* CPV: sci-biology/blat-34 * REPO: gentoo * Maintainer: weaver@gentoo.org sci-biology@gentoo.org * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking blatSrc34.zip to /var/tmp/portage/sci-biology/blat-34/work >>> Source unpacked in /var/tmp/portage/sci-biology/blat-34/work >>> Compiling source in /var/tmp/portage/sci-biology/blat-34/work/blatSrc ... make -j14 MACHTYPE=i386 HOME=/var/tmp/portage/sci-biology/blat-34/work/blatSrc cd lib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/lib' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o aliType.o -c aliType.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o apacheLog.o -c apacheLog.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o asParse.o -c asParse.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axt.o -c axt.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o axtAffine.o -c axtAffine.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o base64.o -c base64.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bits.o -c bits.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o binRange.o -c binRange.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastOut.o -c blastOut.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blastParse.o -c blastParse.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxClump.o -c boxClump.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o boxLump.o -c boxLump.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o browserGfx.o -c browserGfx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cda.o -c cda.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chain.o -c chain.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainBlock.o -c chainBlock.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainConnect.o -c chainConnect.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToAxt.o -c chainToAxt.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o chainToPsl.o -c chainToPsl.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o cheapcgi.o -c cheapcgi.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o codebias.o -c codebias.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o colHash.o -c colHash.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o common.o -c common.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o correlate.o -c correlate.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dgRange.o -c dgRange.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o diGraph.o -c diGraph.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dlist.o -c dlist.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaLoad.o -c dnaLoad.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMarkov.o -c dnaMarkov.c common.c: In function ‘firstWordInFile’: common.c:1695:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaseq.o -c dnaseq.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnautil.o -c dnautil.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dnaMotif.o -c dnaMotif.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dtdParse.o -c dtdParse.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o dystring.o -c dystring.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o emblParse.o -c emblParse.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errabort.o -c errabort.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o errCatch.o -c errCatch.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fa.o -c fa.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAli.o -c ffAli.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffScore.o -c ffScore.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o filePath.o -c filePath.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fixColor.o -c fixColor.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o flydna.o -c flydna.c errCatch.c: In function ‘errCatchFinish’: errCatch.c:93:2: warning: format not a string literal and no format arguments fa.c: In function ‘faReadSeq’: fa.c:278:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fof.o -c fof.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyShow.o -c fuzzyShow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gapCalc.o -c gapCalc.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gdf.o -c gdf.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gemfont.o -c gemfont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfNet.o -c gfNet.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gff.o -c gff.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfxPoly.o -c gfxPoly.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifcomp.o -c gifcomp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifdecomp.o -c gifdecomp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifLabel.o -c gifLabel.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifread.o -c gifread.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gifwrite.o -c gifwrite.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hash.o -c hash.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o histogram.o -c histogram.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmPfamParse.o -c hmmPfamParse.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hmmstats.o -c hmmstats.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmlPage.o -c htmlPage.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o htmshell.o -c htmshell.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o internet.o -c internet.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o intExp.o -c intExp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jointalign.o -c jointalign.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o jpegSize.o -c jpegSize.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o keys.o -c keys.c htmlPage.c: In function ‘htmlPageForwardedNoAbort’: htmlPage.c:947:5: warning: format not a string literal and no format arguments gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o kxTok.o -c kxTok.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o linefile.o -c linefile.c htmlPage.c: In function ‘htmlPageFromForm’: htmlPage.c:1380:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result htmlPage.c:1390:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result htmlPage.c:1391:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result htmlPage.c: In function ‘htmlSlurpWithCookies’: htmlPage.c:903:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o localmem.o -c localmem.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o log.o -c log.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o maf.o -c maf.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafFromAxt.o -c mafFromAxt.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mafScore.o -c mafScore.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o md5.o -c md5.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgTinyFont.o -c mgTinyFont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgSmallFont.o -c mgSmallFont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgMediumFont.o -c mgMediumFont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgLargeFont.o -c mgLargeFont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgHugeFont.o -c mgHugeFont.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memalloc.o -c memalloc.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o memgfx.o -c memgfx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgCircle.o -c mgCircle.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mgPolygon.o -c mgPolygon.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o mime.o -c mime.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o net.o -c net.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nib.o -c nib.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibTwo.o -c nibTwo.