build.log

build.log (text/plain), 111.98 KB, created by Agostino Sarubbo on 2024-03-21 09:21:17 UTC

 * Package:    sci-biology/qrna-2.0.3c-r3:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox


@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
This ebuild was merged at the following commit:
https://github.com/gentoo-mirror/gentoo/commit/b9054231eadf66721f66dd546cc797071490a552  (Wed Mar 20 19:49:14 UTC 2024)
@@@@@ END @@@@@



##################
# emerge --info: #
##################
Portage 3.0.63 (python 3.12.2-final-0, default/linux/amd64/17.1, gcc-13, glibc-2.39-r2, 6.1.66-gentoo-dist x86_64)
=================================================================
System uname: Linux-6.1.66-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-glibc2.39
KiB Mem:   263452516 total,  43410632 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Wed, 20 Mar 2024 19:49:13 +0000
sh bash 5.2_p26
ld GNU ld (Gentoo 2.42 p3) 2.42.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p26::gentoo
dev-build/autoconf:        2.72-r1::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.28.3::gentoo
dev-build/libtool:         2.4.7-r2::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.4.0-r1::gentoo
dev-lang/perl:             5.38.2-r2::gentoo
dev-lang/python:           3.10.14::gentoo, 3.11.8_p1::gentoo, 3.12.2_p1::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/openrc:           0.53::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-devel/binutils:        2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc:             13.2.1_p20240210::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-kernel/linux-headers:  6.7::gentoo (virtual/os-headers)
sys-libs/glibc:            2.39-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: True
    sync-rsync-verify-max-age: 3
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes

Binary Repositories:

gentoobinhost
    priority: 1
    sync-uri: https://gentoo.osuosl.org/releases/amd64/binpackages/17.1/x86-64

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* GPL-2"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
DISTDIR="/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/distdir"
EMERGE_DEFAULT_OPTS="--complete-graph y --with-bdeps=y -1 -k -b --backtrack=100"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
LEX="flex"
MAKEOPTS="-j32"
PKGDIR="/root/tbci/binpkg"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cli crypt debug dri elogind fortran gdbm iconv ipv6 jumbo-build libtirpc lto multilib native-symlinks ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS





##############################
# emerge history (qlop -mv): #
##############################
2024-03-20T22:00:45 >>> sci-biology/hmmer-2.3.2-r5




#######################################
# installed packages (qlist -ICvUSS): #
#######################################
acct-group/audio-0-r3:0
acct-group/cdrom-0-r3:0
acct-group/dialout-0-r3:0
acct-group/disk-0-r3:0
acct-group/floppy-0-r1:0
acct-group/input-0-r3:0
acct-group/kmem-0-r3:0
acct-group/kvm-0-r3:0
acct-group/lp-0-r3:0
acct-group/man-0-r3:0
acct-group/messagebus-0-r3:0
acct-group/polkitd-0-r3:0
acct-group/portage-0-r2:0
acct-group/render-0-r3:0
acct-group/root-0-r2:0
acct-group/sgx-0-r2:0
acct-group/sshd-0-r3:0
acct-group/tape-0-r3:0
acct-group/tty-0-r3:0
acct-group/usb-0-r3:0
acct-group/video-0-r3:0
acct-user/man-1-r3:0
acct-user/messagebus-0-r3:0
acct-user/polkitd-0-r3:0
acct-user/portage-0-r3:0
acct-user/sshd-0-r3:0
app-admin/eselect-1.4.27-r1:0 -doc -emacs -vim-syntax
app-admin/perl-cleaner-2.31:0 -pkgcore
app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr
app-alternatives/bc-0:0 -gh gnu
app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr
app-alternatives/cpio-0:0 gnu -libarchive split-usr
app-alternatives/gzip-1:0 -pigz reference split-usr
app-alternatives/lex-0-r1:0 flex -reflex
app-alternatives/ninja-1:0 reference -samurai
app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh
app-alternatives/tar-0:0 gnu -libarchive split-usr
app-alternatives/yacc-1-r2:0 bison -byacc -reference
app-arch/bzip2-1.0.8-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static -static-libs -verify-sig
app-arch/cpio-2.15:0 nls
app-arch/gzip-1.13:0 -pic -static -verify-sig
app-arch/libarchive-3.7.2-r2:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -test -verify-sig xattr -zstd
app-arch/tar-1.35:0 acl -minimal nls -selinux -verify-sig xattr
app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode
app-arch/xz-utils-5.6.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_crc32 -doc extra-filters nls -pgo -static-libs -verify-sig
app-arch/zstd-1.5.5-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma -static-libs -test zlib
app-crypt/gnupg-2.4.5:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server
app-crypt/gpgme-1.23.2:1/11.6.15.2 -common-lisp cxx debug -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -qt5 -qt6 -static-libs -test -verify-sig
app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs
app-crypt/libmd-1.1.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
app-crypt/pinentry-1.3.0-r2:0 -X -caps -efl -emacs -gtk -keyring ncurses -qt5 -qt6 -verify-sig -wayland
app-crypt/rhash-1.4.4-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs
app-editors/nano-7.2-r1:0 -debug -justify -magic -minimal ncurses nls spell -static unicode
app-eselect/eselect-fontconfig-20220403:0
app-eselect/eselect-iptables-20220320:0
app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0
app-eselect/eselect-pinentry-0.7.4:0
app-i18n/man-pages-ja-20180315-r1:0
app-i18n/man-pages-l10n-4.19.0:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi
app-i18n/man-pages-zh_CN-1.6.4.0:0
app-misc/ca-certificates-20240203.3.98:0 -cacert
app-misc/editor-wrapper-4-r1:0
app-misc/mime-types-2.1.54:0 -nginx
app-misc/pax-utils-1.3.7:0 -caps -man -python -python_single_target_python3_10 python_single_target_python3_11 -seccomp -test
app-misc/tmux-3.4:0 debug -selinux -systemd -utempter -vim-syntax
app-portage/eix-0.36.7:0 debug -doc nls -sqlite
app-portage/elt-patches-20240315:0
app-portage/gemato-20.5:0 gpg -pretty-log python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test -tools
app-portage/gentoolkit-0.6.5:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
app-portage/getuto-1.11:0 -test
app-portage/portage-utils-0.96.1:0 openmp qmanifest qtegrity -static
app-shells/bash-5.2_p26:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline -verify-sig
app-shells/bash-completion-2.11:0 eselect -test
app-shells/gentoo-bashcomp-20230313:0
app-shells/push-3.4:0
app-shells/quoter-4.2:0
app-text/ansifilter-2.20:0 -gui -verify-sig
app-text/asciidoc-10.2.0:0 -python_single_target_pypy3 -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12
