* CPV: sci-mathematics/octave-forge-miscellaneous-1.0.9 * REPO: science * USE: amd64 elibc_glibc kernel_linux multilib userland_GNU >>> Unpacking source... >>> Source unpacked in /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work >>> Compiling source in /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work ... * Compiling octave-forge-miscellaneous-1.0.9. Please be patient .... [?1034hans = /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work mkdir (/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB) untar (miscellaneous-1.0.9.tar.gz, /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB) checking for gcc... x86_64-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for mkoctfile... mkoctfile retrieving compile and link flags from mkoctfile checking for F77_FUNC... yes checking for octave... octave checking for OCTAVE_VERSION in Octave... 3.2.3 checking for octave_config_info('canonical_host_type') in Octave... x86_64-pc-linux-gnu checking for octave_config_info('SHLEXT') in Octave... so checking whether ln -s works... yes checking for ranlib... x86_64-pc-linux-gnu-ranlib checking for strip... strip checking for fork... yes checking for socklen_t... yes checking for octave_function(void)... yes checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking term.h usability... yes checking term.h presence... yes checking for term.h... yes checking termcap.h usability... yes checking termcap.h presence... yes checking for termcap.h... yes checking for tgetnum in -ltermcap... no configure: creating ./config.status config.status: creating Makeconf "$prefix" is /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9 "$exec_prefix" is ${prefix} octave commands will install into the following directories: m-files: /usr/share/octave/3.2.3/site/m/octave-forge oct-files: /usr/libexec/octave/3.2.3/site/oct/x86_64-pc-linux-gnu/octave-forge binaries: /usr/libexec/octave/3.2.3/site/exec/x86_64-pc-linux-gnu alternatives: m-files: /usr/share/octave/3.2.3/site/octave-forge-alternatives/m oct-files: /usr/libexec/octave/3.2.3/site/octave-forge-alternatives/oct/x86_64-pc-linux-gnu shell commands will install into the following directories: binaries: ${exec_prefix}/bin man pages: ${datarootdir}/man libraries: ${exec_prefix}/lib headers: ${prefix}/include octave-forge is configured with octave: octave (version 3.2.3) mkoctfile: mkoctfile for Octave 3 have term.h or termcap.h: yes find . -name NOINSTALL -print # shows which toolboxes won't be installed xmltree_read.l: In function 'xml_lex': xmltree_read.l:818: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result make: Entering directory `/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src' mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H waitbar.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H waitbar.cc -o waitbar.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o waitbar.oct waitbar.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmlread.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmlread.cc -o xmlread.o mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmltree_read.c x86_64-pc-linux-gnu-gcc -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -march=nocona -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmltree_read.c -o xmltree_read.o mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H -c xmltree.c x86_64-pc-linux-gnu-gcc -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -march=nocona -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H xmltree.c -o xmltree.o mkoctfile -DHAVE_OCTAVE_32 -v xmlread.o xmltree_read.o xmltree.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o xmlread.oct xmlread.o xmltree_read.o xmltree.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H hex2num.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H hex2num.cc -o hex2num.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o hex2num.oct hex2num.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csvexplode.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csvexplode.cc -o csvexplode.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csvexplode.oct csvexplode.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csv2cell.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csv2cell.cc -o csv2cell.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csv2cell.oct csv2cell.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H csvconcat.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H csvconcat.cc -o csvconcat.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o csvconcat.oct csvconcat.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm mkoctfile -DHAVE_OCTAVE_32 -v -DUSE_TERM -DHAVE_TERMCAP_H cell2csv.cc x86_64-pc-linux-gnu-g++ -c -fPIC -I/usr/include/octave-3.2.3 -I/usr/include/octave-3.2.3/octave -I/usr/include/freetype2 -O2 -pipe -DHAVE_OCTAVE_32 -DUSE_TERM -DHAVE_TERMCAP_H cell2csv.cc -o cell2csv.o x86_64-pc-linux-gnu-g++ -shared -Wl,-Bsymbolic -o cell2csv.oct cell2csv.o -L/usr/lib64/octave-3.2.3 -L/usr/lib64 -loctinterp -loctave -lcruft -Wl,-O1 -llapack -lblas -lblas -lfftw3 -lfftw3f -lreadline -lncurses -ldl -lhdf5 -lz -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.2/../../.. -lhdf5 -lz -lgfortranbegin -lgfortran -lm make: Leaving directory `/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src' copyfile /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/cell2csv.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csv2cell.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csvconcat.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/csvexplode.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/hex2num.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/waitbar.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/src/xmlread.oct /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/oct-wV8GcB/miscellaneous-1.0.9/inst/x86_64-pc-linux-gnu-api-v37 warning: load_path: /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37: No such file or directory /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37/cell2csv.oct: undefined symbol: _ZN3MPI3Win4FreeEv error: called from `gen_doc_cache>create_cache' in file /usr/share/octave/3.2.3/m/help/gen_doc_cache.m near line 90, column 17 error: called from: error: /usr/share/octave/3.2.3/m/pkg/pkg.m at line 756, column 5 error: /usr/share/octave/3.2.3/m/pkg/pkg.m at line 287, column 7 error: /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/octave-install.V27W5ZlYkt at line 2, column 1 warning: load_path: /var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9/x86_64-pc-linux-gnu-api-v37: No such file or directory * ERROR: sci-mathematics/octave-forge-miscellaneous-1.0.9 failed: * Failed to compile package * * Call stack: * ebuild.sh, line 61: Called src_compile * environment, line 2553: Called octave-forge_src_compile * environment, line 2377: Called die * The specific snippet of code: * "${OCT_BINARY}" -q "${OCT_TMP}" || die "Failed to compile package"; * * If you need support, post the output of 'emerge --info =sci-mathematics/octave-forge-miscellaneous-1.0.9', * the complete build log and the output of 'emerge -pqv =sci-mathematics/octave-forge-miscellaneous-1.0.9'. * This ebuild used the following eclasses from overlays: * /usr/local/portage/layman/science/eclass/octave-forge.eclass * This ebuild is from an overlay named 'science': '/usr/local/portage/layman/science/' * The complete build log is located at '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/temp/environment'. * S: '/var/tmp/portage/sci-mathematics/octave-forge-miscellaneous-1.0.9/work/miscellaneous-1.0.9'