ppc64 failure

gromacs-ppc64-failbuild.log (text/plain), 36.77 KB, created by Brent Baude (RETIRED) on 2010-01-21 16:35:10 UTC

 [32;01m*[0m You need one of these Fortran Compilers: gfortran g77
 [32;01m*[0m Installed are:  gfortran
>>> Unpacking source...
>>> Unpacking gromacs-4.0.5.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work
>>> Unpacking gmxtest-4.0.4.tgz to /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work
 [32;01m*[0m Applying patches for selected FORTRAN compiler: gfortran
>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5 ...
 [32;01m*[0m Applying gromacs-4.0.4-sparc-cyclecounter.patch ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5' ...
 [32;01m*[0m Running aclocal ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running true --copy --force --install --automake ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoheader ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --foreign ...
[A[111C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: gromacs-4.0.5/config
 [32;01m*[0m   Applying install-sh-1.5.4.patch ...
 [32;01m*[0m   Applying portage-1.5.10.patch ...
 [32;01m*[0m   Applying sed-1.5.6.patch ...
 [32;01m*[0m   Applying as-needed-1.5.26.patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work ...
 [32;01m*[0m Configuring Single Precison Gromacs
 * econf: updating gromacs-4.0.5-single/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating gromacs-4.0.5-single/config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=powerpc64-unknown-linux-gnu --host=powerpc64-unknown-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib64 --docdir=/usr/share/doc/gromacs-4.0.5 --without-dmalloc --with-fft=fftw3 --without-gsl --disable-mpi --with-x --with-xml --disable-all-static --disable-bluegene --disable-fortran --enable-float --program-suffix=''
checking build system type... powerpc64-unknown-linux-gnu
checking host system type... powerpc64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking for powerpc64-unknown-linux-gnu-cc... no
checking for powerpc64-unknown-linux-gnu-icc... no
checking for powerpc64-unknown-linux-gnu-xlc... no
checking for powerpc64-unknown-linux-gnu-gcc... powerpc64-unknown-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -g... yes
checking for powerpc64-unknown-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of powerpc64-unknown-linux-gnu-gcc... gcc3
checking dependency style of powerpc64-unknown-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... powerpc64-unknown-linux-gnu-gcc -E
checking whether powerpc64-unknown-linux-gnu-gcc accepts -O3... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -maltivec... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -mabi=altivec... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -mcpu=7450... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -mtune=970... yes
checking whether powerpc64-unknown-linux-gnu-gcc accepts -std=gnu99... yes
******************************************
* Using CFLAGS from environment variable *
******************************************
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... yes
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking size of off_t... 8
checking that size_t can hold pointers... yes
checking floating-point format... IEEE754 (big-endian byte and word order)
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by powerpc64-unknown-linux-gnu-gcc... /usr/powerpc64-unknown-linux-gnu/bin/ld
checking if the linker (/usr/powerpc64-unknown-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/powerpc64-unknown-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for powerpc64-unknown-linux-gnu-g++... powerpc64-unknown-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether powerpc64-unknown-linux-gnu-g++ accepts -g... yes
checking dependency style of powerpc64-unknown-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... powerpc64-unknown-linux-gnu-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from powerpc64-unknown-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for powerpc64-unknown-linux-gnu-ar... powerpc64-unknown-linux-gnu-ar
checking for powerpc64-unknown-linux-gnu-ranlib... powerpc64-unknown-linux-gnu-ranlib
checking for powerpc64-unknown-linux-gnu-strip... powerpc64-unknown-linux-gnu-strip
checking if powerpc64-unknown-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for powerpc64-unknown-linux-gnu-gcc option to produce PIC... -fPIC
checking if powerpc64-unknown-linux-gnu-gcc PIC flag -fPIC works... yes
checking if powerpc64-unknown-linux-gnu-gcc static flag -static works... yes
checking if powerpc64-unknown-linux-gnu-gcc supports -c -o file.o... yes
checking whether the powerpc64-unknown-linux-gnu-gcc linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes
checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by powerpc64-unknown-linux-gnu-g++... /usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc
checking if the linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) is GNU ld... yes
checking whether the powerpc64-unknown-linux-gnu-g++ linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes
checking for powerpc64-unknown-linux-gnu-g++ option to produce PIC... -fPIC
checking if powerpc64-unknown-linux-gnu-g++ PIC flag -fPIC works... yes
checking if powerpc64-unknown-linux-gnu-g++ static flag -static works... yes
checking if powerpc64-unknown-linux-gnu-g++ supports -c -o file.o... yes
checking whether the powerpc64-unknown-linux-gnu-g++ linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes
checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
checking for fftw3.h... yes
checking for main in -lfftw3f... yes
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... yes
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for bool... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking libxml/parser.h usability... yes
checking libxml/parser.h presence... yes
checking for libxml/parser.h... yes
checking for main in -lxml2... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for uid_t in sys/types.h... yes
checking for inline... inline
checking altivec.h usability... yes
checking altivec.h presence... yes
checking for altivec.h... yes
checking whether the compiler supports altivec extensions... yes
checking whether byte ordering is bigendian... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/kernel/Makefile
config.status: creating src/tools/Makefile
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands

* On most platforms you can save 10X space with dynamic libraries, although
  the binaries might be less portable. Why not try --enable-shared ?