app-text/build-docbook-catalog-2.4:0
app-text/docbook-xml-dtd-4.5-r2:4.5
app-text/docbook-xml-dtd-4.4-r3:4.4
app-text/docbook-xml-dtd-4.2-r3:4.2
app-text/docbook-xml-dtd-4.1.2-r7:4.1.2
app-text/docbook-xsl-ns-stylesheets-1.79.1:0 -ruby
app-text/docbook-xsl-stylesheets-1.79.1-r4:0 -ruby
app-text/manpager-1:0
app-text/opensp-1.5.2-r10:0 -doc nls -static-libs -test
app-text/po4a-0.71:0 -test -test
app-text/sgml-common-0.6.3-r7:0
app-text/xmlto-0.0.28-r11:0 -latex text
dev-build/autoconf-2.72-r1:2.72 -emacs -verify-sig
dev-build/autoconf-archive-2023.02.20:0
dev-build/autoconf-wrapper-20231224:0
dev-build/automake-1.16.5-r2:1.16 -test
dev-build/automake-wrapper-20221207:0
dev-build/cmake-3.28.3:0 -dap -doc -gui ncurses -qt6 -test -test -verify-sig
dev-build/gtk-doc-am-1.33.2:0
dev-build/libtool-2.4.7-r2:2 -vanilla
dev-build/make-4.4.1-r1:0 -guile nls -static -verify-sig
dev-build/meson-1.4.0-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test -verify-sig
dev-build/meson-format-array-0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
dev-build/ninja-1.11.1-r5:0 -doc -test
dev-db/sqlite-3.45.1-r1:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools
dev-lang/duktape-2.7.0-r3:0/2.7.0
dev-lang/perl-5.38.2-r2:0/5.38 -berkdb debug -doc gdbm ithreads -minimal -quadmath
dev-lang/python-3.12.2_p1:3.12 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig
dev-lang/python-3.11.8_p1:3.11 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig
dev-lang/python-3.10.14:3.10 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig
dev-lang/python-exec-2.4.10:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
dev-lang/tcl-8.6.14:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug threads
dev-libs/boehm-gc-8.2.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads
dev-libs/elfutils-0.191:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -debuginfod -lzma nls -static-libs -test utils -verify-sig -zstd
dev-libs/expat-2.6.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs -test unicode
dev-libs/glib-2.78.4-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr
dev-libs/gmp-6.3.0-r1:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc -pic -static-libs
dev-libs/gobject-introspection-1.78.1:0 -doctool -gtk-doc -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 -test
dev-libs/gobject-introspection-common-1.78.1:0
dev-libs/isl-0.26:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/jsoncpp-1.9.5:0/25 -doc -test
dev-libs/libassuan-2.5.7:0 -verify-sig
dev-libs/libatomic_ops-7.8.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32
dev-libs/libbsd-0.11.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
dev-libs/libevent-2.1.12-r1:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime debug -malloc-replacement ssl -static-libs -test -verbose-debug -verify-sig
dev-libs/libffi-3.4.6:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -exec-static-trampoline -pax-kernel -static-libs -test
dev-libs/libgcrypt-1.10.3-r2:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs -verify-sig
dev-libs/libgpg-error-1.48:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test -verify-sig
dev-libs/libksba-1.6.6:0 -static-libs -verify-sig
dev-libs/libpcre2-10.43:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline -static-libs unicode -valgrind -verify-sig zlib
dev-libs/libpipeline-1.5.7:0 -test
dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -verify-sig
dev-libs/libunistring-1.2:0/5 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
dev-libs/libuv-1.48.0:0/1 -verify-sig
dev-libs/libxml2-2.12.6:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 readline -static-libs -test
dev-libs/libxslt-1.1.39:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt debug -examples -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -static-libs
dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs
dev-libs/mpc-1.3.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/mpfr-4.2.1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
dev-libs/nettle-3.9.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig
dev-libs/npth-1.7-r1:0 -test
dev-libs/openssl-3.2.1-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -fips -ktls -rfc3779 -sctp -static-libs -test -tls-compression -vanilla -verify-sig -verify-sig -weak-ssl-ciphers
dev-libs/popt-1.19-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
dev-perl/Encode-EUCJPASCII-0.30.0-r1:0 -test
dev-perl/Encode-HanExtra-0.230.0-r3:0
dev-perl/Encode-Locale-1.50.0-r1:0 -test
dev-perl/ExtUtils-CChecker-0.110.0:0 -test
dev-perl/File-BaseDir-0.90.0:0 -test
dev-perl/File-DesktopEntry-0.220.0-r1:0 -test
dev-perl/File-MimeInfo-0.330.0:0 -test
dev-perl/IO-Socket-SSL-2.85.0:0 -examples -idn -test
dev-perl/IPC-System-Simple-1.300.0:0 -test
dev-perl/Locale-gettext-1.70.0-r1:0 -test
dev-perl/MIME-Charset-1.13.1:0 l10n_ja l10n_zh -test
dev-perl/Module-Build-0.423.400:0 -test
dev-perl/Mozilla-CA-20999999-r1:0 -test
dev-perl/Net-SSLeay-1.940.0:0 -examples -examples -minimal -test
dev-perl/Pod-Parser-1.660.0:0 -test
dev-perl/Regexp-IPv6-0.30.0-r2:0 -test
dev-perl/SGMLSpm-1.1-r2:0 -test
dev-perl/Syntax-Keyword-Try-0.290.0:0 -test
dev-perl/TermReadKey-2.380.0-r1:0 -examples -test
dev-perl/Text-CharWidth-0.40.0-r2:0 -test
dev-perl/Text-WrapI18N-0.60.0-r2:0 -test
dev-perl/Unicode-LineBreak-2019.1.0:0
dev-perl/URI-5.210.0:0 -test
dev-perl/XS-Parse-Keyword-0.380.0:0 -test
dev-perl/YAML-Tiny-1.740.0:0 -minimal -test
dev-python/certifi-3021.3.16-r4:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/charset-normalizer-3.3.2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/cython-3.0.9:0 debug -doc python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/editables-0.5:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/ensurepip-pip-24.0:0
dev-python/ensurepip-setuptools-69.2.0:0
dev-python/ensurepip-wheels-100:0
dev-python/flit-core-3.9.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/gentoo-common-1:0
dev-python/gpep517-15:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/hatchling-1.22.3:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/idna-3.6:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/installer-0.7.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/jaraco-context-4.3.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/jaraco-functools-4.0.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/jaraco-text-3.12.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/jinja-3.1.3:0 -doc -examples python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/lxml-5.1.0:0 debug -doc -examples python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test threads
