Build log

glimmerhmm-3.0.1:20100830-125242.log (text/plain), 25.61 KB, created by Diego Elio Pettenò (RETIRED) on 2010-08-30 12:54:11 UTC

 * CPV:  sci-biology/glimmerhmm-3.0.1
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking GlimmerHMM-3.0.1.tar.gz to /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work
>>> Compiling source in /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM ...
make -j14 -C /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources 
make: Entering directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources'
i686-pc-linux-gnu-g++ -O2 -pipe -c glimmerhmm.c
i686-pc-linux-gnu-g++ -O2 -pipe -c graph.c
i686-pc-linux-gnu-g++ -O2 -pipe -c sites.c
i686-pc-linux-gnu-g++ -O2 -pipe -c tree_util_prob.c
i686-pc-linux-gnu-g++ -O2 -pipe -c util.c
tree_util_prob.c: In function ‘tree_node* read_tree(char*)’:
tree_util_prob.c:64:51: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c:67:42: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c:70:42: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c: In function ‘tree_node* read_hp(FILE*)’:
tree_util_prob.c:192:45: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c:196:51: warning: deprecated conversion from string constant to ‘char*’
util.c: In function ‘int* ivector(int, int)’:
util.c:84:60: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c:198:66: warning: deprecated conversion from string constant to ‘char*’
util.c: In function ‘float* vector(int, int)’:
util.c:101:59: warning: deprecated conversion from string constant to ‘char*’
util.c: In function ‘double* dvector(int, int)’:
util.c:118:60: warning: deprecated conversion from string constant to ‘char*’
tree_util_prob.c:203:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
util.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
util.c:565:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
util.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
util.c:462:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
glimmerhmm.c: In function ‘int main(int, char**)’:
glimmerhmm.c:128:42: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
glimmerhmm.c: In function ‘long int printexon(List*, int*, int*, int*, long int, long int, long int, int*, long int, FILE*, char*, int, int*)’:
glimmerhmm.c:645:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:664:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:683:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:703:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:722:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:743:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:763:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c:781:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’
glimmerhmm.c: In function ‘long int datalen(FILE*, char*)’:
glimmerhmm.c:827:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
sites.c: In function ‘int Is_Donor(const int*, double*, int*, double, int, char*, int, int)’:
sites.c:338:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
sites.c: In function ‘int Is_Acceptor(const int*, double*, int*, double, int, char*, int, int)’:
sites.c:237:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c: In function ‘Site** graph(char*, long int, char*, long int*, char*, long int, int, char*, int, int)’:
graph.c:1051:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
graph.c:1062:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
graph.c:1089:65: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
graph.c:1233:93: warning: format ‘%d’ expects type ‘int*’, but argument 4 has type ‘long int*’
graph.c:1233:93: warning: format ‘%d’ expects type ‘int*’, but argument 5 has type ‘long int*’
graph.c:1233:93: warning: format ‘%e’ expects type ‘float*’, but argument 7 has type ‘double*’
graph.c:2085:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
graph.c: In function ‘int loadscaledata(double*, double*, int, char*, int*, int*)’:
graph.c:4479:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:4482:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:4484:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c: In function ‘void loadweights(double*, char*, int)’:
graph.c:4454:35: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c: In function ‘void loadmatrix(char*, double*, double**, int, int)’:
graph.c:4427:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:4432:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c: In function ‘void Read_AAC(char*, int)’:
graph.c:3931:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:3936:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:3941:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c: In function ‘Site** graph(char*, long int, char*, long int*, char*, long int, int, char*, int, int)’:
graph.c:922:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c:933:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:935:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:950:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c:961:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:963:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:978:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c:989:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:991:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:1006:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c:1017:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:1019:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2220:29: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
graph.c:2240:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2280:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2295:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2310:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2325:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
graph.c:2372:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
icm.h: In function ‘void Read_Scoring_Model(FILE*, int)’:
icm.h:167:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
icm.h: In function ‘tModel* Read_NonScoring_Model(FILE*)’:
icm.h:78:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
strarray.h: In member function ‘void String_Array::Read(FILE*)’:
strarray.h:443:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
strarray.h:446:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
strarray.h: In member function ‘void String_Array::Read(char*)’:
strarray.h:421:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
strarray.h:424:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe -o glimmerhmm glimmerhmm.o graph.o sites.o tree_util_prob.o util.o  -lm 
make: Leaving directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources'
make -j14 -C /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train 
make: Entering directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train'
i686-pc-linux-gnu-gcc -O2 -pipe -c build-icm.c
i686-pc-linux-gnu-gcc -O2 -pipe -c misc.c
i686-pc-linux-gnu-gcc -O2 -pipe -c build-icm-noframe.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o build1.o build1.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o build2.o build2.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o falsecomp.o falsecomp.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o findsites.o findsites.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o karlin.o karlin.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o score.o score.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o score2.o score2.c
misc.c: In function ‘check_realloc’:
misc.c:81:6: warning: format ‘%ld’ expects type ‘long int’, but argument 3 has type ‘size_t’
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o scoreATG.o scoreATG.c
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o scoreATG2.o scoreATG2.c
build-icm.c: In function ‘read_orfs’:
