build log

build.log (text/plain), 11.84 KB, created by tdr on 2024-04-30 05:57:10 UTC

 * Package:    sci-libs/atlas-3.10.2:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc fortran kernel_linux lapack threads
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking atlas3.10.2.tar.bz2 to /var/tmp/portage/sci-libs/atlas-3.10.2/work
>>> Unpacking lapack-3.6.0.tgz to /var/tmp/portage/sci-libs/atlas-3.10.2/work
>>> Source unpacked in /var/tmp/portage/sci-libs/atlas-3.10.2/work
>>> Preparing source in /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS ...
 * Applying atlas-3.10.2-x32-support.patch ...
patching file CONFIG/src/SpewMakeInc.c
Hunk #1 succeeded at 377 (offset 7 lines).
Hunk #2 succeeded at 425 with fuzz 2 (offset 7 lines).
patching file CONFIG/src/gnuccw.c
patching file CONFIG/src/gcc3p.c
patching file CONFIG/src/gnuf90w.c
patching file CONFIG/src/probe_comp.c
Hunk #1 succeeded at 618 with fuzz 2 (offset 4 lines).
Hunk #2 succeeded at 1911 (offset 218 lines).
patching file CONFIG/src/config.c
Hunk #2 succeeded at 1270 (offset -2 lines).
 [ ok ]
 * Applying atlas-3.10.2-format-security.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS ...
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include  -g -w -c /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/atlconf_misc.c
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include  -g -w -o xconfig /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/config.c atlconf_misc.o 
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-libs/atlas-3.10.2/temp/ccwIWkhY.o: in function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/config.c:224:(.text+0x83a): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
./xconfig -d s /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/ -d b /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared  -D c -DWALL -C acg 'gcc' -F acg '-march=native -O2 -pipe -fpermissive ' -Ss pmake '$(MAKE) -j56' -t -1 -Si omp 0 -b 64 -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-march=native -O3 -fno-vect-cost-model -pipe' -Si latune 1 -Si lapackref 1 -Fa alg -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: probe_OS.o: in function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_OS.c:224:(.text+0x83a): warning: the use of `tmpnam' is dangerous, better use `mkstemp'

OS configured as Linux (1)
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: probe_asm.o: in function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_asm.c:224:(.text+0x83a): warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Assembly configured as GAS_x8664 (2)
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: probe_vec.o: in function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_vec.c:224:(.text+0x83a): warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Vector ISA Extension configured as  AVXMAC (3,488)
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c: In function ‘ConfirmPtrbits’:
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:201:33: error: passing argument 1 of â€-Wincompatible-pointer-types[m[K][]]
  201 |    i = 1 + strlen(frm) + strlen(osnam) + strlen(osnam[OS]) +
      |                                 ^~~~~
      |                                 |
      |                                 char **
In file included from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include/atlconf.h:6,
                 from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:1:
/usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘char **’
  407 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
make: *** [Makefile:93: probe_arch.o] Error 1

Bad MACHTYPE value=0, res='NULL'

Architecture configured as  UNKNOWN (0)
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c: In function ‘ConfirmPtrbits’:
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:201:33: error: passing argument 1 of â€-Wincompatible-pointer-types[m[K][]]
  201 |    i = 1 + strlen(frm) + strlen(osnam) + strlen(osnam[OS]) +
      |                                 ^~~~~
      |                                 |
      |                                 char **
In file included from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include/atlconf.h:6,
                 from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:1:
/usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘char **’
  407 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
make: *** [Makefile:93: probe_arch.o] Error 1

Bad CPU MHZ value=0, res='NULL'

Clock rate configured as 0Mhz
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c: In function ‘ConfirmPtrbits’:
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:201:33: error: passing argument 1 of â€-Wincompatible-pointer-types[m[K][]]
  201 |    i = 1 + strlen(frm) + strlen(osnam) + strlen(osnam[OS]) +
      |                                 ^~~~~
      |                                 |
      |                                 char **
In file included from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include/atlconf.h:6,
                 from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:1:
/usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘char **’
  407 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
make: *** [Makefile:93: probe_arch.o] Error 1

Bad NCPU value=0, res='NULL'