dev-python/markupsafe-2.1.5:0 debug python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/more-itertools-10.2.0:0 -doc python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/nspektr-0.5.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/ordered-set-4.1.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/packaging-24.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/pathspec-0.12.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/platformdirs-4.2.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/pluggy-1.4.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/pypy3-7.3.15:0/pypy310-pp73-384 gdbm ncurses sqlite -tk
dev-python/pypy3_10-7.3.15:0/pypy310-pp73-384 ensurepip gdbm jit ncurses sqlite -tk
dev-python/pypy3_10-exe-bin-7.3.15:7.3.15
dev-python/PySocks-1.7.1-r2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
dev-python/requests-2.31.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -socks5 -test test-rust
dev-python/setuptools-69.2.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/setuptools-scm-8.0.4:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/tomli-2.0.1-r1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/trove-classifiers-2024.3.3:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/typing-extensions-4.10.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-python/urllib3-2.2.1:0 -brotli -http2 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test -zstd
dev-python/wheel-0.43.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test
dev-util/checkbashisms-2.23.5:0
dev-util/desktop-file-utils-0.27-r1:0
dev-util/glib-utils-2.78.4:0 -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12
dev-util/gperf-3.1-r2:0
dev-util/pkgconf-2.1.1:0/4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 native-symlinks -test
dev-util/re2c-3.1:0 debug -test
dev-vcs/git-2.44.0:0 blksha1 -cgi curl -cvs -doc gpg -highlight iconv -keyring -mediawiki nls pcre -perforce -perl -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 safe-directory -selinux -subversion -test -tk webdav -xinetd
media-fonts/liberation-fonts-2.1.5:0 -X -X -fontforge
media-gfx/graphite2-1.3.14_p20210810-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test
media-libs/fontconfig-2.15.0:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc nls -test
media-libs/freetype-2.13.2:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting debug -doc -fontforge harfbuzz png -static-libs -svg -utils
media-libs/harfbuzz-8.3.1:0/6.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo debug -doc -experimental glib graphite -icu introspection -test truetype
media-libs/libpng-1.6.43:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs -test
net-dns/c-ares-1.27.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -verify-sig
net-dns/libidn2-2.3.7:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs -verify-sig
net-firewall/iptables-1.8.10-r1:0/1.8.3 -conntrack -netlink -nftables -pcap -static-libs -test
net-libs/gnutls-3.8.3:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -verify-sig zlib -zstd
net-libs/libmnl-1.0.5:0/0.2.0 -examples -verify-sig
net-libs/libnsl-2.0.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
net-libs/libpsl-0.21.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -icu idn -test
net-libs/libtirpc-1.3.4-r2:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -kerberos -static-libs
net-libs/nghttp2-1.60.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -hpack-tools -jemalloc -static-libs -systemd -test -utils -xml
net-misc/curl-8.6.0-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adns alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls curl_ssl_openssl -curl_ssl_rustls ftp -gnutls -gopher hsts http2 -idn imap -kerberos -ldap -mbedtls -nghttp3 openssl pop3 progress-meter psl -rtmp -rustls -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -verify-sig -websockets -zstd
net-misc/dhcpcd-10.0.6-r2:0 debug embedded ipv6 -privsep udev
net-misc/iputils-20240117:0 arping -caps -clockdiff -doc filecaps -idn nls -test -tracepath
net-misc/netifrc-0.7.8:0 dhcp
net-misc/openssh-contrib-9.6_p1:0 -X -X509 -abi_mips_n32 -audit debug -hpn -kerberos -ldns -libedit -livecd pam -pie -security-key -selinux ssl -static -test -verify-sig -xmss
net-misc/rsync-3.2.7-r4:0 acl -examples iconv -lz4 -python_single_target_python3_10 python_single_target_python3_11 -rrsync ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd
net-misc/wget-1.21.4:0 -cookie-check debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib
perl-core/File-Temp-0.231.100:0
perl-core/Math-BigInt-1.999.842:0 -examples -test
sci-biology/hmmer-2.3.2-r5:2 -cpu_flags_ppc_altivec -test
sec-keys/openpgp-keys-gentoo-release-20230329:0 -test
sys-apps/acl-2.3.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
sys-apps/attr-2.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls -static-libs
sys-apps/baselayout-2.15:0 -build split-usr
sys-apps/coreutils-9.4-r1:0 acl -caps -gmp -hostname -kill -multicall nls openssl -selinux split-usr -static -test -vanilla -verify-sig xattr
sys-apps/dbus-1.15.8:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc elogind -selinux -static-libs -systemd -test -test -valgrind
sys-apps/diffutils-3.10:0 nls -verify-sig
sys-apps/file-5.45-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzip -lzma -python python_targets_python3_10 python_targets_python3_11 -seccomp -static-libs -verify-sig zlib -zstd
sys-apps/findutils-4.9.0-r2:0 nls -selinux -static -test -verify-sig
sys-apps/gawk-5.3.0-r1:0 -mpfr nls -pma readline -verify-sig
sys-apps/gentoo-functions-0.19:0
sys-apps/grep-3.11:0 egrep-fgrep nls pcre -static -verify-sig
sys-apps/groff-1.23.0:0 -X -examples -uchardet
sys-apps/help2man-1.49.3:0 nls
sys-apps/install-xattr-0.8-r1:0
sys-apps/iproute2-6.6.0-r3:0 -atm -berkdb -bpf -caps -elf iptables -minimal -nfs -selinux
sys-apps/kbd-2.6.4:0 nls pam -selinux -test
sys-apps/kmod-32-r1:0 debug -doc lzma -pkcs7 split-usr -static-libs tools zlib zstd
sys-apps/less-643-r1:0 pcre -test
sys-apps/locale-gen-2.23-r1:0
sys-apps/man-db-2.12.0:0 manpager nls seccomp -selinux -static-libs zlib
sys-apps/man-pages-6.06:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_ja l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi l10n_zh-CN -verify-sig
sys-apps/miscfiles-1.5-r4:0 -minimal
sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static
sys-apps/openrc-0.53:0 -audit -bash debug ncurses netifrc -newnet pam -s6 -selinux -sysv-utils sysvinit unicode
sys-apps/portage-3.0.63:0 -apidoc -build -doc -gentoo-dev ipc native-extensions python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 rsync-verify -selinux -test xattr
sys-apps/sandbox-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 nnp
sys-apps/sed-4.9:0 acl nls -selinux -static -verify-sig
