Build log

moldy-2.16e:20081122-210441.log (text/plain), 10.42 KB, created by Diego Elio Pettenò (RETIRED) on 2008-11-23 15:32:20 UTC

>>> Unpacking source...
>>> Unpacking moldy-2.16e.tar.gz to /var/tmp/portage/sci-chemistry/moldy-2.16e/work
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-chemistry/moldy-2.16e/work ...
creating cache ./config.cache
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking build system type... i686-pc-linux-gnu
checking for pgcc... no
checking for cc... cc
checking for c89... (cached) cc
checking for gcc... (cached) cc
checking whether the C compiler (cc -O2 -pipe -Wl,-O1) works... yes
checking whether the C compiler (cc -O2 -pipe -Wl,-O1) is a cross-compiler... no
checking whether we are using GNU C... yes
checking whether cc accepts -g... yes
checking for cpp... /lib/cpp
checking how to run the C preprocessor... cc -E
checking for a BSD compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for AIX... no
checking for library containing sin... -lm
checking for ANSI C header files... yes
checking for sys/param.h... yes
checking for sys/resource.h... yes
checking for sys/time.h... yes
checking for sys/times.h... yes
checking for sys/types.h... yes
checking for rpc/xdr.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for working const... yes
checking whether cc supports pointers to void... yes
checking whether cc supports stdarg.h with function prototypes... yes
checking size of float... 4
checking size of int... 4
checking for size_t... yes
checking for time_t... yes
checking for clock_t... no
checking return type of signal handlers... void
checking for strftime... yes
checking for vprintf... yes
checking for library containing xdr_int... none required
checking for gettimeofday... yes
checking for getrusage... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
checking for strchr... yes
checking for memcpy... yes
checking for memset... yes
checking for remove... yes
checking for strtol... yes
checking for popen... yes
checking for raise... yes
checking for times... yes
checking for getopt... yes
checking whether times returns the wall-clock time... no
updating cache ./config.cache
creating ./config.status
creating Makefile
creating config.h
make -j14
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c accel.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c algorith.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c alloc.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ansi.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -funroll-loops -c  auxil.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c beeman.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c convert.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c dump.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math  -c  ewald.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math   -c force.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c input.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c eigens.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math  -c kernel.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c main.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c matrix.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c output.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c quaterns.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c rdf.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c restart.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c startup.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c values.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c xdr.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c parallel.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc  -O2 -pipe -o moldyext -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  moldyext.c  -Wl,-O1 -lm 
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c utlsup.c
cc  -O2 -pipe  -o manalyze -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  manalyze.c -Wl,-O1 -lm 
cc  -O2 -pipe  -o bdist -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  bdist.c  -Wl,-O1 -lm 
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdshak.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ReadDCD.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c molout.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c msd.c
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdavpos.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdbond.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ransub.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc -DHAVE_CONFIG_H  -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdvaf.c
cc  -O2 -pipe -o dumpanal -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  dumpanal.c xdr.o  -Wl,-O1 -lm 
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc  -O2 -pipe -o dumpconv -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  dumpconv.c xdr.o -Wl,-O1 -lm 
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
cc  -O2 -pipe -o dumpext -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H  dumpext.c xdr.o utlsup.o matrix.o  -Wl,-O1 -lm 
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
dumpconv.c: In function 'read_binary':
dumpconv.c:204: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type
dumpconv.c: In function 'write_xdr':
dumpconv.c:229: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type
dumpext.c: In function 'extract':
dumpext.c:193: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type
cc -o moldy -Wl,-O1 accel.o algorith.o alloc.o ansi.o auxil.o beeman.o convert.o dump.o ewald.o force.o input.o eigens.o kernel.o main.o matrix.o output.o quaterns.o rdf.o restart.o startup.o values.o xdr.o parallel.o    -lm 
cc -o mdshak -Wl,-O1 mdshak.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -lm 
cc -o msd  msd.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -Wl,-O1 -lm 
cc -o mdavpos  mdavpos.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -Wl,-O1  -lm 
cc -o mdvaf  mdvaf.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -Wl,-O1 -lm 
cc -o ransub  ransub.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -Wl,-O1  -lm 
cc -o mdbond  mdbond.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o   -Wl,-O1  -lm 
TEXINPUTS=figures:: latex moldy
/bin/sh: latex: command not found
make: *** [moldy.aux] Error 127
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-chemistry/moldy-2.16e failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line  169:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       VARTEXFONTS="${T}"/fonts make moldy.pdf || die
 [31;01m*[0m  The die message:
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-chemistry/moldy-2.16e:20081122-210441.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/moldy-2.16e/temp/environment'.
 [31;01m*[0m