>>> Unpacking source... >>> Unpacking wise2.2.0.tar.gz to /var/tmp/portage/sci-biology/wise-2.2.0/work * Applying wise-api.tex.patch ...  [ ok ] >>> Source unpacked. >>> Compiling source in /var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0 ... (cd base ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libwisebase.a ) make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/base' i686-pc-linux-gnu-gcc -c -O2 -pipe wiseconfig.c i686-pc-linux-gnu-gcc -c -O2 -pipe wisestring.c i686-pc-linux-gnu-gcc -c -O2 -pipe wiseerror.c i686-pc-linux-gnu-gcc -c -O2 -pipe wisememman.c i686-pc-linux-gnu-gcc -c -O2 -pipe wisefile.c i686-pc-linux-gnu-gcc -c -O2 -pipe wiserandom.c i686-pc-linux-gnu-gcc -c -O2 -pipe wisetime.c i686-pc-linux-gnu-gcc -c -O2 -pipe wiseoverlay.c i686-pc-linux-gnu-gcc -c -O2 -pipe commandline.c i686-pc-linux-gnu-gcc -c -O2 -pipe linesubs.c ar ru libwisebase.a wiseconfig.o wisestring.o wiseerror.o wisememman.o wisefile.o wiserandom.o wisetime.o wiseoverlay.o commandline.o linesubs.o ar: creating libwisebase.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/base' (cd HMMer2 ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libhmmer.a ) make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/HMMer2' i686-pc-linux-gnu-gcc -c -O2 -pipe -c alphabet.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c core_algorithms.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c debug.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c emit.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c emulation.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c histogram.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c hmmio.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c mathsupport.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c masks.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c misc.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c modelmakers.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c plan7.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c plan9.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c prior.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c tophits.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c trace.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c aligneval.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c alignio.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c cluster.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c dayhoff.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c file.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c getopt.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c gnuregex.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c interleaved.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c iupac.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c msf.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c revcomp.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c selex.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c sqerror.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c sqio.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c sre_ctype.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c sre_math.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c sre_string.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c stack.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c translate.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c types.c i686-pc-linux-gnu-gcc -c -O2 -pipe -c weight.c ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o emit.o emulation.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o prior.o tophits.o trace.o aligneval.o alignio.o cluster.o dayhoff.o file.o getopt.o gnuregex.o interleaved.o iupac.o msf.o revcomp.o selex.o sqerror.o sqio.o sre_ctype.o sre_math.o sre_string.o stack.o translate.o types.o weight.o a - alphabet.o a - core_algorithms.o a - debug.o a - emit.o a - emulation.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - prior.o a - tophits.o a - trace.o a - aligneval.o a - alignio.o a - cluster.o a - dayhoff.o a - file.o a - getopt.o a - gnuregex.o a - interleaved.o a - iupac.o a - msf.o a - revcomp.o a - selex.o a - sqerror.o a - sqio.o a - sre_ctype.o a - sre_math.o a - sre_string.o a - stack.o a - translate.o a - types.o a - weight.o if test -x /bin/ranlib; then /bin/ranlib libhmmer.a; else exit 0; fi if test -x /usr/bin/ranlib; then /usr/bin/ranlib libhmmer.a; else exit 0; fi if test -x ranlib; then ranlib libhmmer.a; else exit 0; fi chmod 644 libhmmer.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/HMMer2' (cd dynlibsrc ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " libdyna.a ) make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/dynlibsrc' i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ packaln.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ aln.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dnamatrix.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ probability.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ alnrange.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ alnconvert.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ basematrix.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ matrixdebug.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dpenvelope.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dbsearchimpl.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dprunimpl.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ complexsequence.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ complexevalset.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ complexconsensi.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ sequence.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ seqalign.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ codon.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ compmat.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ codonmatrix.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ codonmapper.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ sequencedb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ hscore.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ histogram.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ proteindb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ protein.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ genomicdb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ randommodel.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ randomdb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ genomic.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ cdna.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ cdnadb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dna.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ embl.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ genomicregion.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ gene.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ transcript.