full build log

vtk-5.10.1-build.log (text/plain), 20.75 KB, created by John (EBo) David on 2013-02-15 06:23:31 UTC

[32;01m * [39;49;00mPackage:    sci-libs/vtk-5.10.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail],[e-mail]
[32;01m * [39;49;00mUSE:        R X abi_x86_64 amd64 boost elibc_glibc ffmpeg java kernel_linux mpi multilib postgres python qt4 threads tk userland_GNU
[32;01m * [39;49;00mFEATURES:   ccache distcc preserve-libs sandbox

 [32;01m*[0m Please note that the VTK build occasionally fails when
 [32;01m*[0m using parallel make. Hence, if you experience a build
 [32;01m*[0m failure please try re-emerging with MAKEOPTS="-j1" first.

 [32;01m*[0m Using: icedtea-bin-6
>>> Unpacking source...
>>> Unpacking vtk-5.10.1.tar.gz to /var/tmp/portage/sci-libs/vtk-5.10.1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/vtk-5.10.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 ...
 [32;01m*[0m Applying vtk-5.6.0-cg-path.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.2.0-tcl-install.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.8.0-R.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.6.0-odbc.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.6.1-ffmpeg.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.6.1-libav-0.8.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.10.1-tcl8.6.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying vtk-5.10.1-ffmpeg-1.patch ...
[A[147C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build"
cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -Wno-dev -DVTK_INSTALL_PACKAGE_DIR=/lib64/vtk-5.10 -DCMAKE_SKIP_RPATH=YES -DVTK_DIR=/var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 -DVTK_INSTALL_LIB_DIR=/lib64/ -DVTK_DATA_ROOT:PATH=/usr/share/vtk/data -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_SHARED_LIBS=ON -DVTK_USE_SYSTEM_EXPAT=ON -DVTK_USE_SYSTEM_FREETYPE=ON -DVTK_USE_SYSTEM_JPEG=ON -DVTK_USE_SYSTEM_LIBXML2=ON -DVTK_USE_SYSTEM_PNG=ON -DVTK_USE_SYSTEM_TIFF=ON -DVTK_USE_SYSTEM_ZLIB=ON -DVTK_USE_SYSTEM_HDF5=ON -DHDF5_LIBRARY=/usr/lib64 -DHDF5_INCLUDE_DIRS=/usr/include -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DVTK_USE_HYBRID=ON -DVTK_USE_GL2PS=ON -DVTK_USE_RENDERING=ON -DVTK_USE_BOOST=ON -DVTK_USE_CG_SHADERS=OFF -DDOCUMENTATION_HTML_HELP=OFF -DBUILD_DOCUMENTATION=OFF -DVTK_USE_JAVA=ON -DVTK_USE_MPI=ON -DVTK_USE_MYSQL=OFF -DVTK_USE_PATENTED=OFF -DVTK_USE_POSTGRES=ON -DVTK_USE_ODBC=OFF -DVTK_USE_QT=ON -DVTK_USE_OGGTHEORA_ENCODER=OFF -DVTK_USE_FFMPEG_ENCODER=ON -DVTK_USE_TK=ON -DVTK_USE_PARALLEL=ON -DVTK_USE_NVCONTROL=OFF -DVTK_USE_X=ON -DVTK_USE_GUISUPPORT=ON -DVTK_USE_GNU_R=ON -DVTK_USE_CHEMISTRY=OFF -DVTK_WRAP_TCL=ON -DVTK_WRAP_TK=ON -DVTK_TCL_INCLUDE_DIR=/usr/include -DVTK_TCL_LIBRARY=/usr/lib64 -DVTK_TK_INCLUDE_DIR=/usr/include -DVTK_TK_LIBRARY=/usr/lib64 -DVTK_WRAP_JAVA=ON -DJAVA_AWT_INCLUDE_PATH=/opt/icedtea-bin-6.1.11.5/include -DJAVA_INCLUDE_PATH:PATH=/opt/icedtea-bin-6.1.11.5/include -DJAVA_INCLUDE_PATH2:PATH=/opt/icedtea-bin-6.1.11.5/include/linux -DJAVA_AWT_LIBRARY=/opt/icedtea-bin-6.1.11.5/jre/lib/amd64/libjawt.so -DPYTHON_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_WRAP_PYTHON=ON -DVTK_WRAP_PYTHON_SIP=ON -DSIP_PYQT_DIR=/usr/share/sip -DSIP_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_PYTHON_INCLUDE_DIR=/usr/include/python2.7 -DVTK_PYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_PYTHON_SETUP_ARGS:STRING=--root=/var/tmp/portage/sci-libs/vtk-5.10.1/image/ -DVTK_USE_GUISUPPORT=ON -DVTK_USE_QVTK=ON -DVTK_USE_QVTK_OPENGL=ON -DVTK_USE_QVTK_QTOPENGL=ON -DQT_WRAP_CPP=ON -DQT_WRAP_UI=ON -DVTK_INSTALL_QT_DIR=/lib64/qt4/plugins/vtk -DDESIRED_QT_VERSION=4 -DQT_MOC_EXECUTABLE=/usr/bin/moc -DQT_UIC_EXECUTABLE=/usr/bin/uic -DQT_INCLUDE_DIR=/usr/include/qt4 -DQT_QMAKE_EXECUTABLE=/usr/bin/qmake -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_rules.cmake  /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 4.6.3
-- The CXX compiler identification is GNU 4.6.3
-- Check for working C compiler: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Performing Test Support for 64 bit file systems
-- Performing Test Support for 64 bit file systems - Success
-- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON
-- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON - Success
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found.