build-icm.c:757:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o scoreSTOP.o scoreSTOP.c
build-icm.c: In function ‘print_node’:
build-icm.c:672:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
build-icm.c:673:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
build-icm.c:674:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
build-icm.c: In function ‘main’:
build-icm.c:124:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
falsecomp.c: In function ‘int main(int, char**)’:
falsecomp.c:60:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:63:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
falsecomp.c:65:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:66:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:69:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
falsecomp.c:99:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:102:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
falsecomp.c:105:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:106:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
falsecomp.c:109:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o scoreSTOP2.o scoreSTOP2.c
build-icm-noframe.c: In function ‘process_options’:
build-icm-noframe.c:706:32: warning: backslash and newline separated by space
build-icm-noframe.c: In function ‘read_orfs’:
build-icm-noframe.c:757:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
build-icm-noframe.c: In function ‘print_node’:
build-icm-noframe.c:672:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
build-icm-noframe.c:673:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
build-icm-noframe.c:674:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe   -c -o erfapp.o erfapp.c
build-icm-noframe.c: In function ‘main’:
build-icm-noframe.c:124:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
findsites.c: In function ‘int main(int, char**)’:
findsites.c:130:83: warning: too few arguments for format
findsites.c:150:83: warning: too few arguments for format
findsites.c: In function ‘void readtree(char*, tree*, int)’:
findsites.c:344:86: warning: too few arguments for format
findsites.c:353:87: warning: too few arguments for format
findsites.c: In function ‘int main(int, char**)’:
findsites.c:131:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
findsites.c:151:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
karlin.c: In function ‘int main(int, char**)’:
karlin.c:79:78: warning: too few arguments for format
karlin.c: In function ‘void split(tree*, char*, char*)’:
karlin.c:297:86: warning: too few arguments for format
karlin.c:311:87: warning: too few arguments for format
score2.c: In function ‘int main(int, char**)’:
score2.c:125:83: warning: too few arguments for format
score.c: In function ‘int main(int, char**)’:
score.c:124:83: warning: too few arguments for format
score.c:280:83: warning: too few arguments for format
score2.c:281:83: warning: too few arguments for format
score.c: In function ‘void readtree(char*, tree*, int)’:
score.c:481:86: warning: too few arguments for format
score.c:490:87: warning: too few arguments for format
score2.c: In function ‘void readtree(char*, tree*, int)’:
score2.c:482:86: warning: too few arguments for format
score2.c:491:87: warning: too few arguments for format
scoreATG.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
scoreATG.c:550:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreATG.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
scoreATG.c:447:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
score2.c: In function ‘int main(int, char**)’:
score2.c:126:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
score2.c:282:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreATG2.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
scoreATG2.c:550:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
score.c: In function ‘int main(int, char**)’:
score.c:125:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
score.c:281:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreATG2.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
scoreATG2.c:447:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe -c splicescore.c
scoreSTOP.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
scoreSTOP.c:551:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreSTOP.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
scoreSTOP.c:448:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreSTOP2.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
scoreSTOP2.c:551:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
scoreSTOP2.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
scoreSTOP2.c:448:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe -c sites.c
i686-pc-linux-gnu-g++ -O2 -pipe -c utils.c
i686-pc-linux-gnu-gcc -o build-icm-noframe build-icm-noframe.o misc.o -lm
i686-pc-linux-gnu-g++ build2.c -o build2 -lm
sites.c: In function ‘int Is_Donor(const int*, double*, double, int)’:
sites.c:223:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
sites.c: In function ‘int Is_Acceptor(const int*, double*, double, int)’:
sites.c:153:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ falsecomp.c -o falsecomp -lm
i686-pc-linux-gnu-g++ scoreATG2.c -o scoreATG2 -lm
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu  erfapp.o   -o erfapp
utils.c: In function ‘int* ivector(int, int)’:
utils.c:84:60: warning: deprecated conversion from string constant to ‘char*’
utils.c: In function ‘float* vector(int, int)’:
utils.c:101:59: warning: deprecated conversion from string constant to ‘char*’
utils.c: In function ‘double* dvector(int, int)’:
utils.c:118:60: warning: deprecated conversion from string constant to ‘char*’
utils.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’:
utils.c:565:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
utils.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’:
utils.c:462:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ build1.c -o build1 -lm
i686-pc-linux-gnu-g++ karlin.c -o karlin -lm
i686-pc-linux-gnu-g++ scoreATG.c -o scoreATG -lm
i686-pc-linux-gnu-g++ scoreSTOP.c -o scoreSTOP -lm
i686-pc-linux-gnu-gcc -o build-icm build-icm.o misc.o -lm
i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu  scoreSTOP2.o   -o scoreSTOP2
i686-pc-linux-gnu-g++ findsites.c -o findsites -lm
karlin.c: In function ‘int main(int, char**)’:
karlin.c:79:78: warning: too few arguments for format
karlin.c: In function ‘void split(tree*, char*, char*)’:
karlin.c:297:86: warning: too few arguments for format
karlin.c:311:87: warning: too few arguments for format
i686-pc-linux-gnu-g++ score2.c -o score2 -lm
i686-pc-linux-gnu-g++ score.c -o score -lm
findsites.c: In function ‘int main(int, char**)’:
findsites.c:130:83: warning: too few arguments for format
findsites.c:150:83: warning: too few arguments for format
findsites.c: In function ‘void readtree(char*, tree*, int)’:
findsites.c:344:86: warning: too few arguments for format
findsites.c:353:87: warning: too few arguments for format
score2.c: In function ‘int main(int, char**)’:
score2.c:125:83: warning: too few arguments for format
score2.c:281:83: warning: too few arguments for format
score2.c: In function ‘void readtree(char*, tree*, int)’:
score2.c:482:86: warning: too few arguments for format
score2.c:491:87: warning: too few arguments for format
score.c: In function ‘int main(int, char**)’:
score.c:124:83: warning: too few arguments for format
score.c:280:83: warning: too few arguments for format
score.c: In function ‘void readtree(char*, tree*, int)’:
score.c:481:86: warning: too few arguments for format
score.c:490:87: warning: too few arguments for format
i686-pc-linux-gnu-g++ splicescore.o sites.o utils.o -o splicescore -lm
make: Leaving directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train'
>>> Source compiled.
>>> Test phase [none]: sci-biology/glimmerhmm-3.0.1