>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work ...
 [32;01m*[0m Building Single Precison Gromacs
make -j6 
Making all in include
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include'
Making all in .
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include'
Making all in types
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include/types'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include/types'
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include'
Making all in src
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src'
make  all-recursive
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src'
Making all in gmxlib
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib'
Making all in nonbonded
make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded'
Making all in nb_kernel_ppc_altivec
make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded/nb_kernel_ppc_altivec'
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel010_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel010_ppc_altivec.Tpo -c -o nb_kernel010_ppc_altivec.lo nb_kernel010_ppc_altivec.c
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel030_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel030_ppc_altivec.Tpo -c -o nb_kernel030_ppc_altivec.lo nb_kernel030_ppc_altivec.c
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel100_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel100_ppc_altivec.Tpo -c -o nb_kernel100_ppc_altivec.lo nb_kernel100_ppc_altivec.c
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel101_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel101_ppc_altivec.Tpo -c -o nb_kernel101_ppc_altivec.lo nb_kernel101_ppc_altivec.c
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel102_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel102_ppc_altivec.Tpo -c -o nb_kernel102_ppc_altivec.lo nb_kernel102_ppc_altivec.c
/bin/sh ../../../../libtool --tag=CC   --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec  -O2 -pipe -MT nb_kernel103_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel103_ppc_altivec.Tpo -c -o nb_kernel103_ppc_altivec.lo nb_kernel103_ppc_altivec.c
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel102_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel102_ppc_altivec.Tpo -c nb_kernel102_ppc_altivec.c -o nb_kernel102_ppc_altivec.o
In file included from nb_kernel102_ppc_altivec.c:27:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel101_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel101_ppc_altivec.Tpo -c nb_kernel101_ppc_altivec.c -o nb_kernel101_ppc_altivec.o
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel030_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel030_ppc_altivec.Tpo -c nb_kernel030_ppc_altivec.c -o nb_kernel030_ppc_altivec.o
In file included from nb_kernel101_ppc_altivec.c:26:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
In file included from nb_kernel102_ppc_altivec.c:28:
nb_kernel102_ppc_altivec.h: At top level:
nb_kernel102_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel102_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel102_ppc_altivec.c:33: error: expected ';', ',' or ')' before 'p_nri'
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel100_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel100_ppc_altivec.Tpo -c nb_kernel100_ppc_altivec.c -o nb_kernel100_ppc_altivec.o
nb_kernel102_ppc_altivec.c:867: error: expected ';', ',' or ')' before 'p_nri'
In file included from nb_kernel030_ppc_altivec.c:26:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
make[5]: *** [nb_kernel102_ppc_altivec.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel010_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel010_ppc_altivec.Tpo -c nb_kernel010_ppc_altivec.c -o nb_kernel010_ppc_altivec.o
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
In file included from nb_kernel101_ppc_altivec.c:27:
nb_kernel101_ppc_altivec.h: At top level:
nb_kernel101_ppc_altivec.h:43: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel101_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel101_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel101_ppc_altivec.c:410: error: expected ';', ',' or ')' before 'p_nri'
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
In file included from nb_kernel100_ppc_altivec.c:26:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
make[5]: *** [nb_kernel101_ppc_altivec.lo] Error 1
In file included from nb_kernel030_ppc_altivec.c:27:
nb_kernel030_ppc_altivec.h: At top level:
nb_kernel030_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel030_ppc_altivec.h:69: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel030_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel030_ppc_altivec.c:235: error: expected ';', ',' or ')' before 'p_nri'
 powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel103_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel103_ppc_altivec.Tpo -c nb_kernel103_ppc_altivec.c -o nb_kernel103_ppc_altivec.o
In file included from nb_kernel100_ppc_altivec.c:27:
nb_kernel100_ppc_altivec.h: At top level:
nb_kernel100_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel100_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel100_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel100_ppc_altivec.c:219: error: expected ';', ',' or ')' before 'p_nri'
make[5]: *** [nb_kernel030_ppc_altivec.lo] Error 1
make[5]: *** [nb_kernel100_ppc_altivec.lo] Error 1
In file included from nb_kernel103_ppc_altivec.c:26:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
In file included from nb_kernel010_ppc_altivec.c:27:
ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat':
ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_4_4atoms':
ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_3_4atoms':
ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_2_4atoms':
ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size
ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'load_1_4atoms':
ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'update_i_4atoms_forces':
ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_4_4atoms':
ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_3_4atoms':
ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_2_4atoms':
ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size
ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
ppc_altivec_util.h: In function 'add_force_to_1_4atoms':
ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size
In file included from nb_kernel010_ppc_altivec.c:28:
nb_kernel010_ppc_altivec.h: At top level:
nb_kernel010_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel010_ppc_altivec.h:69: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel010_ppc_altivec.c:32: error: expected ';', ',' or ')' before 'p_nri'
In file included from nb_kernel103_ppc_altivec.c:27:
nb_kernel103_ppc_altivec.h: At top level:
nb_kernel103_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel103_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel103_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel010_ppc_altivec.c:241: error: expected ';', ',' or ')' before 'p_nri'
nb_kernel103_ppc_altivec.c:414: error: expected ';', ',' or ')' before 'p_nri'
make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1
make[5]: *** [nb_kernel103_ppc_altivec.lo] Error 1
make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded/nb_kernel_ppc_altivec'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src'
make: *** [all-recursive] Error 1
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-chemistry/gromacs-4.0.5 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line 2958:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m           emake || die "Single Precision emake failed";
 [31;01m*[0m  The die message:
 [31;01m*[0m   Single Precision emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/temp/environment'.
 [31;01m*[0m