-- Found Qt4: /usr/bin/qmake (found suitable version "4.8.4", required is "4.5.0") 
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib64/libX11.so
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of int
-- Check size of int - done
-- Check size of long
-- Check size of long - done
-- Check size of void*
-- Check size of void* - done
-- Check size of char
-- Check size of char - done
-- Check size of short
-- Check size of short - done
-- Check size of float
-- Check size of float - done
-- Check size of double
-- Check size of double - done
-- Looking for include file limits.h
-- Looking for include file limits.h - found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for include files sys/types.h, sys/prctl.h
-- Looking for include files sys/types.h, sys/prctl.h - found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for pthread_create
-- Looking for pthread_create - not found.
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for C++ include iostream
-- Looking for C++ include iostream - found
-- Check for STD namespace
-- Check for STD namespace - found
-- Check for ANSI scope
-- Check for ANSI scope - found
-- Check for sstream
-- Check for sstream - found
-- Check size of long long
-- Check size of long long - done
-- Check size of __int64
-- Check size of __int64 - failed
-- Check size of uintptr_t
-- Check size of uintptr_t - done
-- Checking support for C++ type bool
-- Checking support for C++ type bool -- yes
-- Checking signedness of char
-- Checking signedness of char -- signed
-- Looking for getsockname in socket
-- Looking for getsockname in socket - not found
-- Checking for getsockname with socklen_t
-- Checking for getsockname with socklen_t -- yes
-- Looking for SO_REUSEADDR
-- Looking for SO_REUSEADDR - found
-- Checking support for full template specialization syntax
-- Checking support for full template specialization syntax -- yes
-- Checking support for C++ explicit template instantiation
-- Checking support for C++ explicit template instantiation -- yes
-- Checking for builtin __sync_add_and_fetch
-- Checking for builtin __sync_add_and_fetch -- success
-- Looking for C++ include iosfwd
-- Looking for C++ include iosfwd - found
-- Looking for C++ include iostream.h
-- Looking for C++ include iostream.h - not found
-- Checking ANSI streams end-of-file bug level
-- Checking ANSI streams end-of-file bug level - 1
-- Checking if ostream supports long long
-- Checking if ostream supports long long -- yes
-- Checking if istream supports long long
-- Checking if istream supports long long -- yes
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") 
-- Found HDF5: debug;/usr/lib64/libhdf5_hl.so;debug;/usr/lib64/libhdf5.so;debug;/usr/lib64/libsz.so;debug;/usr/lib64/libz.so;debug;/usr/lib64/librt.so;debug;/usr/lib64/libm.so;optimized;/usr/lib64/libhdf5_hl.so;optimized;/usr/lib64/libhdf5.so;optimized;/usr/lib64/libsz.so;optimized;/usr/lib64/libz.so;optimized;/usr/lib64/librt.so;optimized;/usr/lib64/libm.so  
-- Found JPEG: /usr/lib64/libjpeg.so  
-- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") 
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.0.2") 
-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.1.0") 
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.8.0") 
-- Found OpenGL: /usr/lib64/libGL.so  
-- Found MPI_C: /usr/lib64/libmpi.so;/usr/lib64/libopen-rte.so;/usr/lib64/libopen-pal.so;/usr/lib64/libdl.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so  
-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so;/usr/lib64/libopen-rte.so;/usr/lib64/libopen-pal.so;/usr/lib64/libdl.so;/usr/lib64/libnsl.so;/usr/lib64/libutil.so;/usr/lib64/libm.so;/usr/lib64/libdl.so  
-- Found PythonLibs: /usr/lib64/libpython2.7.so  
-- Found Tclsh: /usr/bin/tclsh (found version "8.5") 
-- Found TCL: /usr/lib64/libtcl.so  
-- Found TCLTK: /usr/lib64/libtcl.so  
-- Found TK: /usr/lib64/libtk.so  
-- Found Java: /opt/icedtea-bin-6.1.11.5/bin/java (found version "1.6.0.24") 
-- Found JNI: /opt/icedtea-bin-6.1.11.5/jre/lib/amd64/libjawt.so  
-- Boost version: 1.49.0
-- Boost version: 1.49.0
-- Checking whether header cstdio is available
-- Checking whether header cstdio is available - yes
-- Checking for Large File Support
-- Checking for Large File Support - yes
-- Checking whether STL classes are in std namespace
-- Checking whether STL classes are in std namespace - yes
-- Checking whether ANSI stream headers are available
-- Checking whether ANSI stream headers are available - yes
-- Checking whether ANSI streams are in std namespace
-- Checking whether ANSI streams are in std namespace - yes
-- Checking whether ANSI string stream is available
-- Checking whether ANSI string stream is available - yes
-- Checking whether header cstddef is available
-- Checking whether header cstddef is available - yes
-- Checking whether stl string has operator!= for char*
-- Checking whether stl string has operator!= for char* - yes
-- Checking whether stl has iterator_traits
-- Checking whether stl has iterator_traits - yes
-- Checking whether stl has standard template allocator
-- Checking whether stl has standard template allocator - yes
-- Checking for rebind member of stl allocator
-- Checking for rebind member of stl allocator - yes
-- Checking for non-standard argument to stl allocator<>::max_size
-- Checking for non-standard argument to stl allocator<>::max_size - no
-- Checking whether stl containers support allocator objects.