Maximum number of threads configured as  0
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c: In function ‘ConfirmPtrbits’:
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:201:33: error: passing argument 1 of â€-Wincompatible-pointer-types[m[K][]]
  201 |    i = 1 + strlen(frm) + strlen(osnam) + strlen(osnam[OS]) +
      |                                 ^~~~~
      |                                 |
      |                                 char **
In file included from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include/atlconf.h:6,
                 from /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_arch.c:1:
/usr/include/string.h:407:35: note: expected ‘const char *’ but argument is of type ‘char **’
  407 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
make: *** [Makefile:93: probe_arch.o] Error 1
Cannot detect CPU throttling.
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include  -g -w -o xisgcc /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/IsGcc.c atlconf_misc.o 
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-libs/atlas-3.10.2/temp/ccE462vQ.o: in function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/IsGcc.c:224:(.text+0x83a): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/include  -g -w -c /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_comp.c
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_comp.c: In function ‘SelectBestGcc’:
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/src/probe_comp.c:1167:17: error: implicit declaration of function â€-Wimplicit-function-declaration[m[K][]]
 1167 |             if (CompIsMinGW(gccs[i]) || CompIsAppleGcc(gccs[i]))
      |                 ^~~~~~~~~~~
make: *** [Makefile:91: probe_comp.o] Error 1
ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 1 -A 0 -Si nof77 0 -V 488  -C ic 'gcc' -F ic '-march=native -O2 -pipe -fpermissive ' -Fa ic '-fPIC' -C sm 'gcc' -F sm '-march=native -O2 -pipe -fpermissive ' -Fa sm '-fPIC' -C dm 'gcc' -F dm '-march=native -O2 -pipe -fpermissive ' -Fa dm '-fPIC' -C sk 'gcc' -F sk '-march=native -O2 -pipe -fpermissive ' -Fa sk '-fPIC' -C dk 'gcc' -F dk '-march=native -O2 -pipe -fpermissive ' -Fa dk '-fPIC' -C xc 'gcc' -F xc '-march=native -O2 -pipe -fpermissive ' -Fa xc '-fPIC' -C gc 'gcc' -F gc '-march=native -O2 -pipe -fpermissive ' -Fa gc '-fPIC' -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-march=native -O3 -fno-vect-cost-model -pipe' -Fa if '-fPIC' -b 64"'
mkdir src bin tune interfaces
cd src ; mkdir testing auxil blas lapack pthreads threads
cd src/blas ; \
           mkdir f77reference reference gemv ger gemm kbmm \
                 level1 level2 level3 pklevel3
cd src/blas/reference ; mkdir level1 level2 level3
cd src/blas/level2 ; mkdir kernel
cd src/blas/pklevel3 ; mkdir gpmm sprk
cd src/blas/level3 ; mkdir rblas kernel
cd src/pthreads ; mkdir blas misc
cd src/pthreads/blas ; mkdir level1 level2 level3
cd src/threads ; mkdir blas lapack
cd src/threads/blas ; mkdir level3 level2
cd tune ; mkdir blas sysinfo lapack threads
cd tune/blas ; mkdir gemm gemv ger level1 level3
cd interfaces ; mkdir blas lapack
cd interfaces/lapack ; mkdir C F77
cd interfaces/lapack/C ; mkdir src testing
cd interfaces/lapack/F77 ; mkdir src testing
cd interfaces/blas ; mkdir C F77
cd interfaces/blas/C ; mkdir src testing
cd interfaces/blas/F77 ; mkdir src testing
cd interfaces/lapack ; mkdir C2F
cd interfaces/lapack/C2F ; mkdir src
mkdir ARCHS
make -f Make.top startup
make[1]: Entering directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared'
Make.top:1: Make.inc: No such file or directory
make[1]: *** No rule to make target 'Make.inc'.  Stop.
make[1]: Leaving directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared'
make: *** [Makefile:493: startup] Error 2
mv: cannot stat 'lib/Makefile': No such file or directory
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/configure: line 450: lib/Makefile: No such file or directory
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/configure: line 451: lib/Makefile: No such file or directory
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/configure: line 452: lib/Makefile: No such file or directory
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/configure: line 453: lib/Makefile: No such file or directory
/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS/configure: line 509: lib/Makefile: No such file or directory
DONE configure
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS ...
make -j56 -j1 build 
make -f Make.top build
make[1]: Entering directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared'
Make.top:1: Make.inc: No such file or directory
make[1]: *** No rule to make target 'Make.inc'.  Stop.
make[1]: Leaving directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared'
make: *** [Makefile:488: build] Error 2
 * ERROR: sci-libs/atlas-3.10.2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/atlas-3.10.2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/atlas-3.10.2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:atlas-3.10.2:20240430-054816.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/atlas-3.10.2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared'
 * S: '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS'