* CPV: sci-libs/netcdf-4.0.1 * REPO: gentoo * USE: amd64 elibc_glibc fortran kernel_linux multilib userland_GNU >>> Unpacking source... >>> Unpacking netcdf-4.0.1.tar.gz to /var/tmp/portage/sci-libs/netcdf-4.0.1/work >>> Source unpacked in /var/tmp/portage/sci-libs/netcdf-4.0.1/work >>> Preparing source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... * Applying netcdf-4.0.1-as-needed.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' ... * Running aclocal -I m4 ...  [ ok ] * Running libtoolize --copy --force --install --automake ...  [ ok ] * Running aclocal -I m4 ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy --foreign ...  [ ok ] * Running elibtoolize in: netcdf-4.0.1 * Applying portage-2.2.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-2.2.6.patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... * econf: updating netcdf-4.0.1/config.guess with /usr/share/gnuconfig/config.guess * econf: updating netcdf-4.0.1/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --docdir=/usr/share/doc/netcdf-4.0.1 --enable-shared --enable-f77 --enable-f90 --enable-separate-fortran --disable-netcdf-4 --disable-ncgen4 --disable-docs-install configure: netCDF 4.0.1 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... no checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking whether this is a netCDF-4.x build... yes checking whether extra valgrind tests should be run... no configure: Processing NetCDF-4 options. checking whether netCDF-4 is to be built... no checking whether new netCDF-4 C++ API is to be built... no checking whether HDF5 should do data conversions... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a location for the HDF5 library was specified... checking whether a location for the ZLIB library was specified... checking whether a location for the SZLIB library was specified... checking whether a default cache size for HDF5 was specified... 32000000 checking whether a default cache maximum number of elements for HDF5 was specified... 1000 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether DAP client is to be built... no checking whether dap remote testing should be enabled... no checking whether netCDF extra tests should be run (developers only)... no checking whether documentation is to be installed... no checking whether Fortran compiler(s) should be tested during configure... yes checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes checking whether only the C library is desired... no checking whether examples should be built... yes checking whether F77 API is desired... yes checking whether F90 API is desired... yes checking whether fortran type sizes should be checked... yes checking whether C API is desired... yes checking where to get netCDF C-only library for separate fortran libraries... checking whether CXX API is desired... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking whether a win32 DLL is desired... no checking whether separate fortran libs are desired... yes configure: finding C compiler checking for x86_64-pc-linux-gnu-xlc... no checking for x86_64-pc-linux-gnu-cc... no checking for x86_64-pc-linux-gnu-c89... no checking for x86_64-pc-linux-gnu-acc... no checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-fort... no checking for x86_64-pc-linux-gnu-xlf95... no checking for x86_64-pc-linux-gnu-ifort... no checking for x86_64-pc-linux-gnu-ifc... no checking for x86_64-pc-linux-gnu-efc... no checking for x86_64-pc-linux-gnu-pgf95... no checking for x86_64-pc-linux-gnu-lf95... no checking for x86_64-pc-linux-gnu-g95... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-fort... no checking for x86_64-pc-linux-gnu-xlf95... no checking for x86_64-pc-linux-gnu-ifort... no checking for x86_64-pc-linux-gnu-ifc... no checking for x86_64-pc-linux-gnu-efc... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-lf95... no checking for x86_64-pc-linux-gnu-g95... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes configure: setting up Fortran 90 checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler can handle Fortran-90... yes configure: finding C++ compiler (will not be used if C++ API is not desired) checking for x86_64-pc-linux-gnu-cl... no checking for x86_64-pc-linux-gnu-KCC... no checking for x86_64-pc-linux-gnu-CC... no checking for x86_64-pc-linux-gnu-cxx... no checking for x86_64-pc-linux-gnu-cc++... no checking for x86_64-pc-linux-gnu-xlC... no checking for x86_64-pc-linux-gnu-aCC... no checking for x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-c++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-c++... gcc3 configure: setting up libtool checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether x86_64-pc-linux-gnu-c++ accepts -g... (cached) yes checking dependency style of x86_64-pc-linux-gnu-c++... (cached) gcc3 checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-c++ -E checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran compiler... (cached) yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by x86_64-pc-linux-gnu-c++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-c++ option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-c++ static flag -static works... yes checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities configure: trying to set fortran flags for this platform checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... checking CC CFLAGS... x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb checking type x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc is /usr/bin/x86_64-pc-linux-gnu-gcc checking CXX... x86_64-pc-linux-gnu-c++ checking CXXFLAGS... -march=nocona -O2 -pipe -ggdb checking type x86_64-pc-linux-gnu-c++... x86_64-pc-linux-gnu-c++ is /usr/bin/x86_64-pc-linux-gnu-c++ checking FC... x86_64-pc-linux-gnu-gfortran checking FFLAGS... -g -O2 checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran checking F90... x86_64-pc-linux-gnu-gfortran checking FCFLAGS... -g -O2 checking type x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran is /usr/bin/x86_64-pc-linux-gnu-gfortran checking AR... x86_64-pc-linux-gnu-ar checking AR_FLAGS... cru checking type x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar is /usr/bin/x86_64-pc-linux-gnu-ar checking NM... /usr/bin/nm -B checking NMFLAGS... checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... yes checking if Fortran "byte" is C "short"... no checking if Fortran "byte" is C "int"... no checking if Fortran "byte" is C "long"... no checking if Fortran "integer*2" is C "short"... yes checking if Fortran "integer*2" is C "int"... no checking if Fortran "integer*2" is C "long"... no checking if Fortran "integer" is C "int"... yes checking if Fortran "real" is C "float"... yes checking if Fortran "doubleprecision" is C "double"... yes checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking if Fortran 90 compiler capitalizes .mod filenames... no configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... no checking for strerror... yes checking for snprintf... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking for manual-page index command... checking what to call the output of the ftpbin target... binary-netcdf-4.0.1_nc3_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-gfortran_x86_64-pc-linux-gnu-c++.tar x86_64-pc-linux-gnu-gfortran x86_64-pc-linux-gnu-c++ checking binary distribution directory... /home/ftp/pub/binary/dummy_system checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking for strchr... yes checking for strrchr... yes checking for mktemp... yes checking for strcat... yes checking for strcpy... yes checking for vprintf... yes checking for _doprnt... no checking whether ncgen4 should be built... no configure: generating header files and makefiles configure: creating ./config.status config.status: creating Makefile chmod: cannot access `nc-config': No such file or directory config.status: creating nc-config config.status: creating netcdf.pc config.status: creating man4/Makefile config.status: creating fortran/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen/Makefile config.status: creating nf_test/Makefile config.status: creating cxx/Makefile config.status: creating cxx4/Makefile config.status: creating f90/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/CXX4/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating win32/Makefile config.status: creating win32/NET/Makefile config.status: creating win32/NET/libsrc/Makefile config.status: creating win32/NET/ncdump/Makefile config.status: creating win32/NET/ncgen/Makefile config.status: creating win32/NET/examples/Makefile config.status: creating win32/NET/nctest/Makefile config.status: creating win32/NET/nc_test/Makefile config.status: creating libncdap3/Makefile config.status: creating libncdap3/oc/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncgen4/Makefile config.status: creating ncdump/cdl4/Makefile config.status: creating ncdump/expected4/Makefile config.status: creating config.h config.status: creating fortran/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1 ... make -j6 make all-recursive make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' Making all in libsrc make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc' depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF $depbase.Tpo -c -o attr.lo attr.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF $depbase.Tpo -c -o ncx.lo ncx.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF $depbase.Tpo -c -o putget.lo putget.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF $depbase.Tpo -c -o dim.lo dim.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo error.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF $depbase.Tpo -c -o libvers.lo libvers.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -fPIC -DPIC -o .libs/ncx.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -fPIC -DPIC -o .libs/attr.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -fPIC -DPIC -o .libs/error.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -fPIC -DPIC -o .libs/putget.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -fPIC -DPIC -o .libs/libvers.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -fPIC -DPIC -o .libs/dim.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1 depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF $depbase.Tpo -c -o nc.lo nc.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF $depbase.Tpo -c -o string.lo string.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -fPIC -DPIC -o .libs/nc.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -fPIC -DPIC -o .libs/string.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o >/dev/null 2>&1 depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF $depbase.Tpo -c -o v1hpg.lo v1hpg.c &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF $depbase.Tpo -c -o var.lo var.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -fPIC -DPIC -o .libs/v1hpg.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -fPIC -DPIC -o .libs/var.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o >/dev/null 2>&1 depbase=`echo utf8proc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF $depbase.Tpo -c -o utf8proc.lo utf8proc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o >/dev/null 2>&1 depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF $depbase.Tpo -c -o posixio.lo posixio.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c -fPIC -DPIC -o .libs/utf8proc.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -fPIC -DPIC -o .libs/posixio.o depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF $depbase.Tpo -c -o v2i.lo v2i.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -fPIC -DPIC -o .libs/v2i.o libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o >/dev/null 2>&1 libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb -Wl,-O1 -o libnetcdf2.la v2i.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf2.a .libs/v2i.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf2.a libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c -o utf8proc.o >/dev/null 2>&1 libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../fortran -march=nocona -O2 -pipe -ggdb -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -march=nocona -O2 -pipe -ggdb -version-info 4:0:0 -Wl,-O1 -o libnetcdf.la -rpath /usr/lib64 attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo utf8proc.lo posixio.lo libnetcdf2.la libtool: link: x86_64-pc-linux-gnu-gcc -shared .libs/attr.o .libs/ncx.o .libs/putget.o .libs/dim.o .libs/error.o .libs/libvers.o .libs/nc.o .libs/string.o .libs/v1hpg.o .libs/var.o .libs/utf8proc.o .libs/posixio.o -Wl,--whole-archive ./.libs/libnetcdf2.a -Wl,--no-whole-archive -march=nocona -Wl,-O1 -Wl,-soname -Wl,libnetcdf.so.4 -o .libs/libnetcdf.so.4.0.0 libtool: link: (cd ".libs" && rm -f "libnetcdf.so.4" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so.4") libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.4.0.0" "libnetcdf.so") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && x86_64-pc-linux-gnu-ar x "/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc/./.libs/libnetcdf2.a") libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o utf8proc.o posixio.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnetcdf.a libtool: link: rm -fr .libs/libnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" ) make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/libsrc' Making all in f90 make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o typeSizes.o typeSizes.f90 make all-am make[3]: Entering directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' /bin/sh ../libtool --mode=compile x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o typeSizes.lo typeSizes.f90 /bin/sh ../libtool --mode=compile x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o netcdf.lo netcdf.f90 x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c -o netcdf.o netcdf.f90 libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -fPIC -o .libs/typeSizes.o libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c netcdf.f90 -fPIC -o .libs/netcdf.o libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -o typeSizes.o >/dev/null 2>&1 Fatal Error: Can't delete temporary module file 'netcdf.mod0': No such file or directory make[3]: *** [netcdf.o] Error 1 make[3]: *** Waiting for unfinished jobs.... libtool: compile: x86_64-pc-linux-gnu-gfortran -I../libsrc -I. -g -O2 -c netcdf.f90 -o netcdf.o >/dev/null 2>&1 make[3]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' make[2]: *** [all] Error 2 make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1/f90' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1' make: *** [all] Error 2 * ERROR: sci-libs/netcdf-4.0.1 failed: * emake failed * * Call stack: * ebuild.sh, line 55: Called src_compile * environment, line 2833: Called die * The specific snippet of code: * emake || die "emake failed" * * If you need support, post the output of 'emerge --info =sci-libs/netcdf-4.0.1', * the complete build log and the output of 'emerge -pqv =sci-libs/netcdf-4.0.1'. * The complete build log is located at '/var/tmp/portage/sci-libs/netcdf-4.0.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/netcdf-4.0.1/temp/environment'. * S: '/var/tmp/portage/sci-libs/netcdf-4.0.1/work/netcdf-4.0.1'