-- Checking whether stl containers support allocator objects. - yes
-- Checking whether ios has binary openmode
-- Checking whether ios has binary openmode - yes
-- Checking whether "<>" is needed for template friends
-- Checking whether "<>" is needed for template friends - yes
-- Checking for member template support
-- Checking for member template support - yes
-- Checking for standard template specialization syntax
-- Checking for standard template specialization syntax - yes
-- Checking whether argument dependent lookup is supported
-- Checking whether argument dependent lookup is supported - yes
-- Checking whether struct stat has st_mtim member
-- Checking whether struct stat has st_mtim member - yes
-- Checking for C type size macros
-- Checking for C type size macros - compiled
-- Check size of char
-- Check size of char - done
-- Check size of __int64
-- Check size of __int64 - failed
-- Checking whether char is signed
-- Checking whether char is signed - yes
-- Checking whether C compiler has ptrdiff_t in stddef.h
-- Checking whether C compiler has ptrdiff_t in stddef.h - yes
-- Checking whether C compiler has ssize_t in unistd.h
-- Checking whether C compiler has ssize_t in unistd.h - yes
-- Looking for csin
-- Looking for csin - found
-- Looking for atanh
-- Looking for atanh - found
-- Looking for 4 include files stdlib.h, ..., float.h
-- Looking for 4 include files stdlib.h, ..., float.h - found
-- Looking for include file alloca.h
-- Looking for include file alloca.h - found
-- Looking for include files alloca.h, stdlib.h
-- Looking for include files alloca.h, stdlib.h - found
-- Looking for 4 include files alloca.h, ..., sys/stat.h
-- Looking for 4 include files alloca.h, ..., sys/stat.h - found
-- Looking for 5 include files alloca.h, ..., unistd.h
-- Looking for 5 include files alloca.h, ..., unistd.h - found
-- Looking for 6 include files alloca.h, ..., fcntl.h
-- Looking for 6 include files alloca.h, ..., fcntl.h - found
-- Looking for 7 include files alloca.h, ..., stdio.h
-- Looking for 7 include files alloca.h, ..., stdio.h - found
-- Looking for 8 include files alloca.h, ..., string.h
-- Looking for 8 include files alloca.h, ..., string.h - found
-- Looking for 11 include files alloca.h, ..., inttypes.h
-- Looking for 11 include files alloca.h, ..., inttypes.h - found
-- Looking for 12 include files alloca.h, ..., stdbool.h
-- Looking for 12 include files alloca.h, ..., stdbool.h - found
-- Looking for alloca
-- Looking for alloca - found
-- Looking for strerror
-- Looking for strerror - found
-- Check size of size_t
-- Check size of size_t - done
-- Check size of ssize_t
-- Check size of ssize_t - done
-- Check size of ptrdiff_t
-- Check size of ptrdiff_t - done
-- Check size of off_t
-- Check size of off_t - done
-- Check size of double
-- Check size of double - done
-- Check size of float
-- Check size of float - done
-- Check size of int
-- Check size of int - done
-- Check size of long
-- Check size of long - done
-- Check size of short
-- Check size of short - done
-- Check size of uchar
-- Check size of uchar - failed
-- Check size of _Bool
-- Check size of _Bool - done
-- Performing NetCDF Test HAVE_ST_BLKSIZE
-- Performing NetCDF Test HAVE_ST_BLKSIZE - Success
-- Performing NetCDF Test HAVE_FTRUNCATE
-- Performing NetCDF Test HAVE_FTRUNCATE - Success
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for float.h
-- Looking for float.h - found
-- Looking for isnan
-- Looking for isnan - not found.
