emerge build.log

build.log (text/plain), 14.09 KB, created by Reinis Danne on 2008-08-21 13:31:52 UTC

>>> Unpacking source...
>>> Unpacking ghemical-2.95.tar.gz to /var/tmp/portage/sci-chemistry/ghemical-2.95/work
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-chemistry/ghemical-2.95/work/ghemical-2.95 ...
 * econf: updating ghemical-2.95/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating ghemical-2.95/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-openbabel --enable-threads --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
checking for x86_64-pc-linux-gnu-fort77... no
checking for x86_64-pc-linux-gnu-fl32... no
checking for x86_64-pc-linux-gnu-af77... no
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-f90... no
checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ar... /usr/bin/ar
checking for sh... /bin/sh
checking whether make sets $(MAKE)... (cached) yes
checking whether build environment is sane... yes
checking for acos in -lm... yes
checking for glRenderMode in -lGL... yes
checking for gluCylinder in -lGLU... yes
checking for glutInit in -lglut... yes
checking for XOpenDisplay in -lX11... yes
checking for XmuDrawLogo in -lXmu... yes
checking for XShmAttach in -lXext... yes
checking for XOpenDevice in -lXi... yes
checking for x86_64-pc-linux-gnu-pkg-config... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GTHREAD... yes
checking for GTK... yes
checking for GTKGLEXT... yes
checking for LIBGLADE... yes
checking for OPENBABEL... yes
checking for LIBGHEMICAL... yes
checking for LIBOGLAPPTH... yes
checking GL/glut.h usability... yes
checking GL/glut.h presence... yes
checking for GL/glut.h... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... -std=gnu99
checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for ANSI C header files... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating docs/Makefile
config.status: creating docs/user-docs/Makefile
config.status: creating docs/user-docs/images/Makefile
config.status: creating examples/Makefile
config.status: creating examples/TSS/Makefile
config.status: creating examples/TSS/carbocation_rearrangement_hydride_shift/Makefile
config.status: creating examples/TSS/carbocation_rearrangement_methide_shift/Makefile
config.status: creating examples/TSS/cycloaddition_Diels-Alder/Makefile
config.status: creating examples/TSS/E2-reaction/Makefile
config.status: creating examples/TSS/sigmatropic_rearrangement_Cope/Makefile
config.status: creating examples/TSS/SN2-reaction/Makefile
config.status: creating examples/TSS/tautomeric_shift_keto_enol/Makefile
config.status: creating src/Makefile
config.status: creating src/res_gtk/Makefile
config.status: creating src/ghemicalconfig.h
config.status: executing src/ghemicalconfig2.h commands
config.status: executing depfiles commands

build options:
^^^^^^^^^^^^^^
enable gtk : yes
enable threads : yes
enable OpenBabel : yes