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nt4.o -c nt4.c net.c: In function ‘netHttpGet’: net.c:1153:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result net.c: In function ‘netOpenHttpExt’: net.c:569:10: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result net.c: In function ‘netHttpConnect’: net.c:555:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result net.c: In function ‘sendFtpCommand’: net.c:391:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o obscure.o -c obscure.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oldGff.o -c oldGff.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o oligoTm.o -c oligoTm.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o options.o -c options.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o osunix.o -c osunix.c options.c: In function ‘validateOption’: options.c:64:11: warning: ignoring return value of ‘strtol’, declared with attribute warn_unused_result options.c:72:12: warning: ignoring return value of ‘strtoll’, declared with attribute warn_unused_result options.c:80:11: warning: ignoring return value of ‘strtod’, declared with attribute warn_unused_result options.c:88:11: warning: ignoring return value of ‘strtod’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pairHmm.o -c pairHmm.c obscure.c: In function ‘cpFile’: obscure.c:235:14: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result obscure.c: In function ‘incCounterFile’: obscure.c:24:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result obscure.c:34:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o phyloTree.o -c phyloTree.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pipeline.o -c pipeline.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o portimpl.o -c portimpl.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pscmGfx.o -c pscmGfx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psGfx.o -c psGfx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psl.o -c psl.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslGenoShow.o -c pslGenoShow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslShow.o -c pslShow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTbl.o -c pslTbl.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslTransMap.o -c pslTransMap.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o psPoly.o -c psPoly.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pthreadWrap.o -c pthreadWrap.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o qa.o -c qa.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quickHeap.o -c quickHeap.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o quotedP.o -c quotedP.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ra.o -c ra.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rangeTree.o -c rangeTree.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rbTree.o -c rbTree.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o repMask.o -c repMask.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rle.o -c rle.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rnautil.o -c rnautil.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o rudp.o -c rudp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o scoreWindow.o -c scoreWindow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqOut.o -c seqOut.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o seqStats.o -c seqStats.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servBrcMcw.o -c servBrcMcw.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcis.o -c servcis.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servCrunx.o -c servCrunx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servcl.o -c servcl.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servmsII.o -c servmsII.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o servpws.o -c servpws.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o shaRes.o -c shaRes.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o slog.o -c slog.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snof.o -c snof.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofmake.o -c snofmake.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o snofsig.o -c snofsig.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedColumn.o -c spacedColumn.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spacedSeed.o -c spacedSeed.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o spaceSaver.o -c spaceSaver.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlNum.o -c sqlNum.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o sqlList.o -c sqlList.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o subText.o -c subText.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o synQueue.o -c synQueue.c snof.c: In function ‘snofNameAtIx’: snof.c:282:6: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tabRow.o -c tabRow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o textOut.o -c textOut.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o tokenizer.o -c tokenizer.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trix.o -c trix.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBit.o -c twoBit.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o verbose.o -c verbose.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGfx.o -c vGfx.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o vGif.o -c vGif.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wildcmp.o -c wildcmp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o wormdna.o -c wormdna.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xa.o -c xa.c twoBit.c: In function ‘twoBitSeqSizeNoNs’: twoBit.c:994:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result twoBit.c:995:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xAli.o -c xAli.c twoBit.c: In function ‘twoBitOutNBeds’: twoBit.c:952:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result twoBit.c:953:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result twoBit.c: In function ‘readBlockCoords’: twoBit.c:388:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result twoBit.c:389:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xap.o -c xap.c twoBit.c: In function ‘twoBitWriteOne’: twoBit.c:200:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:202:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:208:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result twoBit.c:210:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenshow.o -c xenshow.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xmlEscape.o -c xmlEscape.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xp.o -c xp.c wormdna.c: In function ‘wormGeneRange’: wormdna.c:1045:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result wormdna.c: In function ‘findAltSpliceRange’: wormdna.c:974:14: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result wormdna.c: In function ‘wormCdnaInfo’: wormdna.c:272:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result ar rcus i386/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o bits.o binRange.o blastOut.o blastParse.o boxClump.o boxLump.o browserGfx.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o codebias.o colHash.o common.o correlate.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaseq.o dnautil.o dnaMotif.o dtdParse.o dystring.o emblParse.o errabort.o errCatch.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o gfNet.o gff.o gfxPoly.o gifcomp.o gifdecomp.o gifLabel.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o internet.o intExp.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o mgTinyFont.o mgSmallFont.o mgMediumFont.o mgLargeFont.o mgHugeFont.o memalloc.o memgfx.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pscmGfx.o psGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o psPoly.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rangeTree.o rbTree.o repMask.o rle.o rnautil.o rudp.o scoreWindow.o seqOut.o seqStats.o servBrcMcw.o servcis.o servCrunx.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spacedColumn.o spacedSeed.o spaceSaver.o sqlNum.o sqlList.o subText.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o verbose.o vGfx.o vGif.o wildcmp.o wormdna.o xa.o xAli.o xap.o xenshow.o xmlEscape.o xp.