>>> cfg-update-1.8.2-r1: Checksum index is up-to-date ... * CPV: sci-chemistry/autodock-4.2.3 * REPO: gentoo * USE: amd64 elibc_glibc kernel_linux multilib userland_GNU >>> Unpacking source... >>> Unpacking autodocksuite-4.2.3-src.tar.gz to /var/tmp/portage/sci-chemistry/autodock-4.2.3/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work >>> Preparing source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ... /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src * Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock' ... * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running automake --add-missing --copy ...  [ ok ] /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src * Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid' ... * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running automake --add-missing --copy ...  [ ok ] /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ... /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gawk... (cached) gawk checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 checking for a BSD-compatible install... /usr/bin/install -c checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for pow... no checking for sqrt... no checking for strncasecmp... yes configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking for sqrt in -lm... yes checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for pow... yes checking for round... yes checking for sqrt... yes checking for strncasecmp... yes configure: creating ./config.status config.status: creating Makefile config.status: linking ../autodock/read_parameter_library.cc to read_parameter_library.cpp config.status: executing depfiles commands /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ... make -j3 -C autodock make: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock' rm -f default_parameters.h csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h /bin/sh: csh: command not found make: *** [default_parameters.h] Error 127 make: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock' * ERROR: sci-chemistry/autodock-4.2.3 failed: * (no error message) * * Call stack: * ebuild.sh, line 54: Called src_compile * environment, line 2895: Called die * The specific snippet of code: * emake -C autodock || die; * * If you need support, post the output of 'emerge --info =sci-chemistry/autodock-4.2.3', * the complete build log and the output of 'emerge -pqv =sci-chemistry/autodock-4.2.3'. * The complete build log is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.3/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src'