Making all in docs
Making all in user-docs
Making all in images
Making all in examples
Making all in TSS
Making all in carbocation_rearrangement_hydride_shift
Making all in carbocation_rearrangement_methide_shift
Making all in cycloaddition_Diels-Alder
Making all in E2-reaction
Making all in sigmatropic_rearrangement_Cope
Making all in SN2-reaction
Making all in tautomeric_shift_keto_enol
Making all in src
Making all in res_gtk
mkdir .libs
x86_64-pc-linux-gnu-g++ -march=nocona -O2 -pipe -Wl,-O1 -o ghemical fileio.o filetrans.o custom_app.o custom_camera.o custom_lights.o project.o spline.o oglview_wcl.o ac_stor_wcl.o p1dview_wcl.o p2dview_wcl.o eldview_wcl.o rcpview_wcl.o gpcview_wcl.o ogl_plane.o ogl_surface.o ogl_ribbon.o gtk_simple_dialogs.o gtk_glade_dialog.o gtk_file_export_dialog.o gtk_file_import_dialog.o gtk_geomopt_dialog.o gtk_moldyn_dialog.o gtk_progress_dialog.o gtk_setup_dialog.o gtk_stereo_dialog.o gtk_trajview_dialog.o gtk_wnd.o gtk_oglview_wnd.o gtk_p1dview_wnd.o gtk_p2dview_wnd.o gtk_eldview_wnd.o gtk_rcpview_wnd.o gtk_gpcview_wnd.o gtk_app.o gtk_project.o gtk_main.o -pthread -Wl,--export-dynamic  /usr/lib64/libXi.so /usr/lib64/libXext.so /usr/lib64/libglut.so -lm -L/usr/X11R6/lib /usr/lib64/libgthread-2.0.so -lrt /usr/lib64/libgtkglext-x11-1.0.so /usr/lib64/libgdkglext-x11-1.0.so /usr/lib/libGLU.so /usr/lib64/libGL.so /usr/lib64/libXmu.so /usr/lib64/libXt.so /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libpangox-1.0.so /usr/lib64/libX11.so /usr/lib64/libglade-2.0.so /usr/lib64/libgtk-x11-2.0.so /usr/lib64/libxml2.so /usr/lib64/libgdk-x11-2.0.so /usr/lib64/libatk-1.0.so /usr/lib64/libgdk_pixbuf-2.0.so /usr/lib64/libpangocairo-1.0.so /usr/lib64/libpango-1.0.so /usr/lib64/libcairo.so /usr/lib64/libgobject-2.0.so /usr/lib64/libgmodule-2.0.so -ldl /usr/lib64/libglib-2.0.so /usr/lib64/libopenbabel.so -L/usr/lib /usr/lib64/libghemical.so /usr/lib64/libmopac7.so /usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so /usr/lib64/liboglappth.so
/usr/lib64/libmopac7.so: undefined reference to `c_abs'
/usr/lib64/libmopac7.so: undefined reference to `e_wsue'
/usr/lib64/libmopac7.so: undefined reference to `do_lio'
/usr/lib64/libmopac7.so: undefined reference to `flush_'
/usr/lib64/libmopac7.so: undefined reference to `z_sqrt'
/usr/lib64/libmopac7.so: undefined reference to `e_rsle'
/usr/lib64/libmopac7.so: undefined reference to `e_wsfe'
/usr/lib64/libmopac7.so: undefined reference to `i_len'
/usr/lib64/libmopac7.so: undefined reference to `getenv_'
/usr/lib64/libmopac7.so: undefined reference to `s_wsue'
/usr/lib64/libmopac7.so: undefined reference to `d_int'
/usr/lib64/libmopac7.so: undefined reference to `s_wdue'
/usr/lib64/libmopac7.so: undefined reference to `pow_dd'
/usr/lib64/libmopac7.so: undefined reference to `i_indx'
/usr/lib64/libmopac7.so: undefined reference to `d_sign'
/usr/lib64/libmopac7.so: undefined reference to `e_rsue'
/usr/lib64/libmopac7.so: undefined reference to `e_wdue'
/usr/lib64/libmopac7.so: undefined reference to `s_stop'
/usr/lib64/libmopac7.so: undefined reference to `s_rsue'
/usr/lib64/libmopac7.so: undefined reference to `pow_ii'
/usr/lib64/libmopac7.so: undefined reference to `r_sign'
/usr/lib64/libmopac7.so: undefined reference to `d_nint'
/usr/lib64/libmopac7.so: undefined reference to `e_rsfe'
/usr/lib64/libmopac7.so: undefined reference to `s_wsle'
/usr/lib64/libmopac7.so: undefined reference to `do_uio'
/usr/lib64/libmopac7.so: undefined reference to `e_rdue'
/usr/lib64/libmopac7.so: undefined reference to `s_cmp'
/usr/lib64/libmopac7.so: undefined reference to `d_lg10'
/usr/lib64/libmopac7.so: undefined reference to `s_rdue'
/usr/lib64/libmopac7.so: undefined reference to `f_rew'
/usr/lib64/libmopac7.so: undefined reference to `r_cnjg'
/usr/lib64/libmopac7.so: undefined reference to `s_copy'
/usr/lib64/libmopac7.so: undefined reference to `s_cat'
/usr/lib64/libmopac7.so: undefined reference to `s_rsfe'
/usr/lib64/libmopac7.so: undefined reference to `e_wsle'
/usr/lib64/libmopac7.so: undefined reference to `f_clos'
/usr/lib64/libmopac7.so: undefined reference to `s_rsle'
/usr/lib64/libmopac7.so: undefined reference to `do_fio'
/usr/lib64/libmopac7.so: undefined reference to `i_dnnt'
/usr/lib64/libmopac7.so: undefined reference to `s_wsfe'
/usr/lib64/libmopac7.so: undefined reference to `pow_di'
/usr/lib64/libmopac7.so: undefined reference to `z_exp'
/usr/lib64/libmopac7.so: undefined reference to `f_open'
collect2: ld returned 1 exit status
make[3]: *** [ghemical] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-chemistry/ghemical-2.95 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line   49:  Called src_compile
 [31;01m*[0m             environment, line 2430:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake || die "make failed"
 [31;01m*[0m  The die message:
 [31;01m*[0m   make failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/tmp/portage/sci-chemistry/ghemical-2.95/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/ghemical-2.95/temp/environment'.
 [31;01m*[0m