Build log

blat-34:20100914-214713.log (text/plain), 51.57 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-15 07:05:37 UTC

 * CPV:  sci-biology/blat-34
 * REPO: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking blatSrc34.zip to /var/tmp/portage/sci-biology/blat-34/work
>>> Source unpacked in /var/tmp/portage/sci-biology/blat-34/work
>>> Compiling source in /var/tmp/portage/sci-biology/blat-34/work/blatSrc ...
make -j14 MACHTYPE=i386 HOME=/var/tmp/portage/sci-biology/blat-34/work/blatSrc 
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/lib'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aliType.o -c aliType.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o apacheLog.o -c apacheLog.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o asParse.o -c asParse.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axt.o -c axt.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtAffine.o -c axtAffine.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o base64.o -c base64.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bits.o -c bits.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o binRange.o -c binRange.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastOut.o -c blastOut.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastParse.o -c blastParse.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxClump.o -c boxClump.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxLump.o -c boxLump.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o browserGfx.o -c browserGfx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cda.o -c cda.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chain.o -c chain.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainBlock.o -c chainBlock.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainConnect.o -c chainConnect.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToAxt.o -c chainToAxt.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToPsl.o -c chainToPsl.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cheapcgi.o -c cheapcgi.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o codebias.o -c codebias.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o colHash.o -c colHash.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o common.o -c common.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o correlate.o -c correlate.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dgRange.o -c dgRange.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o diGraph.o -c diGraph.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dlist.o -c dlist.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaLoad.o -c dnaLoad.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMarkov.o -c dnaMarkov.c
common.c: In function ‘firstWordInFile’:
common.c:1695:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaseq.o -c dnaseq.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnautil.o -c dnautil.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMotif.o -c dnaMotif.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dtdParse.o -c dtdParse.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dystring.o -c dystring.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o emblParse.o -c emblParse.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errabort.o -c errabort.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errCatch.o -c errCatch.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fa.o -c fa.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAli.o -c ffAli.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffScore.o -c ffScore.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o filePath.o -c filePath.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixColor.o -c fixColor.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o flydna.o -c flydna.c
errCatch.c: In function ‘errCatchFinish’:
errCatch.c:93:2: warning: format not a string literal and no format arguments
fa.c: In function ‘faReadSeq’:
fa.c:278:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fof.o -c fof.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyShow.o -c fuzzyShow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapCalc.o -c gapCalc.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gdf.o -c gdf.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gemfont.o -c gemfont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfNet.o -c gfNet.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff.o -c gff.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfxPoly.o -c gfxPoly.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifcomp.o -c gifcomp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifdecomp.o -c gifdecomp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifLabel.o -c gifLabel.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifread.o -c gifread.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifwrite.o -c gifwrite.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hash.o -c hash.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o histogram.o -c histogram.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmPfamParse.o -c hmmPfamParse.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmstats.o -c hmmstats.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmlPage.o -c htmlPage.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmshell.o -c htmshell.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o internet.o -c internet.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intExp.o -c intExp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jointalign.o -c jointalign.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jpegSize.o -c jpegSize.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o keys.o -c keys.c
htmlPage.c: In function ‘htmlPageForwardedNoAbort’:
htmlPage.c:947:5: warning: format not a string literal and no format arguments
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kxTok.o -c kxTok.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o linefile.o -c linefile.c
htmlPage.c: In function ‘htmlPageFromForm’:
htmlPage.c:1380:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
htmlPage.c:1390:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
htmlPage.c:1391:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
htmlPage.c: In function ‘htmlSlurpWithCookies’:
htmlPage.c:903:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o localmem.o -c localmem.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o log.o -c log.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o maf.o -c maf.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFromAxt.o -c mafFromAxt.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafScore.o -c mafScore.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o md5.o -c md5.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgTinyFont.o -c mgTinyFont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgSmallFont.o -c mgSmallFont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgMediumFont.o -c mgMediumFont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgLargeFont.o -c mgLargeFont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgHugeFont.o -c mgHugeFont.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memalloc.o -c memalloc.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memgfx.o -c memgfx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgCircle.o -c mgCircle.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgPolygon.o -c mgPolygon.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mime.o -c mime.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o net.o -c net.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nib.o -c nib.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibTwo.o -c nibTwo.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nt4.o -c nt4.c
