Build log

wise-2.2.0:20081122-193725.log (text/plain), 17.54 KB, created by Diego Elio Pettenò (RETIRED) on 2008-11-23 15:26:10 UTC

>>> Unpacking source...
>>> Unpacking wise2.2.0.tar.gz to /var/tmp/portage/sci-biology/wise-2.2.0/work
 [32;01m*[0m Applying wise-api.tex.patch ...
[A[72C  [34;01m[ [32;01mok[34;01m ][0m
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0 ...
(cd base   ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libwisebase.a )
make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/base'
i686-pc-linux-gnu-gcc -c -O2 -pipe  wiseconfig.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wisestring.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wiseerror.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wisememman.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wisefile.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wiserandom.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wisetime.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  wiseoverlay.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  commandline.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  linesubs.c
ar ru libwisebase.a wiseconfig.o wisestring.o wiseerror.o wisememman.o wisefile.o wiserandom.o wisetime.o wiseoverlay.o commandline.o linesubs.o
ar: creating libwisebase.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/base'
(cd HMMer2 ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libhmmer.a )
make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/HMMer2'
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c alphabet.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c core_algorithms.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c debug.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c emit.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c emulation.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c histogram.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c hmmio.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c mathsupport.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c masks.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c misc.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c modelmakers.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c plan7.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c plan9.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c prior.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c tophits.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c trace.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c aligneval.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c alignio.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c cluster.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c dayhoff.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c file.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c getopt.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c gnuregex.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c interleaved.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c iupac.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c msf.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c revcomp.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c selex.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c sqerror.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c sqio.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c sre_ctype.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c sre_math.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c sre_string.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c stack.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c translate.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c types.c		
i686-pc-linux-gnu-gcc -c -O2 -pipe   -c weight.c		
ar rcv  libhmmer.a alphabet.o    core_algorithms.o debug.o	          emit.o emulation.o   histogram.o       hmmio.o           mathsupport.o masks.o       misc.o            modelmakers.o     plan7.o plan9.o       prior.o           tophits.o         trace.o aligneval.o   alignio.o         cluster.o         dayhoff.o file.o        getopt.o          gnuregex.o        interleaved.o iupac.o       msf.o             revcomp.o         selex.o sqerror.o     sqio.o            sre_ctype.o       sre_math.o sre_string.o  stack.o           translate.o       types.o weight.o
a - alphabet.o
a - core_algorithms.o
a - debug.o
a - emit.o
a - emulation.o
a - histogram.o
a - hmmio.o
a - mathsupport.o
a - masks.o
a - misc.o
a - modelmakers.o
a - plan7.o
a - plan9.o
a - prior.o
a - tophits.o
a - trace.o
a - aligneval.o
a - alignio.o
a - cluster.o
a - dayhoff.o
a - file.o
a - getopt.o
a - gnuregex.o
a - interleaved.o
a - iupac.o
a - msf.o
a - revcomp.o
a - selex.o
a - sqerror.o
a - sqio.o
a - sre_ctype.o
a - sre_math.o
a - sre_string.o
a - stack.o
a - translate.o
a - types.o
a - weight.o
if test -x /bin/ranlib; then /bin/ranlib libhmmer.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libhmmer.a; else exit 0; fi
if test -x ranlib; then ranlib libhmmer.a; else exit 0; fi
chmod 644 libhmmer.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/HMMer2'
(cd dynlibsrc ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libdyna.a )
make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/dynlibsrc'
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ packaln.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ aln.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dnamatrix.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ probability.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ alnrange.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ alnconvert.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ basematrix.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ matrixdebug.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dpenvelope.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dbsearchimpl.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dprunimpl.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ complexsequence.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ complexevalset.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ complexconsensi.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ sequence.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ seqalign.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ codon.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ compmat.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ codonmatrix.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ codonmapper.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ sequencedb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ hscore.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ histogram.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ proteindb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ protein.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ genomicdb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ randommodel.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ randomdb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ genomic.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ cdna.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ cdnadb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dna.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ embl.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ genomicregion.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ gene.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ transcript.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ translation.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ btcanvas.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ asciibtcanvas.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ dynlibcross.c