sys-apps/shadow-4.14.6:0/4 acl -audit -cracklib nls pam -selinux -skey split-usr -su -systemd -verify-sig xattr
sys-apps/systemd-utils-254.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot -kernel-install kmod -python_single_target_python3_10 python_single_target_python3_11 -python_single_target_python3_12 -secureboot -selinux split-usr -sysusers -test tmpfiles udev -ukify
sys-apps/sysvinit-3.08:0 -ibm nls -selinux -static -verify-sig
sys-apps/texinfo-7.1-r1:0 nls standalone -static
sys-apps/util-linux-2.39.3-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 readline -rtas -selinux -slang -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig
sys-apps/which-2.21:0
sys-auth/elogind-252.9:0 acl -audit cgroup-hybrid debug -doc pam policykit -selinux -test
sys-auth/pambase-20240128:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -sssd -systemd -yescrypt
sys-auth/passwdqc-2.0.3-r1:0
sys-auth/polkit-124-r1:0 daemon duktape -examples -gtk introspection -kde pam -selinux -systemd -test
sys-devel/bc-1.07.1-r6:0 -libedit readline -static
sys-devel/binutils-2.42-r1:2.42 -cet -debuginfod -doc -gold -gprofng -hardened -multitarget nls -pgo plugins -static-libs -test -vanilla -zstd
sys-devel/binutils-config-5.5:0 native-symlinks
sys-devel/bison-3.8.2-r2:0 -examples nls -static -test -verify-sig
sys-devel/flex-2.6.4-r6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test
sys-devel/gcc-13.2.1_p20240210:13 -ada -cet -custom-cflags cxx -d -debug -default-stack-clash-protection -default-znow -doc -fixed-point fortran -go graphite -hardened -ieee-long-double -jit -libssp lto -modula2 multilib nls -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd
sys-devel/gcc-config-2.11:0 cc-wrappers native-symlinks
sys-devel/gettext-0.22.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs -verify-sig xattr
sys-devel/gnuconfig-20230731:0
sys-devel/m4-1.4.19-r2:0 -examples nls -verify-sig
sys-devel/patch-2.7.6-r5:0 -static -test -verify-sig xattr
sys-fs/e2fsprogs-1.47.0-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse nls -static-libs -test tools
sys-fs/udev-init-scripts-35:0
sys-kernel/dracut-060_pre20240104-r4:0 -selinux -test
sys-kernel/gentoo-kernel-bin-6.1.82:6.1.82 initramfs -test
sys-kernel/installkernel-33:0 dracut -efistub -grub -refind -systemd -systemd-boot -uki -ukify
sys-kernel/linux-headers-6.7:0 -headers-only
sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test -verify-sig
sys-libs/glibc-2.39-r2:2.2 -audit -caps -cet -compile-locales -custom-cflags -doc -gd -hash-sysv-compat -headers-only multiarch multilib -multilib-bootstrap -nscd -perl -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla
sys-libs/libcap-2.69-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam -static-libs -tools
sys-libs/libseccomp-2.5.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -experimental-loong -python python_targets_python3_10 python_targets_python3_11 -static-libs -test
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sys-libs/ncurses-6.4_p20230401:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx debug -doc -gpm -minimal -profile split-usr -split-usr stack-realign -static-libs -test tinfo -trace -verify-sig
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sys-libs/readline-8.2_p10:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs unicode -utils -verify-sig
sys-libs/timezone-data-2024a-r1:0 -leaps-timezone nls -zic-slim
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sys-process/procps-4.0.4-r1:0/0-ng -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux -static-libs -systemd -test unicode
sys-process/psmisc-23.7:0 -X -apparmor nls -selinux -test
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virtual/dev-manager-0-r2:0
virtual/dist-kernel-6.1.82:0/6.1.82
virtual/editor-0-r7:0
virtual/libc-1-r1:0
virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libudev-251-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd
virtual/man-0-r4:0
virtual/openssh-0:0 ssl
virtual/os-headers-0-r2:0
virtual/package-manager-1:0
virtual/pager-0-r1:0
virtual/perl-bignum-0.660.0:0
virtual/perl-Carp-1.540.0:0
virtual/perl-CPAN-2.360.0:0
virtual/perl-CPAN-Meta-2.150.10-r7:0
virtual/perl-CPAN-Meta-YAML-0.18.0-r9:0
virtual/perl-Data-Dumper-2.188.0:0
virtual/perl-Encode-3.190.0:0
virtual/perl-Exporter-5.770.0-r1:0
virtual/perl-ExtUtils-CBuilder-0.280.238:0
virtual/perl-ExtUtils-Install-2.220.0:0
virtual/perl-ExtUtils-MakeMaker-7.700.0:0
virtual/perl-ExtUtils-Manifest-1.730.0-r2:0
virtual/perl-ExtUtils-ParseXS-3.510.0:0
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virtual/perl-File-Spec-3.880.0:0
virtual/perl-File-Temp-0.231.100:0
virtual/perl-Getopt-Long-2.540.0:0
virtual/perl-JSON-PP-4.160.0-r1:0
virtual/perl-libnet-3.150.0:0 ssl
virtual/perl-Math-BigInt-1.999.842:0
virtual/perl-Math-BigInt-FastCalc-0.501.300:0
virtual/perl-Math-BigRat-0.262.400:0
virtual/perl-Math-Complex-1.620.0:0
virtual/perl-MIME-Base64-3.160.100_rc:0
virtual/perl-Module-Metadata-1.0.37-r3:0
virtual/perl-parent-0.241.0:0
virtual/perl-Parse-CPAN-Meta-2.150.10-r7:0
virtual/perl-Perl-OSType-1.10.0-r7:0
virtual/perl-podlators-5.10.0:0
virtual/perl-Scalar-List-Utils-1.630.0:0
virtual/perl-Test-Harness-3.440.0-r1:0
virtual/perl-Text-ParseWords-3.310.0-r1:0
virtual/perl-Unicode-Collate-1.310.0-r1:0
virtual/perl-version-0.992.900-r1:0
virtual/pkgconfig-3:0 native-symlinks
virtual/service-manager-1-r1:0
virtual/ssh-0-r2:0 -minimal
virtual/tmpfiles-0-r5:0 -systemd
virtual/ttf-fonts-1-r2:0
virtual/udev-217-r7:0 -systemd
virtual/w3m-1:0
www-client/pybugz-0.14:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface
x11-base/xcb-proto-1.16.0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12
x11-base/xorg-proto-2023.2:0 -test
x11-libs/cairo-1.18.0:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test
x11-libs/libX11-1.8.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libxcb-1.16.1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb
x11-libs/libXdmcp-1.1.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libXext-1.3.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
x11-libs/libXrender-0.9.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
x11-libs/pixman-0.43.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test
x11-libs/xtrans-1.5.0:0 -doc
x11-misc/compose-tables-1.8.7:0
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x11-misc/xdg-utils-1.2.1-r1:0 -X -dbus -doc -gnome


#############
# build.log #
#############


>>> Unpacking source...
>>> Unpacking qrna-2.0.3c.tar.bz2 to /var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work
>>> Source unpacked in /var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work
>>> Preparing source in /var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c ...
