* Package: sci-libs/ccp4-libs-6.1.3-r3 * Repository: gentoo * Maintainer: jlec@gentoo.org sci-chemistry@gentoo.org * USE: elibc_glibc kernel_linux test userland_GNU x86 * You need one of these Fortran Compilers: g77 gfortran ifc * Installed are: gfortran ifort >>> Unpacking source... >>> Unpacking ccp4-6.1.3-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work * Applying patches for selected FORTRAN compiler: gfortran >>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work >>> Preparing source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... * Applying upstream patches ... * Done. * Applying Gentoo patches ... * 6.1.3-dont-make-dirs-in-configure.patch ... [ ok ] * 6.0.2-ppc-double-define-gerror.patch ... [ ok ] * 6.1.3-ccif-shared.patch ... [ ok ] * 6.1.3-dont-build-mmdb.patch ... [ ok ] * 6.1.3-unbundle-libs.patch ... [ ok ] * 6.1.3-noinstall.patch ... [ ok ] * Done. * Using GNU config files from /usr/share/gnuconfig * Updating x-windows/xdl_view/src/config.sub [ ok ] * Updating x-windows/Mosflm/config.sub [ ok ] * Updating x-windows/Mosflm/jpg/config.sub [ ok ] * Updating x-windows/Mosflm/cbf/config.sub [ ok ] * Updating x-windows/Rotgen/config.sub [ ok ] * Updating x-windows/libjwc/libjwc_f/config.sub [ ok ] * Updating x-windows/libjwc/libjwc_c/config.sub [ ok ] * Updating lib/fftw/config.sub [ ok ] * Updating lib/DiffractionImage/config.sub [ ok ] * Updating lib/rxdispencer/config.sub [ ok ] * Updating lib/ccif/config.sub [ ok ] * Updating lib/clipper/config.sub [ ok ] * Updating lib/ssm/config.sub [ ok ] * Updating src/rapper/gc7.0/config.sub [ ok ] * Updating src/rapper/gc7.0/libatomic_ops-1.2/config.sub [ ok ] * Updating src/rapper/config.sub [ ok ] * Updating src/rapper/libxml2/config.sub [ ok ] * Updating src/clipper_progs/config.sub [ ok ] * Updating src/pointless/config.sub [ ok ] * Updating src/pisa/config.sub [ ok ] * Updating x-windows/xdl_view/src/config.guess [ ok ] * Updating x-windows/Mosflm/jpg/config.guess [ ok ] * Updating x-windows/Mosflm/config.guess [ ok ] * Updating x-windows/Mosflm/cbf/config.guess [ ok ] * Updating x-windows/Rotgen/config.guess [ ok ] * Updating x-windows/libjwc/libjwc_f/config.guess [ ok ] * Updating x-windows/libjwc/libjwc_c/config.guess [ ok ] * Updating lib/fftw/config.guess [ ok ] * Updating lib/DiffractionImage/config.guess [ ok ] * Updating lib/rxdispencer/config.guess [ ok ] * Updating lib/ccif/config.guess [ ok ] * Updating lib/clipper/config.guess [ ok ] * Updating lib/ssm/config.guess [ ok ] * Updating src/rapper/gc7.0/libatomic_ops-1.2/config.guess [ ok ] * Updating src/rapper/gc7.0/config.guess [ ok ] * Updating src/rapper/config.guess [ ok ] * Updating src/rapper/libxml2/config.guess [ ok ] * Updating src/clipper_progs/config.guess [ ok ] * Updating src/pointless/config.guess [ ok ] * Updating src/pisa/config.guess [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... with_fftw='/usr' srcdir bindir libdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 /usr/libexec/ccp4/bin/ /usr/lib OK, setting up for a system type of `linux'... ! onlylibs build requested ! ! Only the libraries will be configured and built. ! Configuration of x-windows programs, phaser and mapslicer ! command library have been implicitly disabled. ! (Some messages below regarding re-enabling these options ! are likely to be misleading.) ! Using gnu fortran compiler. If you have an old fortran compiler, you may be better ! off using f2c, see --with-f2c option. ! The x-windows programs will not be installed. ! If you want the x-windows programs to be installed re-run ! configure with the --enable-x flag. The CCIF library will be built and installed. This has been tested on the most common systems, but if you have problems, use the --disable-ccif flag. Installation of the CCTBX library has been suppressed. Some functionality will be lost. Installation of Phaser has been suppressed. The LAPACK linear algebra package will be included in the installation. Configure will search for existing LAPACK and BLAS libraries on on your system - if a version of LAPACK is not found then the NetLib version will be built for you automatically. If you want NetLib LAPACK and BLAS to be used regardless of system libraries then rerun configure using --with-netlib-lapack To disable inclusion of LAPACK, use the --disable-lapack flag (This is not recommended as some programs will fail to build) Building of the CCP4i MapSlicer command library has been suppressed. As a result you will not be able to use the MapSlicer viewer. ! You have specified a non-default Fortran compiler (gfortran). This probably only makes sense if you have made the appropriate changes to the Fortran-C interface routines. testing linux ABI using: i686-pc-linux-gnu-gcc $ 32-bit Testing Fortran90 support. Fortran90 support confirmed (needed for latest Refmac and Molrep) checking for ctime... yes Testing command for running m4 (m4 -D_gfort=1) ... ok Running separate configure for CCIF library. Updating modification times for configuration files Please wait... ...done. configure: loading cache /tmp/22437.cache_file CCCCCC CCCCCC IIII FFFFFFFFFF CCCCCCCCCC CCCCCCCCCC IIII FFFFFFFFFF CC C CC C II FF CC CC II FF CC CC II FFFFF CC CC II FFFFF CC CC II FF CC C CC C II FF CCCCCCCCCC CCCCCCCCC IIII FF CCCCCC CCCCC IIII FF ======================================================= Fortran programmers' tools for mmCIF checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... i686-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for function prototypes... yes checking for ranlib... ranlib checking for gawk... gawk checking for nm... /usr/bin/nm checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking standards.h usability... no checking standards.h presence... no checking for standards.h... no checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking for unistd.h... checking for unistd.h... (cached) yes yes checking for an ANSI C-conforming const... yes ------------------------------------------------- Setting up system-dependent stuff ------------------------------------------------- checking for standards.h... (cached) no checking for working non-fixed mmap... yes checking whether strdup declared in string.h... yes ------------------------------------------------- Regular expression package stuff ------------------------------------------------- checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking out regular expression package... ok ------------------------------------------------- *** Configuring CCIF build for shared library *** ------------------------------------------------- ------------------------------------------------- Checking for certain archaic features ------------------------------------------------- checking whether we need to define strerror... no checking for old-style realloc... no checking for old BSD sprintf... no configure: updating cache /tmp/22437.cache_file configure: creating ./config.status config.status: creating shlib.csh config.status: creating shlib.sh config.status: creating Makefile Returning to main configure. ********* BLAS AND LAPACK CONFIGURATION *********** Warning: this option has not been extensively tested! Please report problems to ccp4@ccp4.ac.uk Guessing names for native/vendor LAPACK and/or BLAS libraries on this system Possible LAPACK library names for this system: liblapack Searching for libraries with LAPACK and BLAS: ...nothing in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ...nothing in /lib ...found LAPACK library: /usr/lib/liblapack.a Testing: try to link library against test program gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlink testlink.f -L/usr/lib -llapack Link ok - using liblapack from /usr/lib * Checking whether we need a separate BLAS library * Testing: try linking library against test program gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlsame lsametst.f -L/usr/lib -llapack Test program okay - additional separate BLAS not required Test C linking for lapack library i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -o testlink testlink.c -L/usr/lib -llapack /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp/ccEaRP8A.o: In function `main': testlink.c:(.text+0x9c): undefined reference to `dsyev' collect2: ld returned 1 exit status Linking in LAPACK/BLAS using XLAPACK_LIB="-L/usr/lib -llapack" ***** BLAS AND LAPACK CONFIGURATION FINISHED ******* ********* DIFFRACTION IMAGE LIBRARY CONFIGURATION *********** Updating modification times for configuration files Please wait... ...done. configure --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-tcl-module --with-pic checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for style of include used by make... 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(cached) yes checking for python... python checking /usr/include/python2.7/Python.h usability... yes checking /usr/include/python2.7/Python.h presence... yes checking for /usr/include/python2.7/Python.h... yes checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking /etc/java-config-2/current-system-vm/include/jni.h usability... yes checking /etc/java-config-2/current-system-vm/include/jni.h presence... yes checking for /etc/java-config-2/current-system-vm/include/jni.h... yes checking for sqrt in -lm... yes configure: creating ./config.status config.status: creating Makefile config.status: creating MAR/Makefile config.status: creating Rigaku/Makefile config.status: creating Bruker/Makefile config.status: executing depfiles commands ***** DIFFRACTION IMAGE LIBRARY CONFIGURATION FINISHED ******* ********* SSM CONFIGURATION *********** Updating modification times for configuration files Please wait... ...done. configure --enable-shared=yes --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ccp4=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for style of include used by make... 