net.c: In function ‘netHttpGet’:
net.c:1153:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
net.c: In function ‘netOpenHttpExt’:
net.c:569:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
net.c: In function ‘netHttpConnect’:
net.c:555:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
net.c: In function ‘sendFtpCommand’:
net.c:391:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o obscure.o -c obscure.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oldGff.o -c oldGff.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oligoTm.o -c oligoTm.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o options.o -c options.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o osunix.o -c osunix.c
options.c: In function ‘validateOption’:
options.c:64:11: warning: ignoring return value of ‘strtol’, declared with attribute warn_unused_result
options.c:72:12: warning: ignoring return value of ‘strtoll’, declared with attribute warn_unused_result
options.c:80:11: warning: ignoring return value of ‘strtod’, declared with attribute warn_unused_result
options.c:88:11: warning: ignoring return value of ‘strtod’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pairHmm.o -c pairHmm.c
obscure.c: In function ‘cpFile’:
obscure.c:235:14: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
obscure.c: In function ‘incCounterFile’:
obscure.c:24:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
obscure.c:34:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o phyloTree.o -c phyloTree.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pipeline.o -c pipeline.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o portimpl.o -c portimpl.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pscmGfx.o -c pscmGfx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psGfx.o -c psGfx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psl.o -c psl.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslGenoShow.o -c pslGenoShow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslShow.o -c pslShow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTbl.o -c pslTbl.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTransMap.o -c pslTransMap.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psPoly.o -c psPoly.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pthreadWrap.o -c pthreadWrap.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qa.o -c qa.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quickHeap.o -c quickHeap.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quotedP.o -c quotedP.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ra.o -c ra.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rangeTree.o -c rangeTree.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rbTree.o -c rbTree.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o repMask.o -c repMask.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rle.o -c rle.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rnautil.o -c rnautil.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rudp.o -c rudp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scoreWindow.o -c scoreWindow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqOut.o -c seqOut.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqStats.o -c seqStats.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servBrcMcw.o -c servBrcMcw.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcis.o -c servcis.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servCrunx.o -c servCrunx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcl.o -c servcl.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servmsII.o -c servmsII.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servpws.o -c servpws.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o shaRes.o -c shaRes.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o slog.o -c slog.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snof.o -c snof.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofmake.o -c snofmake.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofsig.o -c snofsig.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedColumn.o -c spacedColumn.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedSeed.o -c spacedSeed.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spaceSaver.o -c spaceSaver.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlNum.o -c sqlNum.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlList.o -c sqlList.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subText.o -c subText.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o synQueue.o -c synQueue.c
snof.c: In function ‘snofNameAtIx’:
snof.c:282:6: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tabRow.o -c tabRow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o textOut.o -c textOut.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tokenizer.o -c tokenizer.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trix.o -c trix.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBit.o -c twoBit.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o verbose.o -c verbose.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGfx.o -c vGfx.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGif.o -c vGif.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wildcmp.o -c wildcmp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wormdna.o -c wormdna.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xa.o -c xa.c
twoBit.c: In function ‘twoBitSeqSizeNoNs’:
twoBit.c:994:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
twoBit.c:995:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xAli.o -c xAli.c
twoBit.c: In function ‘twoBitOutNBeds’:
twoBit.c:952:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
twoBit.c:953:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
twoBit.c: In function ‘readBlockCoords’:
twoBit.c:388:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
twoBit.c:389:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xap.o -c xap.c
twoBit.c: In function ‘twoBitWriteOne’:
twoBit.c:200:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:202:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:208:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:210:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenshow.o -c xenshow.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xmlEscape.o -c xmlEscape.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xp.o -c xp.c
wormdna.c: In function ‘wormGeneRange’:
wormdna.c:1045:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
wormdna.c: In function ‘findAltSpliceRange’:
wormdna.c:974:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
wormdna.c: In function ‘wormCdnaInfo’:
wormdna.c:272:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
ar rcus i386/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o bits.o binRange.o blastOut.o blastParse.o boxClump.o boxLump.o browserGfx.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o codebias.o colHash.o common.o correlate.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaseq.o dnautil.o dnaMotif.o dtdParse.o dystring.o emblParse.o errabort.o errCatch.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o gfNet.o gff.o gfxPoly.o gifcomp.o gifdecomp.o gifLabel.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o internet.o intExp.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o mgTinyFont.o mgSmallFont.o mgMediumFont.o mgLargeFont.o mgHugeFont.o memalloc.o memgfx.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pscmGfx.o psGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o psPoly.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rangeTree.o rbTree.o repMask.o rle.o rnautil.o rudp.o scoreWindow.o seqOut.o seqStats.o servBrcMcw.o servcis.o servCrunx.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spacedColumn.o spacedSeed.o spaceSaver.o sqlNum.o sqlList.o subText.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o verbose.o vGfx.o vGif.o wildcmp.o wormdna.o xa.o xAli.o xap.o xenshow.o xmlEscape.o xp.o 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/lib'