 * Applying qrna-2.0.3c-glibc-2.10.patch ...
 [ ok ]
 * Applying qrna-2.0.3c-ldflags.patch ...
 [ ok ]
removed 'squid02/libsquid.a'
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c ...
make -j32 -C squid 
make: Entering directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/squid'
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c aligneval.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c alignio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c cluster.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c dayhoff.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c file.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c getopt.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c interleaved.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c sqerror.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c gnuregex.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c sqio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c iupac.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c msf.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c revcomp.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c rk.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c selex.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c seqencode.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c sre_ctype.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c sre_math.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c sre_string.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c stack.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c translate.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c types.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing   -c weight.c
gnuregex.c: In function ‘re_match_2’:
gnuregex.c:3752:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 3752 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                               ^
gnuregex.c:3752:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 3752 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                                                      ^
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2394 |     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3758:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3758 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2397 |     PUSH_FAILURE_ITEM (highest_active_reg);                             \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3758:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3758 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2394 |     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3905:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3905 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2397 |     PUSH_FAILURE_ITEM (highest_active_reg);                             \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3905:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3905 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2394 |     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3958:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3958 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2397 |     PUSH_FAILURE_ITEM (highest_active_reg);                             \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:3958:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3958 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 2482 |   high_reg = (unsigned) POP_FAILURE_ITEM ();                            \
      |              ^
gnuregex.c:4064:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4064 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 2485 |   low_reg = (unsigned) POP_FAILURE_ITEM ();                             \
      |             ^
gnuregex.c:4064:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4064 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2394 |     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:4097:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4097 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2397 |     PUSH_FAILURE_ITEM (highest_active_reg);                             \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:4097:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4097 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2394:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2394 |     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:4110:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4110 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-to-pointer-cast]]
 2315 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
gnuregex.c:2397:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2397 |     PUSH_FAILURE_ITEM (highest_active_reg);                             \
      |     ^~~~~~~~~~~~~~~~~
gnuregex.c:4110:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4110 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 2482 |   high_reg = (unsigned) POP_FAILURE_ITEM ();                            \
      |              ^
gnuregex.c:4278:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4278 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-to-int-cast]]
 2485 |   low_reg = (unsigned) POP_FAILURE_ITEM ();                             \
      |             ^
gnuregex.c:4278:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4278 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-ar rcv libsquid.a aligneval.o alignio.o cluster.o dayhoff.o file.o getopt.o interleaved.o sqerror.o gnuregex.o sqio.o iupac.o msf.o revcomp.o rk.o selex.o seqencode.o sre_ctype.o sre_math.o sre_string.o stack.o translate.o types.o weight.o
a - aligneval.o
a - alignio.o
a - cluster.o
a - dayhoff.o
a - file.o
a - getopt.o
a - interleaved.o
a - sqerror.o
a - gnuregex.o
a - sqio.o
a - iupac.o
a - msf.o
a - revcomp.o
a - rk.o
a - selex.o
a - seqencode.o
a - sre_ctype.o
a - sre_math.o
a - sre_string.o
a - stack.o
a - translate.o
a - types.o
a - weight.o
if test -x /bin/ranlib; then /bin/ranlib libsquid.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libsquid.a; else exit 0; fi
if test -x x86_64-pc-linux-gnu-ranlib; then x86_64-pc-linux-gnu-ranlib libsquid.a; else exit 0; fi
chmod 644 libsquid.a
make: Leaving directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/squid'
make -j32 -C squid02 
make: Entering directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/squid02'
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c afetch_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c a2m.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c aligneval.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c alignio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c clustal.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c cluster.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c dayhoff.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c eps.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c file.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c getopt.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c gki.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c gsi.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c hsregex.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c iupac.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c msa.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c msf.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c phylip.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c revcomp.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c rk.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c selex.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c seqencode.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c shuffle.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sqerror.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sqio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c squidcore.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sre_ctype.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sre_math.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sre_random.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sre_string.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c ssi.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c stack.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c stockholm.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c stopwatch.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c translate.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c types.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c vectorops.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c weight.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c alistat_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c compalign_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c compstruct_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c revcomp_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c seqsplit_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c seqstat_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sfetch_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c shuffle_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sindex_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c sreformat_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c translate_main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing    -DHAVE_CONFIG_H -c weight_main.c