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(cached) yes checking for a BSD-compatible install... /usr/bin/install -c checking for CMMDBManager in MMDB... no configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for sqrt in -lm... yes configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands ***** SSM CONFIGURATION FINISHED ******* ********* RAPPER CONFIGURATION *********** Updating modification times for configuration files Please wait... ...done. configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --disable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... 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GNU/Linux ld.so checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking dynamic linker characteristics... GNU/Linux ld.so appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking dynamic linker characteristics... GNU/Linux ld.so configure: creating ./config.status config.status: creating Makefile config.status: WARNING: Makefile.in seems to ignore the --datarootdir setting config.status: creating LOOP/Makefile config.status: WARNING: LOOP/Makefile.in seems to ignore the --datarootdir setting config.status: creating data/Makefile config.status: WARNING: data/Makefile.in seems to ignore the --datarootdir setting config.status: executing depfiles commands === configuring in gc7.0 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/gc7.0) configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking GC version numbers... major=7 minor=0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for style of include used by make... GNU checking for gcc... i686-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking for ar... ar checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking for thread model used by GCC... posix configure: WARNING: "Explict GC_INIT() calls may be required." checking for xlc... no checking for dlopen in -ldl... yes checking whether to build shared libraries... yes checking which machine-dependent code should be used... checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok checking for objdir... .libs checking for ar... (cached) ar checking for ranlib... (cached) ranlib checking for strip... strip checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-gcc static flag -static works... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-g++ static flag -static works... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/dg_sys_info.h usability... no checking sys/dg_sys_info.h presence... no checking for sys/dg_sys_info.h... no checking whether Solaris gcc optimization fix is necessary... no checking atomic_ops.h usability... yes checking atomic_ops.h presence... yes checking for atomic_ops.h... yes configure: Using pre-installed libatomic_ops configure: creating ./config.status config.status: creating Makefile config.status: creating bdw-gc.pc config.status: executing depfiles commands config.status: executing default commands === configuring in libxml2 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/libxml2) configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... i686-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-gcc... gcc3 checking for a BSD-compatible install... /usr/bin/install -c checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for rm... /bin/rm checking for mv... /bin/mv checking for tar... /bin/tar checking for perl... /usr/bin/perl checking for xmllint... /usr/bin/xmllint checking for xsltproc... /usr/bin/xsltproc checking for function prototypes... yes checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-gcc static flag -static works... yes checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if i686-pc-linux-gnu-g++ static flag -static works... yes checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Checking zlib checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzread in -lz... yes Checking headers checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for unistd.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ansidecl.h usability... yes checking ansidecl.h presence... yes checking for ansidecl.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking nan.h usability... no checking nan.h presence... no checking for nan.h... no checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking fp_class.h usability... no checking fp_class.h presence... no checking for fp_class.h... no checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for sys/socket.h... yes checking for netinet/in.h... yes checking for arpa/inet.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for arpa/nameser.h... yes checking for resolv.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking for dlfcn.h... (cached) yes Checking libraries checking for strftime... yes checking for strdup... yes checking for strndup... yes checking for strerror... yes checking for finite... yes checking for isnand... no checking for fp_class... no checking for class... no checking for fpclass... no checking for strftime... (cached) yes checking for localtime... yes checking for gettimeofday... yes checking for ftime... yes checking for stat... yes checking for _stat... no checking for signal... yes checking for printf... yes checking for sprintf... yes checking for fprintf... yes checking for snprintf... yes checking for vfprintf... yes checking for vsprintf... yes checking for vsnprintf... yes checking for sscanf... yes checking for va_copy... yes checking for library containing gethostent... none required checking for library containing setsockopt... none required checking for library containing connect... none required checking for type of socket length (socklen_t)... socklen_t * checking whether to enable IPv6... yes checking struct sockaddr::ss_family... yes checking for getaddrinfo... yes checking for isnan... yes checking for isinf... yes checking for python... /usr/bin/python Found Python version 2.7 checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes Checking configuration requirements Enabling multithreaded support checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_join in -lpthread... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes Enabled Schematron support Enabled Schemas/Relax-NG support configure: creating ./config.status config.status: creating libxml2.spec config.status: creating Makefile config.status: creating include/Makefile config.status: creating include/libxml/Makefile config.status: creating doc/Makefile config.status: creating doc/examples/Makefile config.status: creating doc/devhelp/Makefile config.status: creating example/Makefile config.status: creating python/Makefile config.status: creating python/tests/Makefile config.status: creating xstc/Makefile config.status: creating include/libxml/xmlversion.h config.status: creating xml2-config config.status: creating libxml-2.0.pc config.status: creating libxml-2.0-uninstalled.pc config.status: creating python/setup.py config.status: creating config.h config.status: executing depfiles commands Done configuring ***** RAPPER CONFIGURATION FINISHED ******* ********* PISA CONFIGURATION *********** Updating modification times for configuration files Please wait... ...done. configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ssm=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of i686-pc-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E checking for egrep... grep -E checking for ANSI C header files... yes checking for a BSD-compatible install... /usr/bin/install -c checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for sqrt in -lm... yes checking for CMMDBManager in MMDB... no configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb checking for CSSMAlign in SSM... no configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib -lssm headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm configure: creating ./config.status config.status: creating Makefile config.status: creating pisastore/Makefile config.status: creating molref/Makefile config.status: creating sbase/Makefile config.status: creating doc/Makefile config.status: creating pisa.cfg config.status: executing depfiles commands ***** PISA CONFIGURATION FINISHED ******* Building of the RCSB PDB_EXTRACT suite has been suppressed. As a result you will not be able to use the PDB_EXTRACT programs. The configuration can be re-built by executing config.status : #!