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/lib' cd jkOwnLib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/jkOwnLib' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bandExt.o -c bandExt.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o crudeali.o -c crudeali.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffAliHelp.o -c ffAliHelp.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ffSeedExtend.o -c ffSeedExtend.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o fuzzyFind.o -c fuzzyFind.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o genoFind.o -c genoFind.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfBlatLib.o -c gfBlatLib.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClientLib.o -c gfClientLib.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfInternal.o -c gfInternal.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfOut.o -c gfOut.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfPcrLib.o -c gfPcrLib.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfWebLib.o -c gfWebLib.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o ooc.o -c ooc.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o patSpace.o -c patSpace.c gfBlatLib.c: In function ‘startSeqQuery’: gfBlatLib.c:114:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfBlatLib.c:115:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result gfBlatLib.c:118:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfPcrLib.c: In function ‘gfPcrGetRanges’: gfPcrLib.c:398:2: warning: format not a string literal and no format arguments gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o supStitch.o -c supStitch.c gfPcrLib.c:390:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o trans3.o -c trans3.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xenbig.o -c xenbig.c gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o xensmall.o -c xensmall.c ar rcus ../lib/i386/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o supStitch.o trans3.o xenbig.o xensmall.o make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/jkOwnLib' cd blat && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/blat' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o blat.o -c blat.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/blat blat.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a -lm #strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/blat make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/blat' cd gfClient && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfClient' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfClient.o -c gfClient.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfClient gfClient.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a -lm #strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfClient make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfClient' cd gfServer && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfServer' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o gfServer.o -c gfServer.c gfServer.c: In function ‘getFileList’: gfServer.c:874:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfServer.c: In function ‘pcrServer’: gfServer.c:840:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfServer.c: In function ‘queryServer’: gfServer.c:787:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfServer.c:789:5: warning: ignoring return value of ‘read’, declared with attribute warn_unused_result gfServer.c:792:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfServer.c: In function ‘statusServer’: gfServer.c:756:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gfServer.c: In function ‘stopServer’: gfServer.c:741:6: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfServer gfServer.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a -lm #strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/gfServer make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/gfServer' cd hg/pslPretty && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslPretty' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslPretty.o -c pslPretty.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslPretty pslPretty.o ../../lib/i386/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslPretty' cd hg/pslReps && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslReps' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslReps.o -c pslReps.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslReps pslReps.o ../../lib/i386/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslReps' cd hg/pslSort && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslSort' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o pslSort.o -c pslSort.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/pslSort pslSort.o ../../lib/i386/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/hg/pslSort' cd utils/nibFrag && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/nibFrag' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o nibFrag.o -c nibFrag.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/nibFrag nibFrag.o ../../lib/i386/jkweb.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/nibFrag' cd utils/faToNib && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToNib' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToNib.o -c faToNib.c gcc -O -O2 -pipe -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToNib faToNib.o ../../lib/i386/jkweb.a -lm make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToNib' cd utils/faToTwoBit && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToTwoBit' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o faToTwoBit.o -c faToTwoBit.c gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToTwoBit faToTwoBit.o ../../lib/i386/jkweb.a -lm #strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/faToTwoBit make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/faToTwoBit' cd utils/twoBitToFa && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitToFa' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitToFa.o -c twoBitToFa.c gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitToFa twoBitToFa.o ../../lib/i386/jkweb.a -lm ##strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitToFa make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitToFa' cd utils/twoBitInfo && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitInfo' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o twoBitInfo.o -c twoBitInfo.c gcc -O -o /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitInfo twoBitInfo.o ../../lib/i386/jkweb.a -lm #strip /var/tmp/portage/sci-biology/blat-34/work/blatSrc/bin/i386/twoBitInfo make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/utils/twoBitInfo' cd webBlat && make make[1]: Entering directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/webBlat' gcc -O -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i386 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webBlat.o -c webBlat.c gcc -O -o webBlat webBlat.o ../lib/i386/jkOwnLib.a ../lib/i386/jkweb.a -lm #strip webBlat make[1]: Leaving directory `/var/tmp/portage/sci-biology/blat-34/work/blatSrc/webBlat' >>> Source compiled. >>> Test phase [none]: sci-biology/blat-34 >>> Install blat-34 into /var/tmp/portage/sci-biology/blat-34/image/ category sci-biology >>> Completed installing blat-34 into /var/tmp/portage/sci-biology/blat-34/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/bin/gfServer usr/bin/nibFrag usr/bin/pslSort usr/bin/twoBitToFa usr/bin/faToTwoBit usr/bin/pslReps usr/bin/pslPretty usr/bin/faToNib usr/bin/blat usr/bin/twoBitInfo usr/bin/gfClient * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/gfServer * /usr/bin/nibFrag * /usr/bin/pslSort * /usr/bin/twoBitToFa * /usr/bin/faToTwoBit * /usr/bin/pslReps * /usr/bin/pslPretty * /usr/bin/faToNib * /usr/bin/blat * /usr/bin/twoBitInfo * /usr/bin/gfClient