ssi.c: In function ‘SSIAddPrimaryKeyToIndex’:
ssi.c:748:42: warning: comparison between pointer and integer
  748 |               (unsigned long long) d_off == NULL? 0 : d_off->off.i64,
      |                                          ^~
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o afetch afetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o alistat alistat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o compalign compalign_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o compstruct compstruct_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o revcomp revcomp_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o seqsplit seqsplit_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o seqstat seqstat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o sfetch sfetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o shuffle shuffle_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o sindex sindex_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o sreformat sreformat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o translate translate_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DHAVE_CONFIG_H  -o weight weight_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o  -lm
x86_64-pc-linux-gnu-ar rcv libsquid.a a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o
a - a2m.o
a - aligneval.o
a - alignio.o
a - clustal.o
a - cluster.o
a - dayhoff.o
a - eps.o
a - file.o
a - getopt.o
a - gki.o
a - gsi.o
a - hsregex.o
a - iupac.o
a - msa.o
a - msf.o
a - phylip.o
a - revcomp.o
a - rk.o
a - selex.o
a - seqencode.o
a - shuffle.o
a - sqerror.o
a - sqio.o
a - squidcore.o
a - sre_ctype.o
a - sre_math.o
a - sre_random.o
a - sre_string.o
a - ssi.o
a - stack.o
a - stockholm.o
a - stopwatch.o
a - translate.o
a - types.o
a - vectorops.o
a - weight.o
x86_64-pc-linux-gnu-ranlib libsquid.a
chmod 644 libsquid.a
make: Leaving directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/squid02'
make -j32 -C src 
make: Entering directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/src'
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/cfgio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/cfgmodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/cfgparse.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/codcreatealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/coddp.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/coddpscanfast.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/codmodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/codon.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/codscorealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/er_math.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evd.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolcodmodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolemissions.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolmisc.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolothmodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolnullmodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolqrnaversion.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolriboprob.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolrnadp.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolrnadpscanfast.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolrnamodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolrnascorealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolscorewithmodels.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolscorewithmodelscanfast.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/evolve.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/globals.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/hexamer.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/matrix.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/misc.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/nrnscfg.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/nullmodel.c
../src/codon.c: In function ‘ParseTargetFreqFile’:
../src/codon.c:181:7: warning: implicit declaration of function ‘PrintVectorProbs’ [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  181 |       PrintVectorProbs(stdout, targetfreq, nsymbols);
      |       ^~~~~~~~~~~~~~~~
../src/codon.c:183:5: warning: implicit declaration of function ‘CheckSingleProb’ [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  183 |     CheckSingleProb(targetfreq, nsymbols); /* paranoia */
      |     ^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/othcreatealign.c
../src/evolcodmodel.c: In function ‘EvolChangeCODProbsNaive’:
../src/evolcodmodel.c:272:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  272 |     fprintf(stdout, "pos 1: %f %\n", ave_1_error*100.0);
      |                                 ^~
../src/evolcodmodel.c:273:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  273 |     fprintf(stdout, "pos 2: %f %\n", ave_2_error*100.0);
      |                                 ^~
../src/evolcodmodel.c:274:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  274 |     fprintf(stdout, "pos 3: %f %\n", ave_3_error*100.0);
      |                                 ^~
../src/evolcodmodel.c: In function ‘EvolChangeCODProbsYuAltchul’:
../src/evolcodmodel.c:420:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  420 |     fprintf(stdout, "pos 1: %f %\n", ave_1_error*100.0);
      |                                 ^~
../src/evolcodmodel.c:421:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  421 |     fprintf(stdout, "pos 2: %f %\n", ave_2_error*100.0);
      |                                 ^~
../src/evolcodmodel.c:422:33: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  422 |     fprintf(stdout, "pos 3: %f %\n", ave_3_error*100.0);
      |                                 ^~
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/othmodel.c
../src/evolmisc.c: In function ‘EvolCalculateNaiveTargetError’:
../src/evolmisc.c:127:43: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  127 |   printf("MAX_average error[L=%d] = %.2f %\n", L, max_error);
      |                                           ^~
../src/evolmisc.c:128:46: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  128 |   printf("ACT_average error[@t %.3f] = %.2f %\n\n", tfactor, act_error);
      |                                              ^~
../src/evolmisc.c: In function ‘EvolCalculateMutProbsTargetError’:
../src/evolmisc.c:177:42: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  177 |   printf("average error[@t %.3f] = %.2f %\n\n", pmutxy->time, error);
      |                                          ^~
../src/evolmisc.c: In function ‘EvolCalculateMut5ProbsTargetError’:
../src/evolmisc.c:235:42: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
  235 |   printf("average error[@t %.3f] = %.2f %\n\n", pmut5xy->time, error);
      |                                          ^~
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/othdp.c
../src/evolscorewithmodels.c: In function ‘score_global’:
../src/evolscorewithmodels.c:422:3: warning: implicit declaration of function ‘EvolScoreWithRNA’; did you mean ‘ScoreWithRNA’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  422 |   EvolScoreWithRNA(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, 0, win, emodel, dpd->oth, mx, sc->rna,
      |   ^~~~~~~~~~~~~~~~
      |   ScoreWithRNA
../src/evolmisc.c: In function ‘EvolConstructModels_phase1’:
../src/evolmisc.c:421:3: warning: implicit declaration of function ‘EvolCalMutRateFromRIBOUnpaired’; did you mean ‘EvolCalMutRateFromRIBOUnparied’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  421 |   EvolCalMutRateFromRIBOUnpaired (ribomat, 4, mutpxy_star,  &mutpxy_rna_unpaired_star,  targetfreq, change_background, pedantic, verbose);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |   EvolCalMutRateFromRIBOUnparied
