/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/build.log

build.log (text/plain), 13.20 KB, created by Juergen Rose on 2009-12-14 12:30:39 UTC

 [32;01m*[0m CPV:  sci-mathematics/octave-forge-miscellaneous-1.0.9
 [32;01m*[0m REPO: science
 [32;01m*[0m USE:  amd64 elibc_glibc kernel_linux multilib userland_GNU
>>> Unpacking source...
>>> Source unpacked in /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work
>>> Compiling source in /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work ...
 [32;01m*[0m Compiling octave-forge-miscellaneous-1.0.9. Please be patient ....
[?1034hans = /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work
mkdir (/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB)
untar (miscellaneous-1.0.9.tar.gz, /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB)
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for mkoctfile... mkoctfile
retrieving compile and link flags from mkoctfile
checking for F77_FUNC... yes
checking for octave... octave
checking for OCTAVE_VERSION in Octave... 3.2.3
checking for octave_config_info('canonical_host_type') in Octave... x86_64-pc-linux-gnu
checking for octave_config_info('SHLEXT') in Octave... so
checking whether ln -s works... yes
checking for ranlib... x86_64-pc-linux-gnu-ranlib
checking for strip... strip
checking for fork... yes
checking for socklen_t... yes
checking for octave_function(void)... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking term.h usability... yes
checking term.h presence... yes
checking for term.h... yes
checking termcap.h usability... yes
checking termcap.h presence... yes
checking for termcap.h... yes
checking for tgetnum in -ltermcap... no
configure: creating ./config.status
config.status: creating Makeconf
 
  "$prefix" is /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9
  "$exec_prefix" is ${prefix}

octave commands will install into the following directories:
   m-files:   /usr/share/octave/3.2.3/site/m/octave-forge
   oct-files: /usr/libexec/octave/3.2.3/site/oct/x86_64-pc-linux-gnu/octave-forge
   binaries:  /usr/libexec/octave/3.2.3/site/exec/x86_64-pc-linux-gnu
alternatives:
   m-files:   /usr/share/octave/3.2.3/site/octave-forge-alternatives/m
   oct-files: /usr/libexec/octave/3.2.3/site/octave-forge-alternatives/oct/x86_64-pc-linux-gnu

shell commands will install into the following directories:
   binaries:  ${exec_prefix}/bin
   man pages: ${datarootdir}/man
   libraries: ${exec_prefix}/lib
   headers:   ${prefix}/include

octave-forge is configured with
   octave:      octave (version 3.2.3)
   mkoctfile:	mkoctfile for Octave 3
  have term.h or termcap.h: yes

find . -name NOINSTALL -print    # shows which toolboxes won't be installed

xmltree_read.l: In function 'xml_lex':
xmltree_read.l:818: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result
make: Entering directory `/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src'
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H waitbar.cc 
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H waitbar.cc -o waitbar.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o waitbar.oct waitbar.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmlread.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmlread.cc -o xmlread.o
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmltree_read.c
x86_64-pc-linux-gnu-gcc -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -march=nocona -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmltree_read.c -o xmltree_read.o
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmltree.c
x86_64-pc-linux-gnu-gcc -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -march=nocona -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmltree.c -o xmltree.o
mkoctfile -DHAVE_OCTAVE_32 -v xmlread.o xmltree_read.o xmltree.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o xmlread.oct xmlread.o xmltree_read.o xmltree.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H hex2num.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H hex2num.cc -o hex2num.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o hex2num.oct hex2num.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csvexplode.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csvexplode.cc -o csvexplode.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csvexplode.oct csvexplode.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csv2cell.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csv2cell.cc -o csv2cell.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csv2cell.oct csv2cell.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csvconcat.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csvconcat.cc -o csvconcat.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csvconcat.oct csvconcat.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H cell2csv.cc
x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H cell2csv.cc -o cell2csv.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o cell2csv.oct cell2csv.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm
make: Leaving directory `/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src'
copyfile /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/cell2csv.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csv2cell.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csvconcat.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csvexplode.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/hex2num.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/waitbar.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/xmlread.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/inst/x86_64-pc-linux-gnu-api-v37
warning: load_path: /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37: No such file or directory
/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37/cell2csv.oct: undefined symbol: _ZN3MPI3Win4FreeEv
error: called from `gen_doc_cache>create_cache' in file /usr/share/octave/3.2.3/m/help/gen_doc_cache.m near line 90, column 17
error: called from:
error:   /usr/share/octave/3.2.3/m/pkg/pkg.m at line 756, column 5
error:   /usr/share/octave/3.2.3/m/pkg/pkg.m at line 287, column 7
error:   /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/octave-install.V27W5ZlYkt at line 2, column 1
warning: load_path: /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37: No such file or directory

 [31;01m*[0m ERROR: sci-mathematics/octave-forge-miscellaneous-1.0.9 failed:
 [31;01m*[0m   Failed to compile package
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   61:  Called src_compile
 [31;01m*[0m   environment, line 2553:  Called octave-forge_src_compile
 [31;01m*[0m   environment, line 2377:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${OCT_BINARY}" -q "${OCT_TMP}" || die "Failed to compile package";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-mathematics/octave-forge-miscellaneous-1.0.9',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-mathematics/octave-forge-miscellaneous-1.0.9'.
 [31;01m*[0m This ebuild used the following eclasses from overlays:
 [31;01m*[0m   /usr/local/portage/layman/science/eclass/octave-forge.eclass
 [31;01m*[0m This ebuild is from an overlay named 'science': '/usr/local/portage/layman/science/'
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9'