/bin/sh # (Generated automatically by configure) # CCP4 was configured as follows: libdir="/usr/lib" RANLIB="ranlib" \ FC="gfortran" FOPTIM="-O2 -pipe" \ COPTIM="-O2 -pipe" XFFLAGS="-fno-second-underscore -fno-stack-protector -fPIC" \ XCFLAGS="-DGFORTRAN -DPROTOTYPE -fPIC" CC="i686-pc-linux-gnu-gcc" \ LNS="ln -s" M4="m4 -D_gfort=1" \ XCXXFLAGS=" -fPIC" CXX="i686-pc-linux-gnu-g++" \ CXXOPTIM="-O2 -pipe" \ M4FLAGS="" SETFLAGS="lgglib_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' arp_waters_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O2 -pipe -fforce-mem' " \ MAKE="make" F="f" \ INSTALL_PROGRAM="cp -p" INSTALL_DATA="cp -p" \ XLDFLAGS=" -lm" \ SHARE_LIB=" i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so ${CORELIBOBJS} ${CGENERALOBJS} ${CUCOBJS} ${CMTZOBJS} ${CMAPOBJS} ${CSYMOBJS} -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so ${FORTRANLOBJS} ${FINTERFACEOBJS} -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm" \ SHARED_LIB_CFLAGS='' \ SHARED_LIB_FFLAGS="" \ SHARE_INST="$(INSTALL_DATA) `pwd`/libmmdb.so $(DESTDIR)/$(libdir)/libmmdb.so; $(INSTALL_DATA) `pwd`/libccp4c.so $(DESTDIR)/$(libdir)/libccp4c.so; $(INSTALL_DATA) `pwd`/libccp4f.so $(DESTDIR)/$(libdir)/libccp4f.so; " \ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/configure --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --onlylibs --with-shared-libs --tmpdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp --disable-x --disable-cctbx --disable-phaser --disable-mapslicer --enable-ssm --disable-clipper --disable-fftw --with-fftw=/usr --with-warnings --disable-pdb_extract linux -hush >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ onlylib if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/lapack; \ make ; else true; fi if test -n "lib/ccif"; then cd lib/ccif; \ make ; else true; fi make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' gawk -f ./condition.awk ./condition.list i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o condition.o ./condition.c && \ ar r libccif.a condition.o && true ar: creating libccif.a ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_map.o ./star_map.c &&\ ar r libccif.a star_map.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o ccif_unix.o ./ccif_unix.c && \ ar r libccif.a ccif_unix.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sym.o ./sym.c && \ ar r libccif.a sym.o && true ./sym.c: In function ‘zzs_undump’: ./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:860:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:861:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:862:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:863:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:864:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:894:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c:901:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result ./sym.c: In function ‘zzs_dump’: ./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:730:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:731:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:732:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:733:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:734:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:735:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ./sym.c:762:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sorlist.o ./sorlist.c && \ ar r libccif.a sorlist.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. ./scanf_ansi.c -o scanf_ansi i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_scan.o ./star_scan.c -DPTR_FROM_TEXT=`./scanf_test` && \ ar r libccif.a star_scan.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_err.o ./star_err.c && \ ar r libccif.a star_err.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o value_manip.o ./value_manip.c && \ ar r libccif.a value_manip.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o context.o ./context.c && \ ar r libccif.a context.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o struct_manip.o ./struct_manip.c && \ ar r libccif.a struct_manip.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o f_interface.o ./f_interface.c && \ ar r libccif.a f_interface.o && true In file included from /usr/include/string.h:642:0, from ./library.h:166, from ./stdpccts.h:42, from ./f_interface.c:27: In function ‘strncpy’, inlined from ‘ccif_block_by_index_’ at ./f_interface.c:4072:11: /usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_walk.o ./star_walk.c && \ ar r libccif.a star_walk.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_print.o -D_refvar_inits=star_print_refvar_inits ./star_print.c && \ ar r libccif.a star_print.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_graph.o -D_refvar_inits=star_dot_refvar_inits ./star_graph.c && \ ar r libccif.a star_graph.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o lib_dict2tab.o -D_refvar_inits=_dict_refvar_inits \ ./lib_dict2tab.c && \ ar r libccif.a lib_dict2tab.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sort.o ./sort.c && \ ar r libccif.a sort.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o list.o ./list.c && \ ar r libccif.a list.o && true ranlib libccif.a i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o rb.o ./rb.c && \ ar r libccif.a rb.o && true ./rb.c: In function ‘rb_print_tree’: ./rb.c:446:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’ ./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ ./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ ./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ ./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ ./rb.c: In function ‘rb_iprint_tree’: ./rb.c:471:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’ ./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 4 has type ‘struct rb_node *’ ./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ ./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ ./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ ./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ ./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ ./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ ./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ ./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ ranlib libccif.a if ( test ! -f ./strtod.c ); then touch ./strtod.c; fi if (test -s ./strtod.c -a -r ./strtod.c) ; \ then \ i686-pc-linux-gnu-gcc -c ./strtod.c && ar r libccif.a strtod.o; \ ranlib libccif.a ; rm -f strtod.o; \ else \ touch libccif.a ; \ fi if test -f /librx.a; then \ rm -rf rx.dir; mkdir rx.dir; \ echo 'rxdispencer routines being added to library'; \ cp /librx.a rx.dir; cd rx.dir; \ ar -x librx.a; cd ..; \ ar r libccif.a rx.dir/*.o; \ ranlib libccif.a; rm -rf rx.dir; \ fi i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. ./cifdic_to_symtab.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm Building symbol table: LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out Loading dictionary....dictionary loaded. Starting first tree walk....tree walk completed. Starting second tree walk....tree walk completed. Grouping items in their categories....done Dumping symbol table....symbol table dumped. make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' cd lib/src; make make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' test ! -x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit && i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -o /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit fsplit.c || true i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_err.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_file.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_utils.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_array.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cvecmat.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_program.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c: In function ‘ccperror’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c:98:3: warning: passing argument 2 of ‘ccp4InvokeCallback’ discards qualifiers from pointer target type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_program.h:128:5: note: expected ‘char *’ but argument is of type ‘const char *’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_accessor.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_close.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_data.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_header.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_labels.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_open.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_skew.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_stats.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_symop.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib.o .o`.c ar r ./libccp4c.a library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o ar: creating ./libccp4c.a ranlib libccp4c.a rm -rf parser.dir; mkdir parser.dir cd parser.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/parser.f && rm -f ZZZ*.f zzz*.f; keynum.f keyerr.f gtnrea.f gtnint.f gtprea.f gtpint.f sblank.f cmatch.f chkkey.f putlin.f blank.f lerror.f rdsymm.f rdhead.f rdcell.f rdreso.f rdscal.f rdresl.f gttrea.f gttint.f rdatomselect.f if test ! -f parser.dir/parser.f; then \ echo ' SUBROUTINE PRSER' > parser.dir/parser.f; \ echo ' END' >> parser.dir/parser.f; \ fi cd parser.dir && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o ar: creating .././libccp4f.a rm -rf fftlib.dir; mkdir fftlib.dir echo ' SUBROUTINE FFTLIB' > fftlib.dir/fftlib.f echo ' END' >> fftlib.dir/fftlib.f cd fftlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fftlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done \ && ar r .././libccp4f.a *.o rm -rf lgglib.dir; mkdir lgglib.dir echo ' SUBROUTINE LGGLIB' > lgglib.dir/lgglib.f echo ' END' >> lgglib.dir/lgglib.f /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb1.f:29.72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb2.f:31.72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb3.f:31.72: 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdbca.f:24.72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb.f:23.72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getrdi.f:25.72: 1 SEQ(NATM), RES(NATM), ATOM(NATM) 1 Warning: Branch at (1) may result in an infinite loop rm -rf libhtml.dir; mkdir libhtml.dir echo ' SUBROUTINE LIBHTML' > libhtml.dir/libhtml.f echo ' END' >> libhtml.dir/libhtml.f cd libhtml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libhtml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf modlib.dir; mkdir modlib.dir echo ' SUBROUTINE MODLIB' > modlib.dir/modlib.f echo ' END' >> modlib.dir/modlib.f cd modlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/modlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf plotsubs.dir; mkdir plotsubs.dir echo ' SUBROUTINE PLOTSUBS' > plotsubs.dir/plotsubs.f echo ' END' >> plotsubs.dir/plotsubs.f cd plotsubs.