* CPV: sci-biology/glimmerhmm-3.0.1 * REPO: gentoo * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking GlimmerHMM-3.0.1.tar.gz to /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work >>> Source unpacked in /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work >>> Compiling source in /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM ... make -j14 -C /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources make: Entering directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources' i686-pc-linux-gnu-g++ -O2 -pipe -c glimmerhmm.c i686-pc-linux-gnu-g++ -O2 -pipe -c graph.c i686-pc-linux-gnu-g++ -O2 -pipe -c sites.c i686-pc-linux-gnu-g++ -O2 -pipe -c tree_util_prob.c i686-pc-linux-gnu-g++ -O2 -pipe -c util.c tree_util_prob.c: In function ‘tree_node* read_tree(char*)’: tree_util_prob.c:64:51: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c:67:42: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c:70:42: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c: In function ‘tree_node* read_hp(FILE*)’: tree_util_prob.c:192:45: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c:196:51: warning: deprecated conversion from string constant to ‘char*’ util.c: In function ‘int* ivector(int, int)’: util.c:84:60: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c:198:66: warning: deprecated conversion from string constant to ‘char*’ util.c: In function ‘float* vector(int, int)’: util.c:101:59: warning: deprecated conversion from string constant to ‘char*’ util.c: In function ‘double* dvector(int, int)’: util.c:118:60: warning: deprecated conversion from string constant to ‘char*’ tree_util_prob.c:203:26: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result util.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: util.c:565:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result util.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: util.c:462:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result glimmerhmm.c: In function ‘int main(int, char**)’: glimmerhmm.c:128:42: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ glimmerhmm.c: In function ‘long int printexon(List*, int*, int*, int*, long int, long int, long int, int*, long int, FILE*, char*, int, int*)’: glimmerhmm.c:645:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:664:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:683:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:703:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:722:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:743:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:763:146: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c:781:148: warning: format ‘%7d’ expects type ‘int’, but argument 7 has type ‘long int’ glimmerhmm.c: In function ‘long int datalen(FILE*, char*)’: glimmerhmm.c:827:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result sites.c: In function ‘int Is_Donor(const int*, double*, int*, double, int, char*, int, int)’: sites.c:338:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result sites.c: In function ‘int Is_Acceptor(const int*, double*, int*, double, int, char*, int, int)’: sites.c:237:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c: In function ‘Site** graph(char*, long int, char*, long int*, char*, long int, int, char*, int, int)’: graph.c:1051:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ graph.c:1062:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ graph.c:1089:65: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ graph.c:1233:93: warning: format ‘%d’ expects type ‘int*’, but argument 4 has type ‘long int*’ graph.c:1233:93: warning: format ‘%d’ expects type ‘int*’, but argument 5 has type ‘long int*’ graph.c:1233:93: warning: format ‘%e’ expects type ‘float*’, but argument 7 has type ‘double*’ graph.c:2085:63: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ graph.c: In function ‘int loadscaledata(double*, double*, int, char*, int*, int*)’: graph.c:4479:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:4482:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:4484:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c: In function ‘void loadweights(double*, char*, int)’: graph.c:4454:35: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c: In function ‘void loadmatrix(char*, double*, double**, int, int)’: graph.c:4427:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:4432:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c: In function ‘void Read_AAC(char*, int)’: graph.c:3931:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:3936:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:3941:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c: In function ‘Site** graph(char*, long int, char*, long int*, char*, long int, int, char*, int, int)’: graph.c:922:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c:933:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:935:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:950:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c:961:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:963:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:978:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c:989:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:991:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:1006:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c:1017:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:1019:31: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2220:29: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result graph.c:2240:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2280:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2295:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2310:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2325:28: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result graph.c:2372:22: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result icm.h: In function ‘void Read_Scoring_Model(FILE*, int)’: icm.h:167:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result icm.h: In function ‘tModel* Read_NonScoring_Model(FILE*)’: icm.h:78:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result strarray.h: In member function ‘void String_Array::Read(FILE*)’: strarray.h:443:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result strarray.h:446:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result strarray.h: In member function ‘void String_Array::Read(char*)’: strarray.h:421:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result strarray.h:424:34: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -o glimmerhmm glimmerhmm.o graph.o sites.o tree_util_prob.o util.o -lm make: Leaving directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/sources' make -j14 -C /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train make: Entering directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train' i686-pc-linux-gnu-gcc -O2 -pipe -c build-icm.c i686-pc-linux-gnu-gcc -O2 -pipe -c misc.c i686-pc-linux-gnu-gcc -O2 -pipe -c build-icm-noframe.