../src/evolriboprob.c: In function ‘EvolCalculateRIBOTargetError’:
../src/evolscorewithmodels.c: In function ‘score_viterbi_diag’:
../src/evolscorewithmodels.c:494:3: warning: implicit declaration of function ‘EvolViterbiRNADiag’; did you mean ‘ViterbiRNADiag’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  494 |   EvolViterbiRNADiag(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, 0, win, emodel, dpd, mx, sc->rna,
      |   ^~~~~~~~~~~~~~~~~~
      |   ViterbiRNADiag
../src/evolriboprob.c:1191:47: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1191 |   printf("average RIBO error[@t %.3f] = %.2f %\n\n", riboprob->time, error);
      |                                               ^~
../src/evolmisc.c:425:3: warning: implicit declaration of function ‘EvolCalMut5RateFromRIBOUnpaired’; did you mean ‘EvolCalMut5RateFromRIBOUnparied’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  425 |   EvolCalMut5RateFromRIBOUnpaired(ribomat, 5, mutpxy_star, mut5pxy_star, mutpxy_rna_unpaired_star, &mut5pxy_rna_unpaired_star,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |   EvolCalMut5RateFromRIBOUnparied
../src/evolriboprob.c: In function ‘EvolCalculateNaivePairTargetError’:
../src/evolriboprob.c:1301:51: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1301 |   printf("Predicted_average L-error[L=%d] = %.2f %\n", L, predic_lerror);
      |                                                   ^~
../src/evolriboprob.c:1302:51: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1302 |   printf("ACTUAL_average L-error[@t %.3f] = %.2f %\n\n", pairprob->time, actual_lerror);
      |                                                   ^~
../src/evolriboprob.c:1304:51: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1304 |   printf("Predicted_average R-error[L=%d] = %.2f %\n", L, predic_rerror);
      |                                                   ^~
../src/evolriboprob.c:1305:51: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1305 |   printf("ACTUAL_average R-error[@t %.3f] = %.2f %\n\n", pairprob->time, actual_rerror);
      |                                                   ^~
../src/evolriboprob.c: In function ‘EvolCalculateRIBO5TargetError’:
../src/evolscorewithmodels.c: In function ‘score_forward_diag’:
../src/evolriboprob.c:1364:48: warning: unknown conversion type character ‘\x0a’ in format [-Wformat=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=]]
 1364 |   printf("average RIBO5 error[@t %.3f] = %.2f %\n\n", ribo5prob->time, error);
      |                                                ^~
../src/evolscorewithmodels.c:551:3: warning: implicit declaration of function ‘EvolForwardRNADiag’; did you mean ‘ForwardRNADiag’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  551 |   EvolForwardRNADiag(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, 0, win, emodel, dpd, mx, sc->rna, ardiag,
      |   ^~~~~~~~~~~~~~~~~~
      |   ForwardRNADiag
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/othdpscanfast.c
../src/evolmisc.c:427:3: warning: implicit declaration of function ‘EvolCalMut5RateLoopFromRIBOUnpaired’; did you mean ‘EvolCalMut5RateLoopFromRIBOUnparied’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  427 |   EvolCalMut5RateLoopFromRIBOUnpaired(ribomat, 5, mutpxy_star, mut5pxy_star, mutpxy_rna_unpaired_star, &mut5pxy_rna_loop_star,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |   EvolCalMut5RateLoopFromRIBOUnparied
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/othscorealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/posterior.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/qrnaversion.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/riboprob.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnacreatealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnadp.c
../src/misc.c: In function ‘ConstructTiedProbs’:
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnadpscanfast.c
../src/misc.c:738:17: warning: implicit declaration of function ‘DeltaPrimeFromDelta’ [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  738 |   indel2indel = DeltaPrimeFromDelta (indel);
      |                 ^~~~~~~~~~~~~~~~~~~
../src/evolscorewithmodelscanfast.c: In function ‘score_viterbi_diag_scan_fast’:
../src/evolscorewithmodelscanfast.c:307:15: warning: implicit declaration of function ‘EvolViterbiRNADiagScanFast’; did you mean ‘ViterbiRNADiagScanFast’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  307 |       rnasc = EvolViterbiRNADiagScanFast(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, L, win, j-dmax, (jmod-dmax<0)? jmod-dmax+win:jmod-dmax, l, lmax,
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~
      |               ViterbiRNADiagScanFast
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnaio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnamodel.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnaoutput.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnascorealign.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnascfg.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/rnascfgscanfast.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/scorewithmodels.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/scorewithmodelscanfast.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/seqio.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/trace.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/traceSCFG.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/tying.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/main.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/cfgbuild.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/eqrna.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/eqrna_sample.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid -c ../src/shuffle.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid02 -c ../src/nstack.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid02 -c ../src/rnamat.c
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -DASSERT  -I../squid02 -c ../src/rnamat_main.c
../src/rnamodel.c: In function ‘ConstructRNAModel_201’:
../src/rnamodel.c:240:13: warning: implicit declaration of function ‘DeltaPrimeFromDelta’ [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]
  240 |   gap2gap = DeltaPrimeFromDelta (gap);
      |             ^~~~~~~~~~~~~~~~~~~
../src/seqio.c: In function ‘StripDegeneracy’:
../src/seqio.c:2768:45: warning: ignoring return value of ‘realloc’ declared with attribute ‘warn_unused_result’ [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result]]
 2768 |   if (length_gap != 0) {*len -= length_gap; realloc(seq, sizeof(char) * (*len));}
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rnamat_main -L../squid02 rnamat_main.o globals.o nstack.o rnamat.o  -lsquid -lm 
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o main -L../squid main.o -lsquid -lm 
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o cfgbuild -L../squid cfgbuild.o cfgio.o cfgmodel.o cfgparse.o codcreatealign.o coddp.o coddpscanfast.o codmodel.o codon.o codscorealign.o er_math.o evd.o evolcodmodel.o evolemissions.o evolmisc.o evolothmodel.o evolnullmodel.o evolqrnaversion.o evolriboprob.o evolrnadp.o evolrnadpscanfast.o evolrnamodel.o evolrnascorealign.o evolscorewithmodels.o evolscorewithmodelscanfast.o evolve.o globals.o hexamer.o matrix.o misc.o nrnscfg.o nullmodel.o othcreatealign.o othmodel.o othdp.o othdpscanfast.o othscorealign.o posterior.o qrnaversion.o riboprob.o rnacreatealign.o rnadp.o rnadpscanfast.o rnaio.o rnamodel.o rnaoutput.o rnascorealign.o rnascfg.o rnascfgscanfast.o scorewithmodels.o scorewithmodelscanfast.o seqio.o trace.o traceSCFG.o tying.o -lsquid -lm 
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o eqrna -L../squid eqrna.o cfgio.o cfgmodel.o cfgparse.o codcreatealign.o coddp.o coddpscanfast.o codmodel.o codon.o codscorealign.o er_math.o evd.o evolcodmodel.o evolemissions.o evolmisc.o evolothmodel.o evolnullmodel.o evolqrnaversion.o evolriboprob.o evolrnadp.o evolrnadpscanfast.o evolrnamodel.o evolrnascorealign.o evolscorewithmodels.o evolscorewithmodelscanfast.o evolve.o globals.o hexamer.o matrix.o misc.o nrnscfg.o nullmodel.o othcreatealign.o othmodel.o othdp.o othdpscanfast.o othscorealign.o posterior.o qrnaversion.o riboprob.o rnacreatealign.o rnadp.o rnadpscanfast.o rnaio.o rnamodel.o rnaoutput.o rnascorealign.o rnascfg.o rnascfgscanfast.o scorewithmodels.o scorewithmodelscanfast.o seqio.o trace.o traceSCFG.o tying.o -lsquid -lm 
