build.log

build.log (text/plain), 8.96 KB, created by urcindalo on 2010-02-04 18:43:41 UTC

>>> [1m[37mcfg-update-1.8.2-r1[0m[0m: Checksum index is up-to-date ...
 [32;01m*[0m CPV:  sci-chemistry/autodock-4.2.3
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  amd64 elibc_glibc kernel_linux multilib userland_GNU
>>> Unpacking source...
>>> Unpacking autodocksuite-4.2.3-src.tar.gz to /var/tmp/portage/sci-chemistry/autodock-4.2.3/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock' ...
 [32;01m*[0m Running aclocal ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid' ...
 [32;01m*[0m Running aclocal ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy ...
[A[137C  [34;01m[ [32;01mok[34;01m ][0m
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking for a BSD-compatible install... /usr/bin/install -c
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for sqrt in -lm... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for pow... yes
checking for round... yes
checking for sqrt... yes
checking for strncasecmp... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: linking ../autodock/read_parameter_library.cc to read_parameter_library.cpp
config.status: executing depfiles commands
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
make -j3 -C autodock 
make: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
/bin/sh: csh: command not found
make: *** [default_parameters.h] Error 127
make: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
 [31;01m*[0m ERROR: sci-chemistry/autodock-4.2.3 failed:
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  54:  Called src_compile
 [31;01m*[0m   environment, line 2895:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake -C autodock || die;
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-chemistry/autodock-4.2.3',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-chemistry/autodock-4.2.3'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.3/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.3/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src'