cd jkOwnLib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/jkOwnLib'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bandExt.o -c bandExt.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crudeali.o -c crudeali.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAliHelp.o -c ffAliHelp.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffSeedExtend.o -c ffSeedExtend.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyFind.o -c fuzzyFind.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genoFind.o -c genoFind.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfBlatLib.o -c gfBlatLib.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClientLib.o -c gfClientLib.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfInternal.o -c gfInternal.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfOut.o -c gfOut.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfPcrLib.o -c gfPcrLib.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfWebLib.o -c gfWebLib.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ooc.o -c ooc.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o patSpace.o -c patSpace.c
gfBlatLib.c: In function ‘startSeqQuery’:
gfBlatLib.c:114:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfBlatLib.c:115:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result
gfBlatLib.c:118:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfPcrLib.c: In function ‘gfPcrGetRanges’:
gfPcrLib.c:398:2: warning: format not a string literal and no format arguments
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o supStitch.o -c supStitch.c
gfPcrLib.c:390:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trans3.o -c trans3.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenbig.o -c xenbig.c
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xensmall.o -c xensmall.c
ar rcus ../lib/i386/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o supStitch.o trans3.o xenbig.o xensmall.o 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/jkOwnLib'
cd blat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/blat'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blat.o -c blat.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/blat blat.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a  -lm 
#strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/blat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/blat'
cd gfClient && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfClient'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClient.o -c gfClient.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfClient gfClient.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a  -lm 
#strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfClient
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfClient'
cd gfServer && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfServer'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfServer.o -c gfServer.c
gfServer.c: In function ‘getFileList’:
gfServer.c:874:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfServer.c: In function ‘pcrServer’:
gfServer.c:840:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfServer.c: In function ‘queryServer’:
gfServer.c:787:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfServer.c:789:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result
gfServer.c:792:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfServer.c: In function ‘statusServer’:
gfServer.c:756:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gfServer.c: In function ‘stopServer’:
gfServer.c:741:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfServer gfServer.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a  -lm 
#strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfServer
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfServer'
cd hg/pslPretty && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslPretty'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslPretty.o -c pslPretty.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslPretty pslPretty.o ../../lib/i386/jkweb.a -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslPretty'
cd hg/pslReps && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslReps'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslReps.o -c pslReps.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslReps pslReps.o  ../../lib/i386/jkweb.a -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslReps'
cd hg/pslSort && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslSort'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSort.o -c pslSort.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslSort pslSort.o ../../lib/i386/jkweb.a -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslSort'
cd utils/nibFrag && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/nibFrag'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibFrag.o -c nibFrag.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/nibFrag nibFrag.o  ../../lib/i386/jkweb.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/nibFrag'
cd utils/faToNib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToNib'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToNib.o -c faToNib.c
gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToNib faToNib.o ../../lib/i386/jkweb.a -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToNib'
cd utils/faToTwoBit && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToTwoBit'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToTwoBit.o -c faToTwoBit.c
gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToTwoBit faToTwoBit.o ../../lib/i386/jkweb.a -lm
#strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToTwoBit
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToTwoBit'
cd utils/twoBitToFa && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitToFa'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitToFa.o -c twoBitToFa.c
gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitToFa twoBitToFa.o ../../lib/i386/jkweb.a -lm
##strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitToFa'
cd utils/twoBitInfo && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitInfo'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitInfo.o -c twoBitInfo.c
gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitInfo twoBitInfo.o ../../lib/i386/jkweb.a -lm
#strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitInfo
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitInfo'
cd webBlat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/webBlat'
gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o webBlat.o -c webBlat.c
gcc -O -o webBlat webBlat.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a -lm 
#strip webBlat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/webBlat'
>>> Source compiled.
>>> Test phase [none]: sci-biology/blat-34

>>> Install blat-34 into /var/tmp/portage/sci-biology/blat-34/image/ category sci-biology
>>> Completed installing blat-34 into /var/tmp/portage/sci-biology/blat-34/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/gfServer
   usr/bin/nibFrag
   usr/bin/pslSort
   usr/bin/twoBitToFa
   usr/bin/faToTwoBit
   usr/bin/pslReps
   usr/bin/pslPretty
   usr/bin/faToNib
   usr/bin/blat
   usr/bin/twoBitInfo
   usr/bin/gfClient

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/gfServer
 * /usr/bin/nibFrag
 * /usr/bin/pslSort
 * /usr/bin/twoBitToFa
 * /usr/bin/faToTwoBit
 * /usr/bin/pslReps
 * /usr/bin/pslPretty
 * /usr/bin/faToNib
 * /usr/bin/blat
 * /usr/bin/twoBitInfo
 * /usr/bin/gfClient