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Gentoo's Bugzilla – Attachment 212656 Details for
Bug 296174
sci-libs/netcdf fails on parallel make
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netcdf build log
netcdf-build.log (text/plain), 33.42 KB, created by
MarisN
on 2009-12-10 23:23:32 UTC
(
hide
)
Description:
netcdf build log
Filename:
MIME Type:
Creator:
MarisN
Created:
2009-12-10 23:23:32 UTC
Size:
33.42 KB
patch
obsolete
> [32;01m*[0m CPV: sci-libs/netcdf-4.0.1 > [32;01m*[0m REPO: gentoo > [32;01m*[0m USE: amd64 elibc_glibc fortran kernel_linux multilib userland_GNU >>>> Unpacking source... >>>> Unpacking netcdf-4.0.1.tar.gz to /var/tmp/portage/sci-libs/netcdf-4.0.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/netcdf-4.0.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... > [32;01m*[0m Applying netcdf-4.0.1-as-needed.patch ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' ... > [32;01m*[0m Running aclocal -I m4 ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running libtoolize --copy --force --install --automake ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal -I m4 ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --foreign ... >[A[149C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: netcdf-4.0.1 > [32;01m*[0m Applying portage-2.2.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-2.2.6.patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... > * econf: updating netcdf-4.0.1/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating netcdf-4.0.1/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --docdir=/usr/share/doc/netcdf-4.0.1 --enable-shared --enable-f77 --enable-f90 --enable-separate-fortran --disable-netcdf-4 --disable-ncgen4 --disable-docs-install >configure: netCDF 4.0.1 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >configure: checking user options >checking whether CXX is set to ''... no >checking whether FC is set to ''... no >checking whether F90 is set to ''... no >checking whether a NCIO_MINBLOCKSIZE was specified... 256 >checking whether this is a netCDF-4.x build... yes >checking whether extra valgrind tests should be run... no >configure: Processing NetCDF-4 options. >checking whether netCDF-4 is to be built... no >checking whether new netCDF-4 C++ API is to be built... no >checking whether HDF5 should do data conversions... no >checking whether extra example tests should be run... no >checking whether parallel IO tests should be run... no >checking whether a location for the HDF5 library was specified... >checking whether a location for the ZLIB library was specified... >checking whether a location for the SZLIB library was specified... >checking whether a default cache size for HDF5 was specified... 32000000 >checking whether a default cache maximum number of elements for HDF5 was specified... 1000 >checking whether a default cache preemption for HDF5 was specified... 0.75 >checking whether netCDF-4 logging is enabled... no >checking whether DAP client is to be built... no >checking whether dap remote testing should be enabled... no >checking whether netCDF extra tests should be run (developers only)... no >checking whether documentation is to be installed... no >checking whether Fortran compiler(s) should be tested during configure... yes >checking whether FFIO will be used... no >checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes >checking whether only the C library is desired... no >checking whether examples should be built... yes >checking whether F77 API is desired... yes >checking whether F90 API is desired... yes >checking whether fortran type sizes should be checked... yes >checking whether C API is desired... yes >checking where to get netCDF C-only library for separate fortran libraries... >checking whether CXX API is desired... yes >checking whether v2 netCDF API should be built... yes >checking whether the ncgen/ncdump should be built... yes >checking whether large file (> 2GB) tests should be run... no >checking whether benchmaks should be run (experimental)... no >checking whether extreme numbers should be used in tests... yes >checking where to put large temp files if large file tests are run... . >checking whether a win32 DLL is desired... no >checking whether separate fortran libs are desired... yes >configure: finding C compiler >checking for x86_64-pc-linux-gnu-xlc... no >checking for x86_64-pc-linux-gnu-cc... no >checking for x86_64-pc-linux-gnu-c89... no >checking for x86_64-pc-linux-gnu-acc... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 >checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking for an ANSI C-conforming const... yes >configure: finding Fortran compiler (will not be used if Fortran API is not desired) >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-fort... no >checking for x86_64-pc-linux-gnu-xlf95... no >checking for x86_64-pc-linux-gnu-ifort... no >checking for x86_64-pc-linux-gnu-ifc... no >checking for x86_64-pc-linux-gnu-efc... no >checking for x86_64-pc-linux-gnu-pgf95... no >checking for x86_64-pc-linux-gnu-lf95... no >checking for x86_64-pc-linux-gnu-g95... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-fort... no >checking for x86_64-pc-linux-gnu-xlf95... no >checking for x86_64-pc-linux-gnu-ifort... no >checking for x86_64-pc-linux-gnu-ifc... no >checking for x86_64-pc-linux-gnu-efc... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-lf95... no >checking for x86_64-pc-linux-gnu-g95... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >configure: setting up Fortran 90 >checking for Fortran flag to compile .f90 files... none >checking fortran 90 modules inclusion flag... -I >checking if Fortran compiler can handle Fortran-90... yes >configure: finding C++ compiler (will not be used if C++ API is not desired) >checking for x86_64-pc-linux-gnu-cl... no >checking for x86_64-pc-linux-gnu-KCC... no >checking for x86_64-pc-linux-gnu-CC... no >checking for x86_64-pc-linux-gnu-cxx... no >checking for x86_64-pc-linux-gnu-cc++... no >checking for x86_64-pc-linux-gnu-xlC... no >checking for x86_64-pc-linux-gnu-aCC... no >checking for x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-c++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-c++... gcc3 >configure: setting up libtool >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-c++ accepts -g... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-c++... (cached) gcc3 >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-c++ -E >checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for ld used by x86_64-pc-linux-gnu-c++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-c++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-c++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >configure: finding other utilities >configure: trying to set fortran flags for this platform >checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >configure: displaying some results >checking CPPFLAGS... >checking CC CFLAGS... x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb >checking type x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc >checking CXX... x86_64-pc-linux-gnu-c++ >checking CXXFLAGS... -march=nocona -O2 -pipe -ggdb >checking type x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++ >checking FC... x86_64-pc-linux-gnu-gfortran >checking FFLAGS... -g -O2 >checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran >checking F90... x86_64-pc-linux-gnu-gfortran >checking FCFLAGS... -g -O2 >checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran >checking AR... x86_64-pc-linux-gnu-ar >checking AR_FLAGS... cru >checking type x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar >checking NM... /usr/bin/nm -B >checking NMFLAGS... >checking for /usr/bin/nm... /usr/bin/nm -B >checking nm flags... >checking for C-equivalent to Fortran routine "SUB"... sub_ >checking for Fortran "byte"... yes >checking for Fortran "integer*2"... yes >checking if Fortran "byte" is C "signed char"... yes >checking if Fortran "byte" is C "short"... no >checking if Fortran "byte" is C "int"... no >checking if Fortran "byte" is C "long"... no >checking if Fortran "integer*2" is C "short"... yes >checking if Fortran "integer*2" is C "int"... no >checking if Fortran "integer*2" is C "long"... no >checking if Fortran "integer" is C "int"... yes >checking if Fortran "real" is C "float"... yes >checking if Fortran "doubleprecision" is C "double"... yes >checking for Fortran-equivalent to netCDF "byte"... byte >checking for Fortran-equivalent to netCDF "short"... integer*2 >checking if Fortran 90 compiler capitalizes .mod filenames... no >configure: checking types, headers, and functions >checking for stdlib.h... (cached) yes >checking for sys/types.h... (cached) yes >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for strlcat... no >checking for strerror... yes >checking for snprintf... yes >checking for working alloca.h... yes >checking for alloca... yes >checking whether isnan is declared... yes >checking whether isinf is declared... yes >checking whether isfinite is declared... yes >checking whether signbit is declared... yes >checking for struct stat.st_blksize... yes >checking for IEEE floating point format... yes >checking for size_t... yes >checking for off_t... yes >checking for ssize_t... yes >checking for ptrdiff_t... yes >checking for uchar... no >checking whether char is unsigned... no >checking whether byte ordering is bigendian... no >checking size of short... 2 >checking size of int... 4 >checking size of long... 8 >checking size of float... 4 >checking size of double... 8 >checking size of off_t... 8 >checking size of size_t... 8 >checking for manual-page index command... >checking what to call the output of the ftpbin target... binary-netcdf-4.0.1_nc3_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar x86_64-pc-linux-gnu-gfortran x86_64-pc-linux-gnu-c++ >checking binary distribution directory... /home/ftp/pub/binary/dummy_system >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking whether time.h and sys/time.h may both be included... yes >checking stdio.h usability... yes >checking stdio.h presence... yes >checking for stdio.h... yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking malloc.h usability... yes >checking malloc.h presence... yes >checking for malloc.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/stat.h... (cached) yes >checking for strchr... yes >checking for strrchr... yes >checking for mktemp... yes >checking for strcat... yes >checking for strcpy... yes >checking for vprintf... yes >checking for _doprnt... no >checking whether ncgen4 should be built... no >configure: generating header files and makefiles >configure: creating ./config.status >config.status: creating Makefile >chmod: cannot access `nc-config': No such file or directory >config.status: creating nc-config >config.status: creating netcdf.pc >config.status: creating man4/Makefile >config.status: creating fortran/Makefile >config.status: creating libsrc/Makefile >config.status: creating libsrc4/Makefile >config.status: creating nctest/Makefile >config.status: creating nc_test4/Makefile >config.status: creating nc_test/Makefile >config.status: creating ncdump/Makefile >config.status: creating ncgen/Makefile >config.status: creating nf_test/Makefile >config.status: creating cxx/Makefile >config.status: creating cxx4/Makefile >config.status: creating f90/Makefile >config.status: creating examples/Makefile >config.status: creating examples/C/Makefile >config.status: creating examples/CDL/Makefile >config.status: creating examples/CXX/Makefile >config.status: creating examples/CXX4/Makefile >config.status: creating examples/F90/Makefile >config.status: creating examples/F77/Makefile >config.status: creating win32/Makefile >config.status: creating win32/NET/Makefile >config.status: creating win32/NET/libsrc/Makefile >config.status: creating win32/NET/ncdump/Makefile >config.status: creating win32/NET/ncgen/Makefile >config.status: creating win32/NET/examples/Makefile >config.status: creating win32/NET/nctest/Makefile >config.status: creating win32/NET/nc_test/Makefile >config.status: creating libncdap3/Makefile >config.status: creating libncdap3/oc/Makefile >config.status: creating ncdap_test/Makefile >config.status: creating ncdap_test/expected3/Makefile >config.status: creating ncdap_test/testdata3/Makefile >config.status: creating ncgen4/Makefile >config.status: creating ncdump/cdl4/Makefile >config.status: creating ncdump/expected4/Makefile >config.status: creating config.h >config.status: creating fortran/nfconfig1.inc >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... >make -j6 >make all-recursive >make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' >Making all in libsrc >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc' >depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF $depbase.Tpo -c -o attr.lo attr.