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plotsubs.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf plot84lib.dir; mkdir plot84lib.dir echo ' SUBROUTINE PLOT84LIB' > plot84lib.dir/plot84lib.f echo ' END' >> plot84lib.dir/plot84lib.f cd plot84lib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plot84lib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf pxxml.dir; mkdir pxxml.dir echo ' SUBROUTINE PXXML' > pxxml.dir/pxxml.f echo ' END' >> pxxml.dir/pxxml.f cd pxxml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pxxml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf ccplib.dir; mkdir ccplib.dir echo ' SUBROUTINE CCPLIB' > ccplib.dir/ccplib.f echo ' END' >> ccplib.dir/ccplib.f cd ccplib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccplib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o m4 -D_gfort=1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/unix.m4 >unix.f rm -rf unix.dir; mkdir unix.dir echo ' SUBROUTINE UNIX' > unix.dir/unix.f echo ' END' >> unix.dir/unix.f cd unix.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit ../unix.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf rwbrook.dir; mkdir rwbrook.dir echo ' SUBROUTINE RWBROOK' > rwbrook.dir/rwbrook.f echo ' END' >> rwbrook.dir/rwbrook.f cd rwbrook.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/rwbrook.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o rm -rf cciflib.dir; mkdir cciflib.dir echo ' SUBROUTINE CCIFLIB' > cciflib.dir/cciflib.f echo ' END' >> cciflib.dir/cciflib.f cd cciflib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cciflib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ && ar r .././libccp4f.a *.o rm -rf harvlib.dir; mkdir harvlib.dir echo ' SUBROUTINE HARVLIB' > harvlib.dir/harvlib.f echo ' END' >> harvlib.dir/harvlib.f if test -n "lib/ccif" ; then cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harvlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ && ar r .././libccp4f.a *.o ; else \ cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harv_dummy.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ && ar r .././libccp4f.a *.o ; fi rm -rf keyparse.dir; mkdir keyparse.dir echo ' SUBROUTINE KEYPARSE' > keyparse.dir/keyparse.f echo ' END' >> keyparse.dir/keyparse.f cd keyparse.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/keyparse.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_f.f && ar r ./libccp4f.a pack_f.o i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘v2pack_chunk’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:901:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:910:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘pack_chunk’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:852:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:860:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result ar r ./libccp4f.a pack_c.o rm -rf dna_output.dir; mkdir dna_output.dir echo ' SUBROUTINE DNA_OUTPUT' > dna_output.dir/dna_output.f echo ' END' >> dna_output.dir/dna_output.f cd dna_output.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/dna_output.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ for i in `pwd`/*.f; do \ gfortran -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ && ar r .././libccp4f.a *.o i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib_f.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrhist_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:275:2: warning: passing argument 2 of ‘ccp4_lrhist’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:662:5: note: expected ‘char (*)[80]’ but argument is of type ‘fpstr’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyin_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:602:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyout_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:656:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyset_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 4 of ‘MtzParseLabin’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘char (*)[2][31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrassn_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 2 of ‘ccp4_lrassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 4 of ‘ccp4_lrassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘char (*)[3]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrreff_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1180:14: warning: passing argument 5 of ‘ccp4_lrreff’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:787:5: note: expected ‘const struct MTZCOL **’ but argument is of type ‘struct MTZCOL **’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhist_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1777:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘fpstr’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhstl_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1829:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwassn_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwclab_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib_f.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr3_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:341:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr4_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:377:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘calc_orig_ps_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:1684:3: warning: passing argument 3 of ‘ccp4spg_generate_origins’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib.h:579:5: note: expected ‘const float (*)[4][4]’ but argument is of type ‘float (*)[4][4]’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser_f.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_f.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘ltime_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:799:3: warning: passing argument 1 of ‘localtime_r’ makes pointer from integer without a cast /usr/include/time.h:248:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘gmtime_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:832:3: warning: passing argument 1 of ‘gmtime_r’ makes pointer from integer without a cast /usr/include/time.h:243:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_diskio_f.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general_f.o .o`.c i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell_f.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orth_to_frac_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:86:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_frac_to_orth_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:105:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orthu_to_fracu_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:124:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_fracu_to_orthu_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:143:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmaplib_f.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ioArrayPrint’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:91:5: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:97:3: warning: passing argument 1 of ‘free’ discards qualifiers from pointer target type /usr/include/stdlib.h:488:13: note: expected ‘void *’ but argument is of type ‘const char *’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘msywrt_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1154:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ccp4_map_write_symm_matrix_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1181:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename binsortint.o .o`.c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c: In function ‘srtbeg_’: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:160:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:161:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename hybrid_36_f.o .o`.c ar r ./libccp4f.a cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o ranlib libccp4f.a i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/fftw; \ make -i install; else true; fi ; \ make install make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' for i in lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i ; do (if test -f $i/Makefile; then \ if test $i = x-windows; then \ cd $i; make -i -w install; \ else cd $i; make -w install; fi; \ else true; fi) ; done make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' Making install in Bruker make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' /bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c -o FrmRoutines.lo FrmRoutines.cpp mkdir .libs i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o .libs/FrmRoutines.o FrmRoutines.cpp: In function 'long int* ReadFrameFile(char*, FRM_HEADER*)': FrmRoutines.cpp:91:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:97:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:114:60: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:116:85: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:132:88: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' FrmRoutines.cpp:149:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:161:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:173:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:197:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int' FrmRoutines.cpp:199:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:215:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int' FrmRoutines.cpp:217:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:244:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' FrmRoutines.cpp: In function 'long int SaveFrameFile(char*, FRM_HEADER*, long int*)': FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 3 has type 'INT64*' FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 4 has type 'INT64*' FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 5 has type 'INT64*' FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 6 has type 'INT64*' FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 7 has type 'INT64*' FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 3 has type 'INT64' FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 4 has type 'INT64' FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 5 has type 'INT64' FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 6 has type 'INT64' FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 7 has type 'INT64' FrmRoutines.cpp: In function 'long int SaveFrameFile_Old(char*, FRM_HEADER*, long int*)': FrmRoutines.cpp:448:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:448:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int' FrmRoutines.cpp:457:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:461:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:482:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:482:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int' FrmRoutines.cpp:491:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:495:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:501:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:505:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:522:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' FrmRoutines.cpp:543:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FrmRoutines.cpp:559:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:566:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:578:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:585:82: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:592:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp: In function 'long int SaveFrameFile_New(char*, FRM_HEADER*, long int*)': FrmRoutines.cpp:634:43: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int' FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' FrmRoutines.cpp:873:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:880:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:892:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:900:87: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:910:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:920:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FrmRoutines.cpp:928:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o FrmRoutines.o >/dev/null 2>&1 mv -f .deps/FrmRoutines.Tpo .deps/FrmRoutines.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c -o FRM_LIB.lo FRM_LIB.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o .libs/FRM_LIB.o FRM_LIB.c: In function 'frm_open_file': FRM_LIB.c:134:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *' FRM_LIB.c: In function 'frm_shrink': FRM_LIB.c:589:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:591:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c: In function 'frm_convert_header_longs': FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *' FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 4 has type 'long int *' FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 5 has type 'long int *' FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 6 has type 'long int *' FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 7 has type 'long int *' FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 8 has type 'long int *' FRM_LIB.c:629:13: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' FRM_LIB.c: In function 'frm_convert_header': FRM_LIB.c:797:9: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int' FRM_LIB.c: In function 'frm_trim': FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:1021:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1023:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c: In function 'frm_truncate': FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int' FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:1106:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1108:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c: In function 'frm_reorientate': FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o FRM_LIB.o >/dev/null 2>&1 mv -f .deps/FRM_LIB.Tpo .deps/FRM_LIB.Plo /bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o libbruker.la FrmRoutines.lo FRM_LIB.lo -lm ar cru .libs/libbruker.a FrmRoutines.o FRM_LIB.o ranlib .libs/libbruker.a creating libbruker.la (cd .libs && rm -f libbruker.la && ln -s ../libbruker.la libbruker.la) make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' Making install in MAR make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c -o mar300_header.lo mar300_header.c mkdir .libs i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o .libs/mar300_header.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o mar300_header.o >/dev/null 2>&1 mv -f .deps/mar300_header.Tpo .deps/mar300_header.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c -o mar345_header.lo mar345_header.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o .libs/mar345_header.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o mar345_header.o >/dev/null 2>&1 mv -f .deps/mar345_header.Tpo .deps/mar345_header.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c -o marcif.lo marcif.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o .libs/marcif.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o marcif.o >/dev/null 2>&1 mv -f .deps/marcif.Tpo .deps/marcif.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c -o nb_header.lo nb_header.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o .libs/nb_header.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o nb_header.o >/dev/null 2>&1 mv -f .deps/nb_header.Tpo .deps/nb_header.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o .libs/swap.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o swap.o >/dev/null 2>&1 mv -f .deps/swap.Tpo .deps/swap.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o .libs/utils.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o utils.o >/dev/null 2>&1 mv -f .deps/utils.Tpo .deps/utils.Plo /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c -o pck.lo pck.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o .libs/pck.o i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o pck.o >/dev/null 2>&1 mv -f .deps/pck.Tpo .deps/pck.Plo /bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -static -o libmar.la mar300_header.lo mar345_header.lo marcif.lo nb_header.lo swap.lo utils.lo pck.lo -lm ar cru .libs/libmar.a mar300_header.o mar345_header.o marcif.o nb_header.o swap.o utils.o pck.o ranlib .libs/libmar.a creating libmar.la (cd .libs && rm -f libmar.la && ln -s ../libmar.la libmar.la) make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' Making install in Rigaku make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' /bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c -o ReadRAXISImages.lo ReadRAXISImages.cpp mkdir .libs i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o .libs/ReadRAXISImages.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o ReadRAXISImages.o >/dev/null 2>&1 mv -f .deps/ReadRAXISImages.Tpo .deps/ReadRAXISImages.Plo /bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o librigaku.la ReadRAXISImages.lo -lm ar cru .libs/librigaku.a ReadRAXISImages.o ranlib .libs/librigaku.a creating librigaku.la (cd .libs && rm -f librigaku.la && ln -s ../librigaku.la librigaku.la) make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c -o DiffractionImageJpeg.lo DiffractionImageJpeg.cpp mkdir .libs i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o DiffractionImageJpeg.o >/dev/null 2>&1 mv -f .deps/DiffractionImageJpeg.Tpo .deps/DiffractionImageJpeg.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT 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-DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o DiffractionImageADSC.o >/dev/null 2>&1 mv -f .deps/DiffractionImageADSC.Tpo .deps/DiffractionImageADSC.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c -o DiffractionImageCBF.lo DiffractionImageCBF.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o .libs/DiffractionImageCBF.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o DiffractionImageCBF.o >/dev/null 2>&1 mv -f .deps/DiffractionImageCBF.Tpo .deps/DiffractionImageCBF.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c -o DiffractionImageMAR.lo DiffractionImageMAR.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o .libs/DiffractionImageMAR.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o DiffractionImageMAR.o >/dev/null 2>&1 mv -f .deps/DiffractionImageMAR.Tpo .deps/DiffractionImageMAR.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" 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.deps/DiffractionImageRaxisDtrek.Tpo -c -o DiffractionImageRaxisDtrek.lo DiffractionImageRaxisDtrek.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o .libs/DiffractionImageRaxisDtrek.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o DiffractionImageRaxisDtrek.o >/dev/null 2>&1 mv -f .deps/DiffractionImageRaxisDtrek.Tpo .deps/DiffractionImageRaxisDtrek.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c -o DiffractionImageSaturn.lo DiffractionImageSaturn.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o .libs/DiffractionImageSaturn.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o DiffractionImageSaturn.o >/dev/null 2>&1 mv -f .deps/DiffractionImageSaturn.Tpo .deps/DiffractionImageSaturn.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include 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.libs/DiffractionImageBruker.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o DiffractionImageBruker.o >/dev/null 2>&1 mv -f .deps/DiffractionImageBruker.Tpo .deps/DiffractionImageBruker.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c -o DiffractionImageOxford.lo DiffractionImageOxford.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o .libs/DiffractionImageOxford.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o DiffractionImageOxford.o >/dev/null 2>&1 mv -f .deps/DiffractionImageOxford.Tpo .deps/DiffractionImageOxford.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 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-DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c -o DiffractionImage.lo DiffractionImage.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 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-I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o DiffractionImage.o >/dev/null 2>&1 mv -f .deps/DiffractionImage.Tpo .deps/DiffractionImage.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include 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-DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o DiffractionImageRaw.o >/dev/null 2>&1 mv -f .deps/DiffractionImageRaw.Tpo .deps/DiffractionImageRaw.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c -o DiffractionImageUtility.lo DiffractionImageUtility.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o .libs/DiffractionImageUtility.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o DiffractionImageUtility.o >/dev/null 2>&1 mv -f .deps/DiffractionImageUtility.Tpo .deps/DiffractionImageUtility.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include 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-fPIC -DPIC -o .libs/DiffractionImageCalculations.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o DiffractionImageCalculations.o >/dev/null 2>&1 mv -f .deps/DiffractionImageCalculations.Tpo .deps/DiffractionImageCalculations.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c -o DiffractionImageImgOperations.lo DiffractionImageImgOperations.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o .libs/DiffractionImageImgOperations.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o DiffractionImageImgOperations.o >/dev/null 2>&1 mv -f .deps/DiffractionImageImgOperations.Tpo .deps/DiffractionImageImgOperations.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o DiffractionImageCompare.o >/dev/null 2>&1 mv -f .deps/DiffractionImageCompare.Tpo .deps/DiffractionImageCompare.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c -o DiffractionImageAutomask.lo DiffractionImageAutomask.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 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i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o .libs/Profile.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o Profile.o >/dev/null 2>&1 mv -f .deps/Profile.Tpo .deps/Profile.Plo /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c -o Peak.lo Peak.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o .libs/Peak.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o Peak.o >/dev/null 2>&1 mv -f .deps/Peak.Tpo .deps/Peak.Plo /bin/sh ./libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c -o dps_peaksearch_cn.lo dps_peaksearch_cn.c i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o .libs/dps_peaksearch_cn.o dps_peaksearch_cn.c: In function 'dps_peaksearch_cn': dps_peaksearch_cn.c:403:2: warning: passing argument 4 of 'qsort' from incompatible pointer type /usr/include/stdlib.h:761:13: note: expected '__compar_fn_t' but argument is of type 'int (*)(struct DPS_Peak *, struct DPS_Peak *)' i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o dps_peaksearch_cn.o >/dev/null 2>&1 mv -f .deps/dps_peaksearch_cn.Tpo .deps/dps_peaksearch_cn.Plo /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o libDiffImage.la -rpath /usr/lib DiffractionImageJpeg.lo DiffractionImageADSC.lo DiffractionImageCBF.lo DiffractionImageMAR.lo DiffractionImageRAXIS.lo DiffractionImageRaxisDtrek.lo DiffractionImageSaturn.lo DiffractionImageBruker.lo DiffractionImageOxford.lo DiffractionImageTiff.lo DiffractionImage.lo DiffractionImageRaw.lo DiffractionImageUtility.lo DiffractionImageCalculations.lo DiffractionImageImgOperations.lo DiffractionImageException.lo DiffractionImageCompare.lo DiffractionImageAutomask.lo Profile.lo Peak.lo dps_peaksearch_cn.lo -lm ar cru .libs/libDiffImage.a DiffractionImageJpeg.o DiffractionImageADSC.o DiffractionImageCBF.o DiffractionImageMAR.o DiffractionImageRAXIS.o DiffractionImageRaxisDtrek.o DiffractionImageSaturn.o DiffractionImageBruker.o DiffractionImageOxford.o DiffractionImageTiff.o DiffractionImage.o DiffractionImageRaw.o DiffractionImageUtility.o DiffractionImageCalculations.o DiffractionImageImgOperations.o DiffractionImageException.o DiffractionImageCompare.o DiffractionImageAutomask.o Profile.o Peak.o dps_peaksearch_cn.o ranlib .libs/libDiffImage.a creating libDiffImage.la (cd .libs && rm -f libDiffImage.la && ln -s ../libDiffImage.la libDiffImage.la) /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c -o DiffractionImagePythonInterface.lo DiffractionImagePythonInterface.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o .libs/DiffractionImagePythonInterface.o DiffractionImagePythonInterface.cpp: In function 'void SWIG_Python_AddErrorMsg(const char*)': DiffractionImagePythonInterface.cpp:870:42: warning: format not a string literal and no format arguments i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o DiffractionImagePythonInterface.o >/dev/null 2>&1 mv -f .deps/DiffractionImagePythonInterface.Tpo .deps/DiffractionImagePythonInterface.Plo /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o lib_DiffractionImage.la -rpath /usr/lib DiffractionImagePythonInterface.lo -lm i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImagePythonInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,lib_DiffractionImage.so.0 -o .libs/lib_DiffractionImage.so.0.0.0 (cd .libs && rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0) (cd .libs && rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so) rm -fr .libs/lib_DiffractionImage.lax mkdir .libs/lib_DiffractionImage.lax rm -fr .libs/lib_DiffractionImage.lax/libbruker.a mkdir .libs/lib_DiffractionImage.lax/libbruker.a (cd .libs/lib_DiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) rm -fr .libs/lib_DiffractionImage.lax/libmar.a mkdir .libs/lib_DiffractionImage.lax/libmar.a (cd .libs/lib_DiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) rm -fr .libs/lib_DiffractionImage.lax/librigaku.a mkdir .libs/lib_DiffractionImage.lax/librigaku.a (cd .libs/lib_DiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) ar cru .libs/lib_DiffractionImage.a DiffractionImagePythonInterface.o .libs/lib_DiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/lib_DiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/lib_DiffractionImage.lax/libmar.a/mar345_header.o .libs/lib_DiffractionImage.lax/libmar.a/marcif.o .libs/lib_DiffractionImage.lax/libmar.a/pck.o .libs/lib_DiffractionImage.lax/libmar.a/swap.o .libs/lib_DiffractionImage.lax/libmar.a/mar300_header.o .libs/lib_DiffractionImage.lax/libmar.a/nb_header.o .libs/lib_DiffractionImage.lax/libmar.a/utils.o .libs/lib_DiffractionImage.lax/librigaku.a/ReadRAXISImages.o ranlib .libs/lib_DiffractionImage.a rm -fr .libs/lib_DiffractionImage.lax creating lib_DiffractionImage.la (cd .libs && rm -f lib_DiffractionImage.la && ln -s ../lib_DiffractionImage.la lib_DiffractionImage.la) /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c -o DiffractionImageTclInterface.lo DiffractionImageTclInterface.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageTclInterface.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o DiffractionImageTclInterface.o >/dev/null 2>&1 mv -f .deps/DiffractionImageTclInterface.Tpo .deps/DiffractionImageTclInterface.Plo /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o libDiffractionImage.la -rpath /usr/lib DiffractionImageTclInterface.lo -lm i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImageTclInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libDiffractionImage.so.0 -o .libs/libDiffractionImage.so.0.0.0 (cd .libs && rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0) (cd .libs && rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so) rm -fr .libs/libDiffractionImage.lax mkdir .libs/libDiffractionImage.lax rm -fr .libs/libDiffractionImage.lax/libbruker.a mkdir .libs/libDiffractionImage.lax/libbruker.a (cd .libs/libDiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) rm -fr .libs/libDiffractionImage.lax/libmar.a mkdir .libs/libDiffractionImage.lax/libmar.a (cd .libs/libDiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) rm -fr .libs/libDiffractionImage.lax/librigaku.a mkdir .libs/libDiffractionImage.lax/librigaku.a (cd .libs/libDiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) ar cru .libs/libDiffractionImage.a DiffractionImageTclInterface.o .libs/libDiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImage.lax/libmar.a/mar345_header.o .libs/libDiffractionImage.lax/libmar.a/marcif.o .libs/libDiffractionImage.lax/libmar.a/pck.o .libs/libDiffractionImage.lax/libmar.a/swap.o .libs/libDiffractionImage.lax/libmar.a/mar300_header.o .libs/libDiffractionImage.lax/libmar.a/nb_header.o .libs/libDiffractionImage.lax/libmar.a/utils.o .libs/libDiffractionImage.lax/librigaku.a/ReadRAXISImages.o ranlib .libs/libDiffractionImage.a rm -fr .libs/libDiffractionImage.lax creating libDiffractionImage.la (cd .libs && rm -f libDiffractionImage.la && ln -s ../libDiffractionImage.la libDiffractionImage.la) /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c -o DiffractionImageJavaInterface.lo DiffractionImageJavaInterface.cpp i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageJavaInterface.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o DiffractionImageJavaInterface.o >/dev/null 2>&1 mv -f .deps/DiffractionImageJavaInterface.Tpo .deps/DiffractionImageJavaInterface.Plo /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o libDiffractionImaJ.la -rpath /usr/lib DiffractionImageJavaInterface.lo -lm i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImageJavaInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libDiffractionImaJ.so.0 -o .libs/libDiffractionImaJ.so.0.0.0 (cd .libs && rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0) (cd .libs && rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so) rm -fr .libs/libDiffractionImaJ.lax mkdir .libs/libDiffractionImaJ.lax rm -fr .libs/libDiffractionImaJ.lax/libbruker.a mkdir .libs/libDiffractionImaJ.lax/libbruker.a (cd .libs/libDiffractionImaJ.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) rm -fr .libs/libDiffractionImaJ.lax/libmar.a mkdir .libs/libDiffractionImaJ.lax/libmar.a (cd .libs/libDiffractionImaJ.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) rm -fr .libs/libDiffractionImaJ.lax/librigaku.a mkdir .libs/libDiffractionImaJ.lax/librigaku.a (cd .libs/libDiffractionImaJ.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) ar cru .libs/libDiffractionImaJ.a DiffractionImageJavaInterface.o .libs/libDiffractionImaJ.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImaJ.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImaJ.lax/libmar.a/mar345_header.o .libs/libDiffractionImaJ.lax/libmar.a/marcif.o .libs/libDiffractionImaJ.lax/libmar.a/pck.o .libs/libDiffractionImaJ.lax/libmar.a/swap.o .libs/libDiffractionImaJ.lax/libmar.a/mar300_header.o .libs/libDiffractionImaJ.lax/libmar.a/nb_header.o .libs/libDiffractionImaJ.lax/libmar.a/utils.o .libs/libDiffractionImaJ.lax/librigaku.a/ReadRAXISImages.o ranlib .libs/libDiffractionImaJ.a rm -fr .libs/libDiffractionImaJ.lax creating libDiffractionImaJ.la (cd .libs && rm -f libDiffractionImaJ.la && ln -s ../libDiffractionImaJ.la libDiffractionImaJ.la) i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT automask.o -MD -MP -MF .deps/automask.Tpo -c -o automask.o automask.cpp mv -f .deps/automask.Tpo .deps/automask.Po /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o automask automask.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o automask automask.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT diffdump.o -MD -MP -MF .deps/diffdump.Tpo -c -o diffdump.o diffdump.cpp mv -f .deps/diffdump.Tpo .deps/diffdump.Po /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diffdump diffdump.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diffdump diffdump.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT printpeaks.o -MD -MP -MF .deps/printpeaks.Tpo -c -o printpeaks.o printpeaks.cpp mv -f .deps/printpeaks.Tpo .deps/printpeaks.Po /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o printpeaks printpeaks.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o printpeaks printpeaks.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT diff2jpeg.o -MD -MP -MF .deps/diff2jpeg.Tpo -c -o diff2jpeg.o diff2jpeg.cpp mv -f .deps/diff2jpeg.Tpo .deps/diff2jpeg.Po /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diff2jpeg diff2jpeg.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diff2jpeg diff2jpeg.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la' /usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la /usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la' /usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; }) /usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la /usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la' /usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; }) /usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la /usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la' /usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; }) /usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la /usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask' cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump' cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks' cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg' cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' if test -f /librx.a; then \ rm -rf rx.dir; mkdir rx.dir; \ echo 'rxdispencer routines being added to library'; \ cp /librx.a rx.dir; cd rx.dir; \ ar -x librx.a; cd ..; \ ar r libccif.a rx.dir/*.o; \ ranlib libccif.a; rm -rf rx.dir; \ fi i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm ranlib libccif.a cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib if (test -f libccif.so); then \ cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \ fi make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; fi cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_file_err.h cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_program.h cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_unitcell.h cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_errno.h cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_stats.h cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/csymlib.h cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_file.h cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/w32mvs.h cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_fortran.h cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_spg.h cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_utils.h cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_header.h cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib.h cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cvecmat.h cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/mtzdata.h cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_array.h cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_general.h cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_sysdep.h cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_vars.h cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_labels.h cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib_f.h cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/overview.h cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_errno.h cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_parser.h cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_types.h cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_data.h cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_skew.h cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmtzlib.h cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_f.h ranlib ./libccp4c.a ranlib ./libccp4f.a cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF ".deps/ssm_superpose.Tpo" -c -o ssm_superpose.lo ssm_superpose.cpp; \ then mv -f ".deps/ssm_superpose.Tpo" ".deps/ssm_superpose.Plo"; else rm -f ".deps/ssm_superpose.Tpo"; exit 1; fi mkdir .libs i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -fPIC -DPIC -o .libs/ssm_superpose.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -o ssm_superpose.o >/dev/null 2>&1 if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF ".deps/ss_csia.Tpo" -c -o ss_csia.lo ss_csia.cpp; \ then mv -f ".deps/ss_csia.Tpo" ".deps/ss_csia.Plo"; else rm -f ".deps/ss_csia.Tpo"; exit 1; fi i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -fPIC -DPIC -o .libs/ss_csia.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -o ss_csia.o >/dev/null 2>&1 if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF ".deps/ss_vxedge.Tpo" -c -o ss_vxedge.lo ss_vxedge.cpp; \ then mv -f ".deps/ss_vxedge.Tpo" ".deps/ss_vxedge.Plo"; else rm -f ".deps/ss_vxedge.Tpo"; exit 1; fi i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -fPIC -DPIC -o .libs/ss_vxedge.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -o ss_vxedge.o >/dev/null 2>&1 if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF ".deps/ssm_align.Tpo" -c -o ssm_align.lo ssm_align.cpp; \ then mv -f ".deps/ssm_align.Tpo" ".deps/ssm_align.Plo"; else rm -f ".deps/ssm_align.Tpo"; exit 1; fi i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -fPIC -DPIC -o .libs/ssm_align.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -o ssm_align.o >/dev/null 2>&1 if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF ".deps/ss_graph.Tpo" -c -o ss_graph.lo ss_graph.cpp; \ then mv -f ".deps/ss_graph.Tpo" ".deps/ss_graph.Plo"; else rm -f ".deps/ss_graph.Tpo"; exit 1; fi i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -fPIC -DPIC -o .libs/ss_graph.o i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -o ss_graph.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb -o libssm.la -rpath /usr/lib ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo -lm i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/ssm_superpose.o .libs/ss_csia.o .libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src /usr/lib/libmmdb.