-- Looking for _isnan
-- Looking for _isnan - not found.
-- Looking for isinf
-- Looking for isinf - not found.
-- Looking for _isinf
-- Looking for _isinf - not found
-- Looking for fenv.h
-- Looking for fenv.h - found
-- Looking for feenableexcept
-- Looking for feenableexcept - found
-- Checking if FFMPEG uses old style header files - no
-- Checking if FFMPEG has img_convert - not found
-- Checking if FFMPEG uses old API for url_fclose - not found
-- Checking if FFMPEG has avformat_alloc_context - found
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_1
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_1 - Success
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_2
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_2 - Success
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_3
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_3 - Success
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_4
-- Performing Test GLX_DEFINES_MACRO_GLX_VERSION_1_4 - Success
-- Performing Test GLX_DEFINES_MACRO_GLX_ARB_get_proc_address
-- Performing Test GLX_DEFINES_MACRO_GLX_ARB_get_proc_address - Success
-- Performing Test GLX_INCLUDES_GLXEXT
-- Performing Test GLX_INCLUDES_GLXEXT - Success
-- Performing Test GLX_DEFINES_TYPE_GLXextFuncPtr
-- Performing Test GLX_DEFINES_TYPE_GLXextFuncPtr - Success
-- Performing Test GLX_DEFINES_TYPE_GLXextFuncPtr_AS_EMPTY
-- Performing Test GLX_DEFINES_TYPE_GLXextFuncPtr_AS_EMPTY - Failed
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddressARB
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddressARB - Success
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddress
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddress - Success
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddressARB_AS_EMPTY
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddressARB_AS_EMPTY - Failed
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddress_AS_EMPTY
-- Performing Test GLX_DECLARES_FUNCTION_glXGetProcAddress_AS_EMPTY - Failed
-- Performing Test GLX_DEFINES_TYPE_GLXFBConfig
-- Performing Test GLX_DEFINES_TYPE_GLXFBConfig - Success
-- GLX_DEFINES_MACRO_GLX_VERSION_1_1=1
-- GLX_DEFINES_MACRO_GLX_VERSION_1_2=1
-- GLX_DEFINES_MACRO_GLX_VERSION_1_3=1
-- GLX_DEFINES_MACRO_GLX_VERSION_1_4=1
-- GLX_DEFINES_MACRO_GLX_ARB_get_proc_address=1
-- GLX_INCLUDES_GLXEXT=1
-- GLX_USES_MACRO_GLX_GLXEXT_LEGACY=TRUE
-- GLX_DEFINES_TYPE_GLXextFuncPtr=1
-- GLX_DEFINES_TYPE_GLXextFuncPtr_AS_EMPTY=
-- GLX_DECLARES_FUNCTION_glXGetProcAddressARB=1
-- GLX_DECLARES_FUNCTION_glXGetProcAddress=1
-- GLX_DECLARES_FUNCTION_glXGetProcAddressARB_AS_EMPTY=
-- GLX_DECLARES_FUNCTION_glXGetProcAddress_AS_EMPTY=
-- GLX_DEFINES_TYPE_GLXFBConfig=1
-- Looking for glXGetProcAddressARB
-- Looking for glXGetProcAddressARB - found
-- Looking for glXGetProcAddressARB in GL/glx.h
-- Looking for glXGetProcAddressARB in GL/glx.h - TRUE
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -march=native -O2 -pipe -ggdb  
C++             -march=native -O2 -pipe -ggdb   -Wno-deprecated
Linker flags:
Executable       -Wl,-O1 -Wl,--as-needed 
Module           -Wl,-O1 -Wl,--as-needed 
Shared           -Wl,-O1 -Wl,--as-needed 

CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
R_LIBRARY_BASE
    linked by target "vtkGraphics" in directory /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1/Graphics
    linked by target "vtkGraphics" in directory /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1/Graphics

-- Configuring incomplete, errors occurred!
 [31;01m*[0m ERROR: sci-libs/vtk-5.10.1 failed (configure phase):
 [31;01m*[0m   cmake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   93:  Called src_configure
 [31;01m*[0m   environment, line 7361:  Called cmake-utils_src_configure
 [31;01m*[0m   environment, line 1501:  Called _execute_optionaly 'src_configure'
 [31;01m*[0m   environment, line  519:  Called enable_cmake-utils_src_configure
 [31;01m*[0m   environment, line 1977:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/vtk-5.10.1'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/vtk-5.10.1'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=icedtea-bin-6  CLASSPATH="" JAVA_HOME="/opt/icedtea-bin-6.1.11.5"
JAVACFLAGS="-source 1.5 -target 1.5" COMPILER=""
and of course, the output of emerge --info
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/vtk-5.10.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/vtk-5.10.1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1'