>>> Unpacking source... >>> Unpacking ghemical-2.95.tar.gz to /var/tmp/portage/sci-chemistry/ghemical-2.95/work >>> Source unpacked. >>> Compiling source in /var/tmp/portage/sci-chemistry/ghemical-2.95/work/ghemical-2.95 ... * econf: updating ghemical-2.95/config.sub with /usr/share/gnuconfig/config.sub * econf: updating ghemical-2.95/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-openbabel --enable-threads --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for a BSD-compatible install... /usr/bin/install -c checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for x86_64-pc-linux-gnu-g77... no checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-f77... no checking for x86_64-pc-linux-gnu-frt... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-cf77... no checking for x86_64-pc-linux-gnu-fort77... no checking for x86_64-pc-linux-gnu-fl32... no checking for x86_64-pc-linux-gnu-af77... no checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-f90... no checking for x86_64-pc-linux-gnu-pgf90... no checking for x86_64-pc-linux-gnu-pghpf... no checking for x86_64-pc-linux-gnu-epcf90... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok checking for objdir... .libs checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar checking for sh... /bin/sh checking whether make sets $(MAKE)... (cached) yes checking whether build environment is sane... yes checking for acos in -lm... yes checking for glRenderMode in -lGL... yes checking for gluCylinder in -lGLU... yes checking for glutInit in -lglut... yes checking for XOpenDisplay in -lX11... yes checking for XmuDrawLogo in -lXmu... yes checking for XShmAttach in -lXext... yes checking for XOpenDevice in -lXi... yes checking for x86_64-pc-linux-gnu-pkg-config... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTHREAD... yes checking for GTK... yes checking for GTKGLEXT... yes checking for LIBGLADE... yes checking for OPENBABEL... yes checking for LIBGHEMICAL... yes checking for LIBOGLAPPTH... yes checking GL/glut.h usability... yes checking GL/glut.h presence... yes checking for GL/glut.h... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... -std=gnu99 checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating docs/Makefile config.status: creating docs/user-docs/Makefile config.status: creating docs/user-docs/images/Makefile config.status: creating examples/Makefile config.status: creating examples/TSS/Makefile config.status: creating examples/TSS/carbocation_rearrangement_hydride_shift/Makefile config.status: creating examples/TSS/carbocation_rearrangement_methide_shift/Makefile config.status: creating examples/TSS/cycloaddition_Diels-Alder/Makefile config.status: creating examples/TSS/E2-reaction/Makefile config.status: creating examples/TSS/sigmatropic_rearrangement_Cope/Makefile config.status: creating examples/TSS/SN2-reaction/Makefile config.status: creating examples/TSS/tautomeric_shift_keto_enol/Makefile config.status: creating src/Makefile config.status: creating src/res_gtk/Makefile config.status: creating src/ghemicalconfig.h config.status: executing src/ghemicalconfig2.h commands config.status: executing depfiles commands build options: ^^^^^^^^^^^^^^ enable gtk : yes enable threads : yes enable OpenBabel : yes Making all in docs Making all in user-docs Making all in images Making all in examples Making all in TSS Making all in carbocation_rearrangement_hydride_shift Making all in carbocation_rearrangement_methide_shift Making all in cycloaddition_Diels-Alder Making all in E2-reaction Making all in sigmatropic_rearrangement_Cope Making all in SN2-reaction Making all in tautomeric_shift_keto_enol Making all in src Making all in res_gtk mkdir .libs x86_64-pc-linux-gnu-g++ -march=nocona -O2 -pipe -Wl,-O1 -o ghemical fileio.o filetrans.o custom_app.o custom_camera.o custom_lights.o project.o spline.o oglview_wcl.o ac_stor_wcl.o p1dview_wcl.o p2dview_wcl.o eldview_wcl.o rcpview_wcl.o gpcview_wcl.o ogl_plane.o ogl_surface.o ogl_ribbon.o gtk_simple_dialogs.o gtk_glade_dialog.o gtk_file_export_dialog.o gtk_file_import_dialog.o gtk_geomopt_dialog.o gtk_moldyn_dialog.o gtk_progress_dialog.o gtk_setup_dialog.o gtk_stereo_dialog.o gtk_trajview_dialog.o gtk_wnd.o gtk_oglview_wnd.o gtk_p1dview_wnd.o gtk_p2dview_wnd.o gtk_eldview_wnd.o gtk_rcpview_wnd.o gtk_gpcview_wnd.o gtk_app.o gtk_project.o gtk_main.o -pthread -Wl,--export-dynamic /usr/lib64/libXi.so /usr/lib64/libXext.so /usr/lib64/libglut.so -lm -L/usr/X11R6/lib /usr/lib64/libgthread-2.0.so -lrt /usr/lib64/libgtkglext-x11-1.0.so /usr/lib64/libgdkglext-x11-1.0.so /usr/lib/libGLU.so /usr/lib64/libGL.so /usr/lib64/libXmu.so /usr/lib64/libXt.so /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libpangox-1.0.so /usr/lib64/libX11.so /usr/lib64/libglade-2.0.so /usr/lib64/libgtk-x11-2.0.so /usr/lib64/libxml2.so /usr/lib64/libgdk-x11-2.0.so /usr/lib64/libatk-1.0.so /usr/lib64/libgdk_pixbuf-2.0.so /usr/lib64/libpangocairo-1.0.so /usr/lib64/libpango-1.0.so /usr/lib64/libcairo.so /usr/lib64/libgobject-2.0.so /usr/lib64/libgmodule-2.0.so -ldl /usr/lib64/libglib-2.0.so /usr/lib64/libopenbabel.so -L/usr/lib /usr/lib64/libghemical.so /usr/lib64/libmopac7.so /usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so /usr/lib64/liboglappth.so /usr/lib64/libmopac7.so: undefined reference to `c_abs' /usr/lib64/libmopac7.so: undefined reference to `e_wsue' /usr/lib64/libmopac7.so: undefined reference to `do_lio' /usr/lib64/libmopac7.so: undefined reference to `flush_' /usr/lib64/libmopac7.so: undefined reference to `z_sqrt' /usr/lib64/libmopac7.so: undefined reference to `e_rsle' /usr/lib64/libmopac7.so: undefined reference to `e_wsfe' /usr/lib64/libmopac7.so: undefined reference to `i_len' /usr/lib64/libmopac7.so: undefined reference to `getenv_' /usr/lib64/libmopac7.so: undefined reference to `s_wsue' /usr/lib64/libmopac7.so: undefined reference to `d_int' /usr/lib64/libmopac7.so: undefined reference to `s_wdue' /usr/lib64/libmopac7.so: undefined reference to `pow_dd' /usr/lib64/libmopac7.so: undefined reference to `i_indx' /usr/lib64/libmopac7.so: undefined reference to `d_sign' /usr/lib64/libmopac7.so: undefined reference to `e_rsue' /usr/lib64/libmopac7.so: undefined reference to `e_wdue' /usr/lib64/libmopac7.so: undefined reference to `s_stop' /usr/lib64/libmopac7.so: undefined reference to `s_rsue' /usr/lib64/libmopac7.so: undefined reference to `pow_ii' /usr/lib64/libmopac7.so: undefined reference to `r_sign' /usr/lib64/libmopac7.so: undefined reference to `d_nint' /usr/lib64/libmopac7.so: undefined reference to `e_rsfe' /usr/lib64/libmopac7.so: undefined reference to `s_wsle' /usr/lib64/libmopac7.so: undefined reference to `do_uio' /usr/lib64/libmopac7.so: undefined reference to `e_rdue' /usr/lib64/libmopac7.so: undefined reference to `s_cmp' /usr/lib64/libmopac7.so: undefined reference to `d_lg10' /usr/lib64/libmopac7.so: undefined reference to `s_rdue' /usr/lib64/libmopac7.so: undefined reference to `f_rew' /usr/lib64/libmopac7.so: undefined reference to `r_cnjg' /usr/lib64/libmopac7.so: undefined reference to `s_copy' /usr/lib64/libmopac7.so: undefined reference to `s_cat' /usr/lib64/libmopac7.so: undefined reference to `s_rsfe' /usr/lib64/libmopac7.so: undefined reference to `e_wsle' /usr/lib64/libmopac7.so: undefined reference to `f_clos' /usr/lib64/libmopac7.so: undefined reference to `s_rsle' /usr/lib64/libmopac7.so: undefined reference to `do_fio' /usr/lib64/libmopac7.so: undefined reference to `i_dnnt' /usr/lib64/libmopac7.so: undefined reference to `s_wsfe' /usr/lib64/libmopac7.so: undefined reference to `pow_di' /usr/lib64/libmopac7.so: undefined reference to `z_exp' /usr/lib64/libmopac7.so: undefined reference to `f_open' collect2: ld returned 1 exit status make[3]: *** [ghemical] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all] Error 2 make: *** [all-recursive] Error 1 * * ERROR: sci-chemistry/ghemical-2.95 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 2430: Called die * The specific snippet of code: * emake || die "make failed" * The die message: * make failed * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/tmp/portage/sci-chemistry/ghemical-2.95/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/ghemical-2.95/temp/environment'. *