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF $depbase.Tpo -c -o ncx.lo ncx.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF $depbase.Tpo -c -o putget.lo putget.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF $depbase.Tpo -c -o dim.lo dim.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo error.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF $depbase.Tpo -c -o libvers.lo libvers.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -fPIC -DPIC -o .libs/ncx.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -fPIC -DPIC -o .libs/attr.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -fPIC -DPIC -o .libs/error.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -fPIC -DPIC -o .libs/putget.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -fPIC -DPIC -o .libs/libvers.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -fPIC -DPIC -o .libs/dim.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1 >depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF $depbase.Tpo -c -o nc.lo nc.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF $depbase.Tpo -c -o string.lo string.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -fPIC -DPIC -o .libs/nc.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -fPIC -DPIC -o .libs/string.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o >/dev/null 2>&1 >depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF $depbase.Tpo -c -o v1hpg.lo v1hpg.c &&\ > mv -f $depbase.Tpo $depbase.Plo >depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF $depbase.Tpo -c -o var.lo var.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -fPIC -DPIC -o .libs/v1hpg.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -fPIC -DPIC -o .libs/var.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o >/dev/null 2>&1 >depbase=`echo utf8proc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF $depbase.Tpo -c -o utf8proc.lo utf8proc.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o >/dev/null 2>&1 >depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF $depbase.Tpo -c -o posixio.lo posixio.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c -fPIC -DPIC -o .libs/utf8proc.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -fPIC -DPIC -o .libs/posixio.o >depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ > /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF $depbase.Tpo -c -o v2i.lo v2i.c &&\ > mv -f $depbase.Tpo $depbase.Plo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -fPIC -DPIC -o .libs/v2i.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb -Wl,-O1 -o libnetcdf2.la v2i.lo >libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf2.a .libs/v2i.o >libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf2.a >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c -o utf8proc.o >/dev/null 2>&1 >libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb -version-info 4:0:0 -Wl,-O1 -o libnetcdf.la -rpath /usr/lib64 attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo utf8proc.lo posixio.lo libnetcdf2.la >libtool: link: x86_64-pc-linux-gnu-gcc -shared .libs/attr.o .libs/ncx.o .libs/putget.o .libs/dim.o .libs/error.o .libs/libvers.o .libs/nc.o .libs/string.o .libs/v1hpg.o .libs/var.o .libs/utf8proc.o .libs/posixio.o -Wl,--whole-archive ./.libs/libnetcdf2.a -Wl,--no-whole-archive -march=nocona -Wl,-O1 -Wl,-soname -Wl,libnetcdf.so.4 -o .libs/libnetcdf.so.4.0.0 >libtool: link: (cd ".libs" && rm -f "libnetcdf.so.4" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so.4") >libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so") >libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && x86_64-pc-linux-gnu-ar x "/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc/./.libs/libnetcdf2.a") >libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o utf8proc.o posixio.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o >libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf.a >libtool: link: rm -fr .libs/libnetcdf.lax >libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" ) >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc' >Making all in f90 >make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' >x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o typeSizes.o typeSizes.f90 >make all-am >make[3]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' >/bin/sh ../libtool --mode=compile x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o typeSizes.lo typeSizes.f90 >/bin/sh ../libtool --mode=compile x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o netcdf.lo netcdf.f90 >x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o netcdf.o netcdf.f90 >libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -fPIC -o .libs/typeSizes.o >libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c netcdf.f90 -fPIC -o .libs/netcdf.o >libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -o typeSizes.o >/dev/null 2>&1 >Fatal Error: Can't delete temporary module file 'netcdf.mod0': No such file or directory >make[3]: *** [netcdf.o] Error 1 >make[3]: *** Waiting for unfinished jobs.... >libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c netcdf.f90 -o netcdf.o >/dev/null 2>&1 >make[3]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' >make[2]: *** [all] Error 2 >make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' >make[1]: *** [all-recursive] Error 1 >make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' >make: *** [all] Error 2 > [31;01m*[0m ERROR: sci-libs/netcdf-4.0.1 failed: > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 55: Called src_compile > [31;01m*[0m environment, line 2833: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die "emake failed" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-libs/netcdf-4.0.1', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-libs/netcdf-4.0.1'. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/netcdf-4.0.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/netcdf-4.0.1/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1'
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