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ translation.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ btcanvas.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ asciibtcanvas.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ dynlibcross.c ar ru libdyna.a packaln.o aln.o dnamatrix.o probability.o alnrange.o alnconvert.o basematrix.o matrixdebug.o dpenvelope.o dbsearchimpl.o dprunimpl.o complexsequence.o complexevalset.o complexconsensi.o sequence.o seqalign.o codon.o compmat.o codonmatrix.o codonmapper.o sequencedb.o hscore.o histogram.o proteindb.o protein.o genomicdb.o randommodel.o randomdb.o genomic.o cdna.o cdnadb.o dna.o embl.o genomicregion.o gene.o transcript.o translation.o btcanvas.o asciibtcanvas.o dynlibcross.o ar: creating libdyna.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/dynlibsrc' (cd models ; make CC="i686-pc-linux-gnu-gcc" CFLAGS="-c -O2 -pipe " EXTRALIBS="" HMMER_DEFINE="HMMER_INTERNAL" HMMER_INCLUDE="../HMMer2/" HMMER_LIBS="../HMMer2/" all ) make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/models' i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ dnal.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ dnaalign.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ seqaligndisplay.c i686-pc-linux-gnu-gcc -o dnal dnal.o dnaalign.o seqaligndisplay.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ psw.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ proteinsw.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ sw_wrap.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ abc.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ pba.c i686-pc-linux-gnu-gcc -o psw psw.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ pswdb.c i686-pc-linux-gnu-gcc -o pswdb pswdb.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ dbac.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ dba.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ dbadisplay.c i686-pc-linux-gnu-gcc -o dba dbac.o dba.o dbadisplay.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe estwise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I. i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneparser21.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneparameter.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genestats.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneutil.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ threestatemodel.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genefrequency.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ splicesitemodeler.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genewise4.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genewise6.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genewise21.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneloop21.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneloop6.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ gwlite.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ gwlitemodel.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ gwrap.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ matchsum.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estwrap.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genewisemodel.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ cdparser.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genedisplay.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estwise3.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estslim3.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estloop3.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estfrag3.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estslimloop.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ gwquickdb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ threestatedb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ pfamhmmer1db.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ pwmdna.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../HMMer2/ -DHMMER_INTERNAL -I../base/ -I../dynlibsrc/ wise2xhmmer2.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genewisemodeldb.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ seqhit.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ geneparser4.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ estquick3.c i686-pc-linux-gnu-gcc -g -o estwise estwise.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe genewise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I. i686-pc-linux-gnu-gcc -g -o genewise genewise.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe genewisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ i686-pc-linux-gnu-gcc -g -o genewisedb genewisedb.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe estwisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ i686-pc-linux-gnu-gcc -g -o estwisedb estwisedb.o geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lhmmer -ldyna -lwisebase -lm i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genomewise.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genomewise9.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ genome_evidence.c i686-pc-linux-gnu-gcc -c -O2 -pipe -I../base/ -I../dynlibsrc/ est_evidence.c est_evidence.dy: In function 'Wise2_new_est_GenomeEvidenceUnit': est_evidence.dy:136: warning: assignment from incompatible pointer type i686-pc-linux-gnu-gcc -g -o genomewise genomewise.o genomewise9.o genome_evidence.o est_evidence.o geneutil.o -g -L../base/ -L../dynlibsrc/ -L../HMMer2/ -ldyna -lwisebase -lm ar ru libmodel.a geneparser21.o geneparameter.o genestats.o geneutil.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genewise21.o geneloop21.o geneloop6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o ar: creating libmodel.a make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/models' make bin make[1]: Entering directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src' mkdir bin mv models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/genomewise ./bin csh welcome.csh Welcome to Wise2.0 The executable programs are in the ./bin directory You must set your WISECONFIGDIR to the config directory before using the programs ie, type setenv WISECONFIGDIR /var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src/wisecfg/ to try an example, try cd example and then ../bin/genewise road.pep human.genomic to build perl, type make perl and follow the instructions to test the package, type make test make[1]: Leaving directory `/var/tmp/portage/sci-biology/wise-2.2.0/work/wise2.2.0/src' /var/tmp/portage/sci-biology/wise-2.2.0/temp/environment: line 2131: latex: command not found * * ERROR: sci-biology/wise-2.2.0 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 2131: Called die * The specific snippet of code: * latex ${i} || die; * The die message: * (no error message) * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-biology/wise-2.2.0:20081122-193725.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/wise-2.2.0/temp/environment'. *