* You need one of these Fortran Compilers: gfortran g77 * Installed are: gfortran >>> Unpacking source... >>> Unpacking gromacs-4.0.5.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work >>> Unpacking gmxtest-4.0.4.tgz to /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work * Applying patches for selected FORTRAN compiler: gfortran >>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work >>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5 ... * Applying gromacs-4.0.4-sparc-cyclecounter.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5' ... * Running aclocal ...  [ ok ] * Running true --copy --force --install --automake ...  [ ok ] * Running aclocal ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy --foreign ...  [ ok ] * Running elibtoolize in: gromacs-4.0.5/config * Applying install-sh-1.5.4.patch ... * Applying portage-1.5.10.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-1.5.26.patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work ... * Configuring Single Precison Gromacs * econf: updating gromacs-4.0.5-single/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating gromacs-4.0.5-single/config/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=powerpc64-unknown-linux-gnu --host=powerpc64-unknown-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib64 --docdir=/usr/share/doc/gromacs-4.0.5 --without-dmalloc --with-fft=fftw3 --without-gsl --disable-mpi --with-x --with-xml --disable-all-static --disable-bluegene --disable-fortran --enable-float --program-suffix='' checking build system type... powerpc64-unknown-linux-gnu checking host system type... powerpc64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking for powerpc64-unknown-linux-gnu-cc... no checking for powerpc64-unknown-linux-gnu-icc... no checking for powerpc64-unknown-linux-gnu-xlc... no checking for powerpc64-unknown-linux-gnu-gcc... powerpc64-unknown-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -g... yes checking for powerpc64-unknown-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of powerpc64-unknown-linux-gnu-gcc... gcc3 checking dependency style of powerpc64-unknown-linux-gnu-gcc... gcc3 checking how to run the C preprocessor... powerpc64-unknown-linux-gnu-gcc -E checking whether powerpc64-unknown-linux-gnu-gcc accepts -O3... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -maltivec... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -mabi=altivec... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -mcpu=7450... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -mtune=970... yes checking whether powerpc64-unknown-linux-gnu-gcc accepts -std=gnu99... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... yes checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (big-endian byte and word order) checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by powerpc64-unknown-linux-gnu-gcc... /usr/powerpc64-unknown-linux-gnu/bin/ld checking if the linker (/usr/powerpc64-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/powerpc64-unknown-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for powerpc64-unknown-linux-gnu-g++... powerpc64-unknown-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether powerpc64-unknown-linux-gnu-g++ accepts -g... yes checking dependency style of powerpc64-unknown-linux-gnu-g++... gcc3 checking how to run the C++ preprocessor... powerpc64-unknown-linux-gnu-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from powerpc64-unknown-linux-gnu-gcc object... ok checking for objdir... .libs checking for powerpc64-unknown-linux-gnu-ar... powerpc64-unknown-linux-gnu-ar checking for powerpc64-unknown-linux-gnu-ranlib... powerpc64-unknown-linux-gnu-ranlib checking for powerpc64-unknown-linux-gnu-strip... powerpc64-unknown-linux-gnu-strip checking if powerpc64-unknown-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for powerpc64-unknown-linux-gnu-gcc option to produce PIC... -fPIC checking if powerpc64-unknown-linux-gnu-gcc PIC flag -fPIC works... yes checking if powerpc64-unknown-linux-gnu-gcc static flag -static works... yes checking if powerpc64-unknown-linux-gnu-gcc supports -c -o file.o... yes checking whether the powerpc64-unknown-linux-gnu-gcc linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by powerpc64-unknown-linux-gnu-g++... /usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc checking if the linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) is GNU ld... yes checking whether the powerpc64-unknown-linux-gnu-g++ linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes checking for powerpc64-unknown-linux-gnu-g++ option to produce PIC... -fPIC checking if powerpc64-unknown-linux-gnu-g++ PIC flag -fPIC works... yes checking if powerpc64-unknown-linux-gnu-g++ static flag -static works... yes checking if powerpc64-unknown-linux-gnu-g++ supports -c -o file.o... yes checking whether the powerpc64-unknown-linux-gnu-g++ linker (/usr/powerpc64-unknown-linux-gnu/bin/ld -m elf64ppc) supports shared libraries... yes checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3f... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... yes checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for main in -lxml2... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking altivec.h usability... yes checking altivec.h presence... yes checking for altivec.h... yes checking whether the compiler supports altivec extensions... yes checking whether byte ordering is bigendian... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands * On most platforms you can save 10X space with dynamic libraries, although the binaries might be less portable. Why not try --enable-shared ? >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.0.5/work ... * Building Single Precison Gromacs make -j6 Making all in include make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include' Making all in . make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include' Making all in types make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include/types' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include/types' make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/include' Making all in src make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src' make all-recursive make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src' Making all in gmxlib make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib' Making all in nonbonded make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded' Making all in nb_kernel_ppc_altivec make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded/nb_kernel_ppc_altivec' /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel010_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel010_ppc_altivec.Tpo -c -o nb_kernel010_ppc_altivec.lo nb_kernel010_ppc_altivec.c /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel030_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel030_ppc_altivec.Tpo -c -o nb_kernel030_ppc_altivec.lo nb_kernel030_ppc_altivec.c /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel100_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel100_ppc_altivec.Tpo -c -o nb_kernel100_ppc_altivec.lo nb_kernel100_ppc_altivec.c /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel101_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel101_ppc_altivec.Tpo -c -o nb_kernel101_ppc_altivec.lo nb_kernel101_ppc_altivec.c /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel102_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel102_ppc_altivec.Tpo -c -o nb_kernel102_ppc_altivec.lo nb_kernel102_ppc_altivec.c /bin/sh ../../../../libtool --tag=CC --mode=compile powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel103_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel103_ppc_altivec.Tpo -c -o nb_kernel103_ppc_altivec.lo nb_kernel103_ppc_altivec.c powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel102_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel102_ppc_altivec.Tpo -c nb_kernel102_ppc_altivec.c -o nb_kernel102_ppc_altivec.o In file included from nb_kernel102_ppc_altivec.c:27: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel101_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel101_ppc_altivec.Tpo -c nb_kernel101_ppc_altivec.c -o nb_kernel101_ppc_altivec.o ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel030_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel030_ppc_altivec.Tpo -c nb_kernel030_ppc_altivec.c -o nb_kernel030_ppc_altivec.o In file included from nb_kernel101_ppc_altivec.c:26: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size In file included from nb_kernel102_ppc_altivec.c:28: nb_kernel102_ppc_altivec.h: At top level: nb_kernel102_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri' nb_kernel102_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri' nb_kernel102_ppc_altivec.c:33: error: expected ';', ',' or ')' before 'p_nri' powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel100_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel100_ppc_altivec.Tpo -c nb_kernel100_ppc_altivec.c -o nb_kernel100_ppc_altivec.o nb_kernel102_ppc_altivec.c:867: error: expected ';', ',' or ')' before 'p_nri' In file included from nb_kernel030_ppc_altivec.c:26: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size make[5]: *** [nb_kernel102_ppc_altivec.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel010_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel010_ppc_altivec.Tpo -c nb_kernel010_ppc_altivec.c -o nb_kernel010_ppc_altivec.o ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size In file included from nb_kernel101_ppc_altivec.c:27: nb_kernel101_ppc_altivec.h: At top level: nb_kernel101_ppc_altivec.h:43: error: expected ';', ',' or ')' before 'p_nri' nb_kernel101_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri' nb_kernel101_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri' nb_kernel101_ppc_altivec.c:410: error: expected ';', ',' or ')' before 'p_nri' ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size In file included from nb_kernel100_ppc_altivec.c:26: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size make[5]: *** [nb_kernel101_ppc_altivec.lo] Error 1 In file included from nb_kernel030_ppc_altivec.c:27: nb_kernel030_ppc_altivec.h: At top level: nb_kernel030_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri' nb_kernel030_ppc_altivec.h:69: error: expected ';', ',' or ')' before 'p_nri' nb_kernel030_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri' nb_kernel030_ppc_altivec.c:235: error: expected ';', ',' or ')' before 'p_nri' powerpc64-unknown-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../../src -I/usr/include/libxml2 -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -maltivec -mabi=altivec -O2 -pipe -MT nb_kernel103_ppc_altivec.lo -MD -MP -MF .deps/nb_kernel103_ppc_altivec.Tpo -c nb_kernel103_ppc_altivec.c -o nb_kernel103_ppc_altivec.o In file included from nb_kernel100_ppc_altivec.c:27: nb_kernel100_ppc_altivec.h: At top level: nb_kernel100_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri' nb_kernel100_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri' nb_kernel100_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri' nb_kernel100_ppc_altivec.c:219: error: expected ';', ',' or ')' before 'p_nri' make[5]: *** [nb_kernel030_ppc_altivec.lo] Error 1 make[5]: *** [nb_kernel100_ppc_altivec.lo] Error 1 In file included from nb_kernel103_ppc_altivec.c:26: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size In file included from nb_kernel010_ppc_altivec.c:27: ppc_altivec_util.h: In function 'load_1_4atoms_shift_and_splat': ppc_altivec_util.h:1192: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_4_4atoms': ppc_altivec_util.h:1387: warning: cast from pointer to integer of different size ppc_altivec_util.h:1399: warning: cast from pointer to integer of different size ppc_altivec_util.h:1411: warning: cast from pointer to integer of different size ppc_altivec_util.h:1423: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_3_4atoms': ppc_altivec_util.h:1610: warning: cast from pointer to integer of different size ppc_altivec_util.h:1622: warning: cast from pointer to integer of different size ppc_altivec_util.h:1634: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_2_4atoms': ppc_altivec_util.h:1796: warning: cast from pointer to integer of different size ppc_altivec_util.h:1808: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'load_1_4atoms': ppc_altivec_util.h:1932: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'update_i_4atoms_forces': ppc_altivec_util.h:2118: warning: cast from pointer to integer of different size ppc_altivec_util.h:2179: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_4_4atoms': ppc_altivec_util.h:2416: warning: cast from pointer to integer of different size ppc_altivec_util.h:2441: warning: cast from pointer to integer of different size ppc_altivec_util.h:2465: warning: cast from pointer to integer of different size ppc_altivec_util.h:2489: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_3_4atoms': ppc_altivec_util.h:2709: warning: cast from pointer to integer of different size ppc_altivec_util.h:2734: warning: cast from pointer to integer of different size ppc_altivec_util.h:2758: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_2_4atoms': ppc_altivec_util.h:2942: warning: cast from pointer to integer of different size ppc_altivec_util.h:2967: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size ppc_altivec_util.h: In function 'add_force_to_1_4atoms': ppc_altivec_util.h:3131: warning: cast from pointer to integer of different size In file included from nb_kernel010_ppc_altivec.c:28: nb_kernel010_ppc_altivec.h: At top level: nb_kernel010_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri' nb_kernel010_ppc_altivec.h:69: error: expected ';', ',' or ')' before 'p_nri' nb_kernel010_ppc_altivec.c:32: error: expected ';', ',' or ')' before 'p_nri' In file included from nb_kernel103_ppc_altivec.c:27: nb_kernel103_ppc_altivec.h: At top level: nb_kernel103_ppc_altivec.h:42: error: expected ';', ',' or ')' before 'p_nri' nb_kernel103_ppc_altivec.h:70: error: expected ';', ',' or ')' before 'p_nri' nb_kernel103_ppc_altivec.c:31: error: expected ';', ',' or ')' before 'p_nri' nb_kernel010_ppc_altivec.c:241: error: expected ';', ',' or ')' before 'p_nri' nb_kernel103_ppc_altivec.c:414: error: expected ';', ',' or ')' before 'p_nri' make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1 make[5]: *** [nb_kernel103_ppc_altivec.lo] Error 1 make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded/nb_kernel_ppc_altivec' make[4]: *** [all-recursive] Error 1 make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib/nonbonded' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src/gmxlib' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.5/work/gromacs-4.0.5-single/src' make: *** [all-recursive] Error 1 * * ERROR: sci-chemistry/gromacs-4.0.5 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 2958: Called die * The specific snippet of code: * emake || die "Single Precision emake failed"; * The die message: * Single Precision emake failed * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.5/temp/environment'. *