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o eqrna_sample -L../squid eqrna_sample.o cfgio.o cfgmodel.o cfgparse.o codcreatealign.o coddp.o coddpscanfast.o codmodel.o codon.o codscorealign.o er_math.o evd.o evolcodmodel.o evolemissions.o evolmisc.o evolothmodel.o evolnullmodel.o evolqrnaversion.o evolriboprob.o evolrnadp.o evolrnadpscanfast.o evolrnamodel.o evolrnascorealign.o evolscorewithmodels.o evolscorewithmodelscanfast.o evolve.o globals.o hexamer.o matrix.o misc.o nrnscfg.o nullmodel.o othcreatealign.o othmodel.o othdp.o othdpscanfast.o othscorealign.o posterior.o qrnaversion.o riboprob.o rnacreatealign.o rnadp.o rnadpscanfast.o rnaio.o rnamodel.o rnaoutput.o rnascorealign.o rnascfg.o rnascfgscanfast.o scorewithmodels.o scorewithmodelscanfast.o seqio.o trace.o traceSCFG.o tying.o -lsquid -lm 
x86_64-pc-linux-gnu-gcc -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o shuffle -L../squid shuffle.o cfgio.o cfgmodel.o cfgparse.o codcreatealign.o coddp.o coddpscanfast.o codmodel.o codon.o codscorealign.o er_math.o evd.o evolcodmodel.o evolemissions.o evolmisc.o evolothmodel.o evolnullmodel.o evolqrnaversion.o evolriboprob.o evolrnadp.o evolrnadpscanfast.o evolrnamodel.o evolrnascorealign.o evolscorewithmodels.o evolscorewithmodelscanfast.o evolve.o globals.o hexamer.o matrix.o misc.o nrnscfg.o nullmodel.o othcreatealign.o othmodel.o othdp.o othdpscanfast.o othscorealign.o posterior.o qrnaversion.o riboprob.o rnacreatealign.o rnadp.o rnadpscanfast.o rnaio.o rnamodel.o rnaoutput.o rnascorealign.o rnascfg.o rnascfgscanfast.o scorewithmodels.o scorewithmodelscanfast.o seqio.o trace.o traceSCFG.o tying.o -lsquid -lm 
../src/evolscorewithmodelscanfast.c:307:15: error: type of ‘EvolViterbiRNADiagScanFast’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  307 |       rnasc = EvolViterbiRNADiagScanFast(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, L, win, j-dmax, (jmod-dmax<0)? jmod-dmax+win:jmod-dmax, l, lmax,
      |               ^
../src/evolrnadpscanfast.c:71:1: note: return value type mismatch
   71 | EvolViterbiRNADiagScanFast(FILE *ofp, SQINFO sqinfoX, int *seqX, SQINFO sqinfoY, int *seqY, char *gss,
      | ^
../src/evolrnadpscanfast.c:71:1: note: type ‘double’ should match type ‘int’
../src/evolrnadpscanfast.c:71:1: note: ‘EvolViterbiRNADiagScanFast’ was previously declared here
../src/evolrnadpscanfast.c:71:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/misc.c:738:17: error: type of ‘DeltaPrimeFromDelta’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  738 |   indel2indel = DeltaPrimeFromDelta (indel);
      |                 ^
../src/evolemissions.c:123:1: note: return value type mismatch
  123 | DeltaPrimeFromDelta (double indel)
      | ^
../src/evolemissions.c:123:1: note: type ‘double’ should match type ‘int’
../src/evolemissions.c:123:1: note: ‘DeltaPrimeFromDelta’ was previously declared here
../src/evolemissions.c:123:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/evolscorewithmodelscanfast.c:307:15: error: type of ‘EvolViterbiRNADiagScanFast’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  307 |       rnasc = EvolViterbiRNADiagScanFast(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, L, win, j-dmax, (jmod-dmax<0)? jmod-dmax+win:jmod-dmax, l, lmax,
      |               ^
../src/evolrnadpscanfast.c:71:1: note: return value type mismatch
   71 | EvolViterbiRNADiagScanFast(FILE *ofp, SQINFO sqinfoX, int *seqX, SQINFO sqinfoY, int *seqY, char *gss,
      | ^
../src/evolrnadpscanfast.c:71:1: note: type ‘double’ should match type ‘int’
../src/evolrnadpscanfast.c:71:1: note: ‘EvolViterbiRNADiagScanFast’ was previously declared here
../src/evolrnadpscanfast.c:71:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/misc.c:738:17: error: type of ‘DeltaPrimeFromDelta’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  738 |   indel2indel = DeltaPrimeFromDelta (indel);
      |                 ^
../src/evolemissions.c:123:1: note: return value type mismatch
  123 | DeltaPrimeFromDelta (double indel)
      | ^
../src/evolemissions.c:123:1: note: type ‘double’ should match type ‘int’
../src/evolemissions.c:123:1: note: ‘DeltaPrimeFromDelta’ was previously declared here
../src/evolemissions.c:123:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/evolscorewithmodelscanfast.c:307:15: error: type of ‘EvolViterbiRNADiagScanFast’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  307 |       rnasc = EvolViterbiRNADiagScanFast(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, L, win, j-dmax, (jmod-dmax<0)? jmod-dmax+win:jmod-dmax, l, lmax,
      |               ^
../src/evolrnadpscanfast.c:71:1: note: return value type mismatch
   71 | EvolViterbiRNADiagScanFast(FILE *ofp, SQINFO sqinfoX, int *seqX, SQINFO sqinfoY, int *seqY, char *gss,
      | ^
../src/evolrnadpscanfast.c:71:1: note: type ‘double’ should match type ‘int’
../src/evolrnadpscanfast.c:71:1: note: ‘EvolViterbiRNADiagScanFast’ was previously declared here
../src/evolrnadpscanfast.c:71:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/misc.c:738:17: error: type of ‘DeltaPrimeFromDelta’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  738 |   indel2indel = DeltaPrimeFromDelta (indel);
      |                 ^
../src/evolemissions.c:123:1: note: return value type mismatch
  123 | DeltaPrimeFromDelta (double indel)
      | ^
../src/evolemissions.c:123:1: note: type ‘double’ should match type ‘int’
../src/evolemissions.c:123:1: note: ‘DeltaPrimeFromDelta’ was previously declared here
../src/evolemissions.c:123:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/evolscorewithmodelscanfast.c:307:15: error: type of ‘EvolViterbiRNADiagScanFast’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  307 |       rnasc = EvolViterbiRNADiagScanFast(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, L, win, j-dmax, (jmod-dmax<0)? jmod-dmax+win:jmod-dmax, l, lmax,
      |               ^
../src/evolrnadpscanfast.c:71:1: note: return value type mismatch
   71 | EvolViterbiRNADiagScanFast(FILE *ofp, SQINFO sqinfoX, int *seqX, SQINFO sqinfoY, int *seqY, char *gss,
      | ^
../src/evolrnadpscanfast.c:71:1: note: type ‘double’ should match type ‘int’
../src/evolrnadpscanfast.c:71:1: note: ‘EvolViterbiRNADiagScanFast’ was previously declared here
../src/evolrnadpscanfast.c:71:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
../src/misc.c:738:17: error: type of ‘DeltaPrimeFromDelta’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
  738 |   indel2indel = DeltaPrimeFromDelta (indel);
      |                 ^
../src/evolemissions.c:123:1: note: return value type mismatch
  123 | DeltaPrimeFromDelta (double indel)
      | ^
../src/evolemissions.c:123:1: note: type ‘double’ should match type ‘int’
../src/evolemissions.c:123:1: note: ‘DeltaPrimeFromDelta’ was previously declared here
../src/evolemissions.c:123:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
lto1: some warnings being treated as errors
lto1: some warnings being treated as errors
lto-wrapper: fatal error: x86_64-pc-linux-gnu-gcc returned 1 exit status
compilation terminated.
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
lto-wrapper: fatal error: x86_64-pc-linux-gnu-gcc returned 1 exit status
compilation terminated.
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
collect2: error: ld returned 1 exit status
make: *** [Makefile:140: shuffle] Error 1
make: *** Waiting for unfinished jobs....
collect2: error: ld returned 1 exit status
make: *** [Makefile:134: cfgbuild] Error 1
lto1: some warnings being treated as errors
lto-wrapper: fatal error: x86_64-pc-linux-gnu-gcc returned 1 exit status
compilation terminated.
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
collect2: error: ld returned 1 exit status
make: *** [Makefile:138: eqrna_sample] Error 1
lto1: some warnings being treated as errors
lto-wrapper: fatal error: x86_64-pc-linux-gnu-gcc returned 1 exit status
compilation terminated.
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
collect2: error: ld returned 1 exit status
make: *** [Makefile:136: eqrna] Error 1
make: Leaving directory '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c/src'
 * ERROR: sci-biology/qrna-2.0.3c-r3::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/qrna-2.0.3c-r3::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/qrna-2.0.3c-r3::gentoo'`.
 * The complete build log is located at '/var/log/emerge-log/build/sci-biology/qrna-2.0.3c-r3:20240320-210110.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c'
 * S: '/var/tmp/portage/sci-biology/qrna-2.0.3c-r3/work/qrna-2.0.3c'