; fi
 cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_file_err.h
 cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_program.h
 cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_unitcell.h
 cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_errno.h
 cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_stats.h
 cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/csymlib.h
 cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_file.h
 cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/w32mvs.h
 cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_fortran.h
 cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_spg.h
 cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_utils.h
 cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_header.h
 cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib.h
 cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cvecmat.h
 cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/mtzdata.h
 cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_array.h
 cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_general.h
 cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_sysdep.h
 cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_vars.h
 cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_labels.h
 cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib_f.h
 cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/overview.h
 cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_errno.h
 cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_parser.h
 cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_types.h
 cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_data.h
 cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_skew.h
 cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmtzlib.h
 cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_f.h
ranlib ./libccp4c.a
ranlib ./libccp4f.a
cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a
cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a
cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; 
cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT ssm_superpose.lo -MD -MP -MF ".deps/ssm_superpose.Tpo" -c -o ssm_superpose.lo ssm_superpose.cpp; \
then mv -f ".deps/ssm_superpose.Tpo" ".deps/ssm_superpose.Plo"; else rm -f ".deps/ssm_superpose.Tpo"; exit 1; fi
mkdir .libs
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp  -fPIC -DPIC -o .libs/ssm_superpose.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -o ssm_superpose.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT ss_csia.lo -MD -MP -MF ".deps/ss_csia.Tpo" -c -o ss_csia.lo ss_csia.cpp; \
then mv -f ".deps/ss_csia.Tpo" ".deps/ss_csia.Plo"; else rm -f ".deps/ss_csia.Tpo"; exit 1; fi
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp  -fPIC -DPIC -o .libs/ss_csia.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -o ss_csia.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT ss_vxedge.lo -MD -MP -MF ".deps/ss_vxedge.Tpo" -c -o ss_vxedge.lo ss_vxedge.cpp; \
then mv -f ".deps/ss_vxedge.Tpo" ".deps/ss_vxedge.Plo"; else rm -f ".deps/ss_vxedge.Tpo"; exit 1; fi
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp  -fPIC -DPIC -o .libs/ss_vxedge.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -o ss_vxedge.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT ssm_align.lo -MD -MP -MF ".deps/ssm_align.Tpo" -c -o ssm_align.lo ssm_align.cpp; \
then mv -f ".deps/ssm_align.Tpo" ".deps/ssm_align.Plo"; else rm -f ".deps/ssm_align.Tpo"; exit 1; fi
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp  -fPIC -DPIC -o .libs/ssm_align.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -o ssm_align.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT ss_graph.lo -MD -MP -MF ".deps/ss_graph.Tpo" -c -o ss_graph.lo ss_graph.cpp; \
then mv -f ".deps/ss_graph.Tpo" ".deps/ss_graph.Plo"; else rm -f ".deps/ss_graph.Tpo"; exit 1; fi
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp  -fPIC -DPIC -o .libs/ss_graph.o
 i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -o ss_graph.o >/dev/null 2>&1
/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb  -o libssm.la -rpath /usr/lib  ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo  -lm 
i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o  .libs/ssm_superpose.o .libs/ss_csia.o .libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o  -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src /usr/lib/libmmdb.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o  -Wl,-soname -Wl,libssm.so.0 -o .libs/libssm.so.0.0.0
(cd .libs && rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0)
(cd .libs && rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so)
ar cru .libs/libssm.a  ssm_superpose.o ss_csia.o ss_vxedge.o ssm_align.o ss_graph.o
ranlib .libs/libssm.a
creating libssm.la
(cd .libs && rm -f libssm.la && ln -s ../libssm.la libssm.la)
if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb    -O2 -pipe   -fPIC -MT superpose.o -MD -MP -MF ".deps/superpose.Tpo" -c -o superpose.o superpose.cpp; \
then mv -f ".deps/superpose.Tpo" ".deps/superpose.Po"; else rm -f ".deps/superpose.Tpo"; exit 1; fi
/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++  -O2 -pipe   -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb  -o superpose  superpose.o libssm.la -lm 
i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -o .libs/superpose superpose.o  -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src ./.libs/libssm.so /usr/lib/libmmdb.so -lm 
creating superpose
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib"
 /bin/sh ./libtool --mode=install /usr/bin/install -c  'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la'
/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la
/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/"
  /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose'
cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm"
 cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_graph.h'
 cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_superpose.h'
 cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_csia.h'
 cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_vxedge.h'
 cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_align.h'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o fontpack /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/fontpack.f -L../src -L/usr/lib -lccp4f -lccp4c -lmmdb -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif -lccif -L/usr/lib -llapack -lstdc++ -lm
rm -f font84.dat
test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii .
LD_LIBRARY_PATH="../src:../ccif" ./fontpack
cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat 
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3'
if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/clipper/clipper; \
make -i  ; else true; fi
if test -n "lib/ssm"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm; \
make -i  ; else true; fi
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
if test -n "lib/DiffractionImage"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage; \
make -i  ; else true; fi
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
Making all in Bruker
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
Making all in MAR
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
Making all in Rigaku
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
cd lib/data; make   font84.dat
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
make[1]: Nothing to be done for `font84.dat'.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
>>> Source compiled.
>>> Test phase [none]: sci-libs/ccp4-libs-6.1.3-r3

>>> Install ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ category sci-libs
make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ includedir=/usr/include library_includedir=/usr/include install 
for i in   lib/DiffractionImage  lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i  ; do (if test -f $i/Makefile; then \
  if test $i = x-windows; then \
    cd $i; make -i  install; \
  else cd $i; make   install; fi; \
else true; fi) ; done
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
Making install in Bruker
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker'
Making install in MAR
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR'
Making install in Rigaku
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib"
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la'
/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la
/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la'
/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la
/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la'
/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la
/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c  'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la'
/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la
/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/"
  /bin/sh ./libtool   --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask'
cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask
  /bin/sh ./libtool   --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump'
cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump
  /bin/sh ./libtool   --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks'
cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks
  /bin/sh ./libtool   --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg'
cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg
cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc
cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html
cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
if test -f /librx.a; then \
  rm -rf rx.dir; mkdir rx.dir; \
  echo 'rxdispencer routines being added to library'; \
  cp /librx.a rx.dir; cd rx.dir; \
          ar -x librx.a; cd ..; \
  ar r libccif.a rx.dir/*.o; \
  ranlib libccif.a; rm -rf rx.dir; \
fi
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so  condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o  -o libccif.so -lm
i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1  -I.  -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm  
 
Building symbol table:
LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out
Loading dictionary....dictionary loaded.
Starting first tree walk....tree walk completed.
Starting second tree walk....tree walk completed.
Grouping items in their categories....done
Dumping symbol table....symbol table dumped.
ranlib libccif.a
cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a
cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib
if (test -f libccif.so); then \
  cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \
        fi
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o  library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o  -L../ccif/ -lccif  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && 		gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o  parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb  -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; fi
 cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_file_err.h
 cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_program.h
 cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_unitcell.h
 cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_errno.h
 cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_stats.h
 cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/csymlib.h
 cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_file.h
 cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/w32mvs.h
 cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_fortran.h
 cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_spg.h
 cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_utils.h
 cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_header.h
 cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib.h
 cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cvecmat.h
 cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/mtzdata.h
 cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_array.h
 cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_general.h
 cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_sysdep.h
 cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_vars.h
 cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_labels.h
 cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib_f.h
 cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/overview.h
 cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_errno.h
 cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_parser.h
 cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_types.h
 cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_data.h
 cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_skew.h
 cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmtzlib.h
 cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_f.h
ranlib ./libccp4c.a
ranlib ./libccp4f.a
cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a
cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a
cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; 
cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib"
 /bin/sh ./libtool --mode=install /usr/bin/install -c  'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la'
/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la
/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/"
  /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose'
cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose
test -z "/usr/include" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm"
 cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_graph.h'
 cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_superpose.h'
 cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_csia.h'
 cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_vxedge.h'
 cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_align.h'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
rm -f font84.dat
test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii .
LD_LIBRARY_PATH="../src:../ccif" ./fontpack
cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat 
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data'
>>> Completed installing ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/

Fixing .la files
   usr/lib/libDiffractionImage.la
   usr/lib/libssm.la
   usr/lib/libDiffractionImaJ.la
   usr/lib/lib_DiffractionImage.la
strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/libexec/ccp4/bin/diff2jpeg
   usr/libexec/ccp4/bin/printpeaks
   usr/libexec/ccp4/bin/diffdump
   usr/libexec/ccp4/bin/superpose
   usr/libexec/ccp4/bin/automask
   usr/lib/lib_DiffractionImage.so.0.0.0
   usr/lib/libDiffractionImaJ.so.0.0.0
   usr/lib/libDiffractionImage.so.0.0.0
   usr/lib/libssm.so.0.0.0
   usr/lib/libccp4f.so
   usr/lib/libccp4c.so
   usr/lib/libccif.so
   usr/lib/lib_DiffractionImage.a
   usr/lib/libccif.a
   usr/lib/libccp4c.a
   usr/lib/libDiffImage.a
   usr/lib/libDiffractionImage.a
   usr/lib/libccp4f.a
   usr/lib/libDiffractionImaJ.a
   usr/lib/libssm.a
removing executable bit: usr/lib/libDiffImage.la
removing executable bit: usr/lib/lib_DiffractionImage.la
removing executable bit: usr/lib/libDiffractionImage.la
removing executable bit: usr/lib/libDiffractionImaJ.la
removing executable bit: usr/lib/libssm.la

 * QA Notice: Package has poor programming practices which may compile
 *            fine but exhibit random runtime failures.
 * /usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer

 * Please do not file a Gentoo bug and instead report the above QA
 * issues directly to the upstream developers of this software.
 * Homepage: http://www.ccp4.ac.uk/