sci-biology:seqan-3.1.0:20241002-225434.log

sci-biology:seqan-3.1.0:20241002-225434.log (text/plain), 4.44 KB, created by Toralf Förster on 2024-10-03 08:15:07 UTC

 * Package:    sci-biology/seqan-3.1.0:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 cpu_flags_x86_sse4_2 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking seqan3-3.1.0-Source.tar.xz to /var/tmp/portage/sci-biology/seqan-3.1.0/work
>>> Source unpacked in /var/tmp/portage/sci-biology/seqan-3.1.0/work
>>> Preparing source in /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build"
 * Hardcoded definition(s) removed in submodules/sdsl-lite/CMakeLists.txt:
 *    set(CMAKE_BUILD_TYPE "Release")
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build"
cmake -C /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_toolchain.cmake /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source
loading initial cache file /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/gentoo_common_config.cmake
CMake Deprecation Warning at CMakeLists.txt:12 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The CXX compiler identification is GNU 15.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Finding SeqAn3 and checking requirements:
--   SeqAn3 include dir found:   /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/include
--   Detected as running from a repository checkout…
--     …adding submodule include:  /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/cereal/include
--     …adding submodule include:  /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/range-v3/include
--     …adding submodule include:  /var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source/submodules/sdsl-lite/include
--   C++ Standard-17 support:    builtin
--   C++ Concepts support:       via -std=c++20
--   C++ Filesystem header:      <filesystem>
--   C++ Filesystem library:     builtin
--   Thread support:             builtin.
--   Required dependency:        Range-V3 found.
CMake Error at build_system/seqan3-config.cmake:114 (message):
  The SDSL library is required, but wasn't found.  Get it from
  https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
  build_system/seqan3-config.cmake:379 (seqan3_config_error)
  CMakeLists.txt:29 (find_package)


-- Configuring incomplete, errors occurred!
 * ERROR: sci-biology/seqan-3.1.0::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  136:  Called src_configure
 *   environment, line 2193:  Called cmake_src_configure
 *   environment, line 1063:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/seqan-3.1.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/seqan-3.1.0::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:seqan-3.1.0:20241002-225434.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/seqan-3.1.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/seqan-3.1.0/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build'
 * S: '/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source'