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libssm.so.0 -o .libs/libssm.so.0.0.0 (cd .libs && rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0) (cd .libs && rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so) ar cru .libs/libssm.a ssm_superpose.o ss_csia.o ss_vxedge.o ssm_align.o ss_graph.o ranlib .libs/libssm.a creating libssm.la (cd .libs && rm -f libssm.la && ln -s ../libssm.la libssm.la) if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT superpose.o -MD -MP -MF ".deps/superpose.Tpo" -c -o superpose.o superpose.cpp; \ then mv -f ".deps/superpose.Tpo" ".deps/superpose.Po"; else rm -f ".deps/superpose.Tpo"; exit 1; fi /bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb -o superpose superpose.o libssm.la -lm i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -o .libs/superpose superpose.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src ./.libs/libssm.so /usr/lib/libmmdb.so -lm creating superpose make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la' /usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; }) /usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la /usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose' cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm" cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_graph.h' cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_superpose.h' cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_csia.h' cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_vxedge.h' cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_align.h' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o fontpack /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/fontpack.f -L../src -L/usr/lib -lccp4f -lccp4c -lmmdb -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif -lccif -L/usr/lib -llapack -lstdc++ -lm rm -f font84.dat test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii . LD_LIBRARY_PATH="../src:../ccif" ./fontpack cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/clipper/clipper; \ make -i ; else true; fi if test -n "lib/ssm"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm; \ make -i ; else true; fi make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' if test -n "lib/DiffractionImage"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage; \ make -i ; else true; fi make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' Making all in Bruker make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' Making all in MAR make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' Making all in Rigaku make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' cd lib/data; make font84.dat make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' make[1]: Nothing to be done for `font84.dat'. make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >>> Source compiled. >>> Test phase [none]: sci-libs/ccp4-libs-6.1.3-r3 >>> Install ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ category sci-libs make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ includedir=/usr/include library_includedir=/usr/include install for i in lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i ; do (if test -f $i/Makefile; then \ if test $i = x-windows; then \ cd $i; make -i install; \ else cd $i; make install; fi; \ else true; fi) ; done make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' Making install in Bruker make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' Making install in MAR make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' Making install in Rigaku make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la' /usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la /usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la' /usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; }) /usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la /usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la' /usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; }) /usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la /usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la' /usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; }) /usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la /usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask' cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump' cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks' cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg' cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' if test -f /librx.a; then \ rm -rf rx.dir; mkdir rx.dir; \ echo 'rxdispencer routines being added to library'; \ cp /librx.a rx.dir; cd rx.dir; \ ar -x librx.a; cd ..; \ ar r libccif.a rx.dir/*.o; \ ranlib libccif.a; rm -rf rx.dir; \ fi i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm Building symbol table: LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out Loading dictionary....dictionary loaded. Starting first tree walk....tree walk completed. Starting second tree walk....tree walk completed. Grouping items in their categories....done Dumping symbol table....symbol table dumped. ranlib libccif.a cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib if (test -f libccif.so); then \ cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \ fi make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; fi cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_file_err.h cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_program.h cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_unitcell.h cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_errno.h cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_stats.h cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/csymlib.h cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_file.h cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/w32mvs.h cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_fortran.h cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_spg.h cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_utils.h cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_header.h cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib.h cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cvecmat.h cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/mtzdata.h cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_array.h cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_general.h cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_sysdep.h cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_vars.h cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_labels.h cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib_f.h cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/overview.h cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_errno.h cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_parser.h cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_types.h cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_data.h cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_skew.h cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmtzlib.h cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_f.h ranlib ./libccp4c.a ranlib ./libccp4f.a cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la' /usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0 (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; }) (cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; }) /usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la /usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose' cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose test -z "/usr/include" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm" cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_graph.h' cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_superpose.h' cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_csia.h' cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_vxedge.h' cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_align.h' make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' rm -f font84.dat test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii . LD_LIBRARY_PATH="../src:../ccif" ./fontpack cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >>> Completed installing ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ Fixing .la files usr/lib/libDiffractionImage.la usr/lib/libssm.la usr/lib/libDiffractionImaJ.la usr/lib/lib_DiffractionImage.la strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/libexec/ccp4/bin/diff2jpeg usr/libexec/ccp4/bin/printpeaks usr/libexec/ccp4/bin/diffdump usr/libexec/ccp4/bin/superpose usr/libexec/ccp4/bin/automask usr/lib/lib_DiffractionImage.so.0.0.0 usr/lib/libDiffractionImaJ.so.0.0.0 usr/lib/libDiffractionImage.so.0.0.0 usr/lib/libssm.so.0.0.0 usr/lib/libccp4f.so usr/lib/libccp4c.so usr/lib/libccif.so usr/lib/lib_DiffractionImage.a usr/lib/libccif.a usr/lib/libccp4c.a usr/lib/libDiffImage.a usr/lib/libDiffractionImage.a usr/lib/libccp4f.a usr/lib/libDiffractionImaJ.a usr/lib/libssm.a removing executable bit: usr/lib/libDiffImage.la removing executable bit: usr/lib/lib_DiffractionImage.la removing executable bit: usr/lib/libDiffractionImage.la removing executable bit: usr/lib/libDiffractionImaJ.la removing executable bit: usr/lib/libssm.la * QA Notice: Package has poor programming practices which may compile * fine but exhibit random runtime failures. * /usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer * Please do not file a Gentoo bug and instead report the above QA * issues directly to the upstream developers of this software. * Homepage: http://www.ccp4.ac.uk/