ar ru libdyna.a packaln.o aln.o dnamatrix.o probability.o alnrange.o alnconvert.o basematrix.o matrixdebug.o dpenvelope.o dbsearchimpl.o dprunimpl.o complexsequence.o complexevalset.o complexconsensi.o sequence.o seqalign.o codon.o compmat.o codonmatrix.o codonmapper.o sequencedb.o hscore.o histogram.o proteindb.o protein.o genomicdb.o randommodel.o randomdb.o genomic.o cdna.o cdnadb.o dna.o embl.o genomicregion.o gene.o transcript.o translation.o btcanvas.o asciibtcanvas.o dynlibcross.o
ar: creating libdyna.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/dynlibsrc'
(cd models  ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " EXTRALIBS="" HMMER_DEFINE="HMMER_INTERNAL" HMMER_INCLUDE="../HMMer2/" HMMER_LIBS="../HMMer2/" all )	
make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/models'
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ dnal.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ dnaalign.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ seqaligndisplay.c
i686-pc-linux-gnu-gcc -o dnal dnal.o dnaalign.o seqaligndisplay.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ psw.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ proteinsw.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ sw_wrap.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ abc.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ pba.c
i686-pc-linux-gnu-gcc -o psw psw.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o   -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ pswdb.c
i686-pc-linux-gnu-gcc -o pswdb pswdb.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ dbac.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ dba.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ dbadisplay.c
i686-pc-linux-gnu-gcc -o dba dbac.o dba.o dbadisplay.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  estwise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I.
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneparser21.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneparameter.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genestats.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneutil.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ threestatemodel.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genefrequency.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ splicesitemodeler.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genewise4.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genewise6.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genewise21.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneloop21.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneloop6.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ gwlite.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ gwlitemodel.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ gwrap.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ matchsum.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estwrap.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genewisemodel.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ cdparser.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genedisplay.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estwise3.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estslim3.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estloop3.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estfrag3.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estslimloop.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ gwquickdb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ threestatedb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ pfamhmmer1db.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ pwmdna.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../HMMer2/ -DHMMER_INTERNAL -I../base/ -I../dynlibsrc/ wise2xhmmer2.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genewisemodeldb.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ seqhit.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ geneparser4.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ estquick3.c
i686-pc-linux-gnu-gcc -g -o estwise estwise.o  geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o  -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  genewise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I.
i686-pc-linux-gnu-gcc -g -o genewise genewise.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o  -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  genewisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ 
i686-pc-linux-gnu-gcc -g -o genewisedb genewisedb.o  geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o   -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm  
i686-pc-linux-gnu-gcc -c -O2 -pipe  estwisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/
i686-pc-linux-gnu-gcc -g -o estwisedb estwisedb.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o   -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm 
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genomewise.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genomewise9.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ genome_evidence.c
i686-pc-linux-gnu-gcc -c -O2 -pipe  -I../base/ -I../dynlibsrc/ est_evidence.c
est_evidence.dy: In function 'Wise2_new_est_GenomeEvidenceUnit':
est_evidence.dy:136: warning: assignment from incompatible pointer type
i686-pc-linux-gnu-gcc -g -o genomewise genomewise.o genomewise9.o genome_evidence.o est_evidence.o geneutil.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm 
ar ru libmodel.a geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o 
ar: creating libmodel.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/models'
make bin
make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src'
mkdir bin
mv models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/genomewise ./bin
csh welcome.csh

Welcome to Wise2.0

The executable programs are in the ./bin directory

You must set your WISECONFIGDIR to the config directory
before using the programs

ie, type setenv WISECONFIGDIR /var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/wisecfg/

to try an example, try cd example and then
../bin/genewise road.pep human.genomic

to build perl, type make perl and follow the instructions

to test the package, type make test
make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src'
/var/tmp/portage/sci-biology/wise-2.2.0/temp/environment: line 2131: latex: command not found
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-biology/wise-2.2.0 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line 2131:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m           latex ${i} || die;
 [31;01m*[0m  The die message:
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-biology/wise-2.2.0:20081122-193725.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/wise-2.2.0/temp/environment'.
 [31;01m*[0m