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o build1.o build1.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o build2.o build2.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o falsecomp.o falsecomp.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o findsites.o findsites.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o karlin.o karlin.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o score.o score.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o score2.o score2.c misc.c: In function ‘check_realloc’: misc.c:81:6: warning: format ‘%ld’ expects type ‘long int’, but argument 3 has type ‘size_t’ i686-pc-linux-gnu-g++ -O2 -pipe -c -o scoreATG.o scoreATG.c i686-pc-linux-gnu-g++ -O2 -pipe -c -o scoreATG2.o scoreATG2.c build-icm.c: In function ‘read_orfs’: build-icm.c:757:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -c -o scoreSTOP.o scoreSTOP.c build-icm.c: In function ‘print_node’: build-icm.c:672:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result build-icm.c:673:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result build-icm.c:674:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result build-icm.c: In function ‘main’: build-icm.c:124:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result falsecomp.c: In function ‘int main(int, char**)’: falsecomp.c:60:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:63:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result falsecomp.c:65:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:66:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:69:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result falsecomp.c:99:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:102:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result falsecomp.c:105:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:106:24: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result falsecomp.c:109:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -c -o scoreSTOP2.o scoreSTOP2.c build-icm-noframe.c: In function ‘process_options’: build-icm-noframe.c:706:32: warning: backslash and newline separated by space build-icm-noframe.c: In function ‘read_orfs’: build-icm-noframe.c:757:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result build-icm-noframe.c: In function ‘print_node’: build-icm-noframe.c:672:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result build-icm-noframe.c:673:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result build-icm-noframe.c:674:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -c -o erfapp.o erfapp.c build-icm-noframe.c: In function ‘main’: build-icm-noframe.c:124:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result findsites.c: In function ‘int main(int, char**)’: findsites.c:130:83: warning: too few arguments for format findsites.c:150:83: warning: too few arguments for format findsites.c: In function ‘void readtree(char*, tree*, int)’: findsites.c:344:86: warning: too few arguments for format findsites.c:353:87: warning: too few arguments for format findsites.c: In function ‘int main(int, char**)’: findsites.c:131:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result findsites.c:151:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result karlin.c: In function ‘int main(int, char**)’: karlin.c:79:78: warning: too few arguments for format karlin.c: In function ‘void split(tree*, char*, char*)’: karlin.c:297:86: warning: too few arguments for format karlin.c:311:87: warning: too few arguments for format score2.c: In function ‘int main(int, char**)’: score2.c:125:83: warning: too few arguments for format score.c: In function ‘int main(int, char**)’: score.c:124:83: warning: too few arguments for format score.c:280:83: warning: too few arguments for format score2.c:281:83: warning: too few arguments for format score.c: In function ‘void readtree(char*, tree*, int)’: score.c:481:86: warning: too few arguments for format score.c:490:87: warning: too few arguments for format score2.c: In function ‘void readtree(char*, tree*, int)’: score2.c:482:86: warning: too few arguments for format score2.c:491:87: warning: too few arguments for format scoreATG.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: scoreATG.c:550:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreATG.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: scoreATG.c:447:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result score2.c: In function ‘int main(int, char**)’: score2.c:126:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result score2.c:282:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreATG2.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: scoreATG2.c:550:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result score.c: In function ‘int main(int, char**)’: score.c:125:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result score.c:281:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreATG2.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: scoreATG2.c:447:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -c splicescore.c scoreSTOP.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: scoreSTOP.c:551:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreSTOP.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: scoreSTOP.c:448:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreSTOP2.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: scoreSTOP2.c:551:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result scoreSTOP2.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: scoreSTOP2.c:448:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -O2 -pipe -c sites.c i686-pc-linux-gnu-g++ -O2 -pipe -c utils.c i686-pc-linux-gnu-gcc -o build-icm-noframe build-icm-noframe.o misc.o -lm i686-pc-linux-gnu-g++ build2.c -o build2 -lm sites.c: In function ‘int Is_Donor(const int*, double*, double, int)’: sites.c:223:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result sites.c: In function ‘int Is_Acceptor(const int*, double*, double, int)’: sites.c:153:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ falsecomp.c -o falsecomp -lm i686-pc-linux-gnu-g++ scoreATG2.c -o scoreATG2 -lm i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu erfapp.o -o erfapp utils.c: In function ‘int* ivector(int, int)’: utils.c:84:60: warning: deprecated conversion from string constant to ‘char*’ utils.c: In function ‘float* vector(int, int)’: utils.c:101:59: warning: deprecated conversion from string constant to ‘char*’ utils.c: In function ‘double* dvector(int, int)’: utils.c:118:60: warning: deprecated conversion from string constant to ‘char*’ utils.c: In function ‘int Read_Multi_String(FILE*, char*&, long int&, char*, int, int)’: utils.c:565:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result utils.c: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: utils.c:462:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ build1.c -o build1 -lm i686-pc-linux-gnu-g++ karlin.c -o karlin -lm i686-pc-linux-gnu-g++ scoreATG.c -o scoreATG -lm i686-pc-linux-gnu-g++ scoreSTOP.c -o scoreSTOP -lm i686-pc-linux-gnu-gcc -o build-icm build-icm.o misc.o -lm i686-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu scoreSTOP2.o -o scoreSTOP2 i686-pc-linux-gnu-g++ findsites.c -o findsites -lm karlin.c: In function ‘int main(int, char**)’: karlin.c:79:78: warning: too few arguments for format karlin.c: In function ‘void split(tree*, char*, char*)’: karlin.c:297:86: warning: too few arguments for format karlin.c:311:87: warning: too few arguments for format i686-pc-linux-gnu-g++ score2.c -o score2 -lm i686-pc-linux-gnu-g++ score.c -o score -lm findsites.c: In function ‘int main(int, char**)’: findsites.c:130:83: warning: too few arguments for format findsites.c:150:83: warning: too few arguments for format findsites.c: In function ‘void readtree(char*, tree*, int)’: findsites.c:344:86: warning: too few arguments for format findsites.c:353:87: warning: too few arguments for format score2.c: In function ‘int main(int, char**)’: score2.c:125:83: warning: too few arguments for format score2.c:281:83: warning: too few arguments for format score2.c: In function ‘void readtree(char*, tree*, int)’: score2.c:482:86: warning: too few arguments for format score2.c:491:87: warning: too few arguments for format score.c: In function ‘int main(int, char**)’: score.c:124:83: warning: too few arguments for format score.c:280:83: warning: too few arguments for format score.c: In function ‘void readtree(char*, tree*, int)’: score.c:481:86: warning: too few arguments for format score.c:490:87: warning: too few arguments for format i686-pc-linux-gnu-g++ splicescore.o sites.o utils.o -o splicescore -lm make: Leaving directory `/var/tmp/portage/sci-biology/glimmerhmm-3.0.1/work/GlimmerHMM/train' >>> Source compiled. >>> Test phase [none]: sci-biology/glimmerhmm-3.0.1 >>> Install glimmerhmm-3.0.1 into /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image/ category sci-biology >>> Completed installing glimmerhmm-3.0.1 into /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image/ * Tinderbox QA Warning! ELF files in /usr/share TYPE FILE ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build-icm ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build1 ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build2 ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreATG ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/splicescore ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreSTOP2 ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreATG2 ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/falsecomp ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/scoreSTOP ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/score2 ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/build-icm-noframe ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/findsites ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/score ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/karlin ET_EXEC /var/tmp/portage/sci-biology/glimmerhmm-3.0.1/image//usr/share/glimmerhmm/training_utils/erfapp * Tinderbox QA Warning (end)! ELF files in /usr/share strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/share/glimmerhmm/training_utils/build-icm usr/share/glimmerhmm/training_utils/build1 usr/share/glimmerhmm/training_utils/build2 usr/share/glimmerhmm/training_utils/scoreATG usr/share/glimmerhmm/training_utils/splicescore usr/share/glimmerhmm/training_utils/scoreSTOP2 usr/share/glimmerhmm/training_utils/scoreATG2 usr/share/glimmerhmm/training_utils/falsecomp usr/share/glimmerhmm/training_utils/scoreSTOP usr/share/glimmerhmm/training_utils/score2 usr/share/glimmerhmm/training_utils/build-icm-noframe usr/share/glimmerhmm/training_utils/findsites usr/share/glimmerhmm/training_utils/score usr/share/glimmerhmm/training_utils/karlin usr/share/glimmerhmm/training_utils/erfapp usr/bin/glimmerhmm  * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/share/glimmerhmm/training_utils/build-icm * /usr/share/glimmerhmm/training_utils/build1 * /usr/share/glimmerhmm/training_utils/build2 * /usr/share/glimmerhmm/training_utils/scoreATG * /usr/share/glimmerhmm/training_utils/splicescore * /usr/share/glimmerhmm/training_utils/scoreATG2 * /usr/share/glimmerhmm/training_utils/falsecomp * /usr/share/glimmerhmm/training_utils/scoreSTOP * /usr/share/glimmerhmm/training_utils/score2 * /usr/share/glimmerhmm/training_utils/build-icm-noframe * /usr/share/glimmerhmm/training_utils/findsites * /usr/share/glimmerhmm/training_utils/score * /usr/share/glimmerhmm/training_utils/karlin * /usr/bin/glimmerhmm  * Gentoo contact information ... herds: sci-biology maintainers: weaver@gentoo.org