>>> Unpacking source... >>> Unpacking moldy-2.16e.tar.gz to /var/tmp/portage/sci-chemistry/moldy-2.16e/work >>> Source unpacked. >>> Compiling source in /var/tmp/portage/sci-chemistry/moldy-2.16e/work ... creating cache ./config.cache checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking build system type... i686-pc-linux-gnu checking for pgcc... no checking for cc... cc checking for c89... (cached) cc checking for gcc... (cached) cc checking whether the C compiler (cc -O2 -pipe -Wl,-O1) works... yes checking whether the C compiler (cc -O2 -pipe -Wl,-O1) is a cross-compiler... no checking whether we are using GNU C... yes checking whether cc accepts -g... yes checking for cpp... /lib/cpp checking how to run the C preprocessor... cc -E checking for a BSD compatible install... /usr/bin/install -c checking whether ln -s works... yes checking for AIX... no checking for library containing sin... -lm checking for ANSI C header files... yes checking for sys/param.h... yes checking for sys/resource.h... yes checking for sys/time.h... yes checking for sys/times.h... yes checking for sys/types.h... yes checking for rpc/xdr.h... yes checking whether time.h and sys/time.h may both be included... yes checking for working const... yes checking whether cc supports pointers to void... yes checking whether cc supports stdarg.h with function prototypes... yes checking size of float... 4 checking size of int... 4 checking for size_t... yes checking for time_t... yes checking for clock_t... no checking return type of signal handlers... void checking for strftime... yes checking for vprintf... yes checking for library containing xdr_int... none required checking for gettimeofday... yes checking for getrusage... yes checking for strdup... yes checking for strerror... yes checking for strstr... yes checking for strchr... yes checking for memcpy... yes checking for memset... yes checking for remove... yes checking for strtol... yes checking for popen... yes checking for raise... yes checking for times... yes checking for getopt... yes checking whether times returns the wall-clock time... no updating cache ./config.cache creating ./config.status creating Makefile creating config.h make -j14 cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c accel.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c algorith.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c alloc.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ansi.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -funroll-loops -c auxil.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c beeman.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c convert.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c dump.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ewald.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c force.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c input.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c eigens.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c kernel.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c main.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c matrix.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c output.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c quaterns.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c rdf.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c restart.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c startup.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c values.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c xdr.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c parallel.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -O2 -pipe -o moldyext -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H moldyext.c -Wl,-O1 -lm `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c utlsup.c cc -O2 -pipe -o manalyze -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H manalyze.c -Wl,-O1 -lm cc -O2 -pipe -o bdist -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H bdist.c -Wl,-O1 -lm `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdshak.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ReadDCD.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c molout.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c msd.c cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdavpos.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdbond.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c ransub.c `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -DHAVE_CONFIG_H -O2 -pipe -O2 -mcpu=pentium -malign-double -ffast-math -c mdvaf.c cc -O2 -pipe -o dumpanal -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H dumpanal.c xdr.o -Wl,-O1 -lm `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -O2 -pipe -o dumpconv -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H dumpconv.c xdr.o -Wl,-O1 -lm `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. cc -O2 -pipe -o dumpext -O2 -mcpu=pentium -malign-double -ffast-math -DHAVE_CONFIG_H dumpext.c xdr.o utlsup.o matrix.o -Wl,-O1 -lm `-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead. dumpconv.c: In function 'read_binary': dumpconv.c:204: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type dumpconv.c: In function 'write_xdr': dumpconv.c:229: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type dumpext.c: In function 'extract': dumpext.c:193: warning: passing argument 5 of 'xdr_vector' from incompatible pointer type cc -o moldy -Wl,-O1 accel.o algorith.o alloc.o ansi.o auxil.o beeman.o convert.o dump.o ewald.o force.o input.o eigens.o kernel.o main.o matrix.o output.o quaterns.o rdf.o restart.o startup.o values.o xdr.o parallel.o -lm cc -o mdshak -Wl,-O1 mdshak.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -lm cc -o msd msd.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -Wl,-O1 -lm cc -o mdavpos mdavpos.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -Wl,-O1 -lm cc -o mdvaf mdvaf.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -Wl,-O1 -lm cc -o ransub ransub.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -Wl,-O1 -lm cc -o mdbond mdbond.o algorith.o alloc.o auxil.o ansi.o convert.o eigens.o kernel.o input.o matrix.o quaterns.o restart.o startup.o values.o xdr.o ReadDCD.o utlsup.o molout.o -Wl,-O1 -lm TEXINPUTS=figures:: latex moldy /bin/sh: latex: command not found make: *** [moldy.aux] Error 127 * * ERROR: sci-chemistry/moldy-2.16e failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 169: Called die * The specific snippet of code: * VARTEXFONTS="${T}"/fonts make moldy.pdf || die * The die message: * (no error message) * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-chemistry/moldy-2.16e:20081122-210441.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/moldy-2.16e/temp/environment'. *