>>> Install glimmerhmm-3.0.1 into /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image/ category sci-biology
>>> Completed installing glimmerhmm-3.0.1 into /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image/

 * Tinderbox QA Warning! ELF files in /usr/share
 TYPE   FILE 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build-icm 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build1 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build2 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreATG 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/splicescore 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreSTOP2 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreATG2 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/falsecomp 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreSTOP 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/score2 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build-icm-noframe 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/findsites 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/score 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/karlin 
ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/erfapp 
 * Tinderbox QA Warning (end)! ELF files in /usr/share
strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/share/glimmerhmm/training_utils/build-icm
   usr/share/glimmerhmm/training_utils/build1
   usr/share/glimmerhmm/training_utils/build2
   usr/share/glimmerhmm/training_utils/scoreATG
   usr/share/glimmerhmm/training_utils/splicescore
   usr/share/glimmerhmm/training_utils/scoreSTOP2
   usr/share/glimmerhmm/training_utils/scoreATG2
   usr/share/glimmerhmm/training_utils/falsecomp
   usr/share/glimmerhmm/training_utils/scoreSTOP
   usr/share/glimmerhmm/training_utils/score2
   usr/share/glimmerhmm/training_utils/build-icm-noframe
   usr/share/glimmerhmm/training_utils/findsites
   usr/share/glimmerhmm/training_utils/score
   usr/share/glimmerhmm/training_utils/karlin
   usr/share/glimmerhmm/training_utils/erfapp
   usr/bin/glimmerhmm

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/share/glimmerhmm/training_utils/build-icm
 * /usr/share/glimmerhmm/training_utils/build1
 * /usr/share/glimmerhmm/training_utils/build2
 * /usr/share/glimmerhmm/training_utils/scoreATG
 * /usr/share/glimmerhmm/training_utils/splicescore
 * /usr/share/glimmerhmm/training_utils/scoreATG2
 * /usr/share/glimmerhmm/training_utils/falsecomp
 * /usr/share/glimmerhmm/training_utils/scoreSTOP
 * /usr/share/glimmerhmm/training_utils/score2
 * /usr/share/glimmerhmm/training_utils/build-icm-noframe
 * /usr/share/glimmerhmm/training_utils/findsites
 * /usr/share/glimmerhmm/training_utils/score
 * /usr/share/glimmerhmm/training_utils/karlin
 * /usr/bin/glimmerhmm

 * Gentoo contact information ...
herds:
    sci-biology
maintainers:
    [e-mail]