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Gentoo's Bugzilla – Attachment 249544 Details for
Bug 339706
sci-libs/ccp4-libs _FORTIFY_SOURCE indicates presence of overflow
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Build log
ccp4-libs-6.1.3-r3:20101004-021641.log (text/plain), 270.55 KB, created by
Diego Elio Pettenò (RETIRED)
on 2010-10-04 12:53:44 UTC
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2010-10-04 12:53:44 UTC
Size:
270.55 KB
patch
obsolete
> * Package: sci-libs/ccp4-libs-6.1.3-r3 > * Repository: gentoo > * Maintainer: jlec@gentoo.org sci-chemistry@gentoo.org > * USE: elibc_glibc kernel_linux test userland_GNU x86 > * You need one of these Fortran Compilers: g77 gfortran ifc > * Installed are: gfortran ifort >>>> Unpacking source... >>>> Unpacking ccp4-6.1.3-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work > * Applying patches for selected FORTRAN compiler: gfortran >>>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work >>>> Preparing source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... > * Applying upstream patches ... > * Done. > > * Applying Gentoo patches ... > * 6.1.3-dont-make-dirs-in-configure.patch ... > [ ok ] > * 6.0.2-ppc-double-define-gerror.patch ... > [ ok ] > * 6.1.3-ccif-shared.patch ... > [ ok ] > * 6.1.3-dont-build-mmdb.patch ... > [ ok ] > * 6.1.3-unbundle-libs.patch ... > [ ok ] > * 6.1.3-noinstall.patch ... > [ ok ] > * Done. > > * Using GNU config files from /usr/share/gnuconfig > * Updating x-windows/xdl_view/src/config.sub > [ ok ] > * Updating x-windows/Mosflm/config.sub > [ ok ] > * Updating x-windows/Mosflm/jpg/config.sub > [ ok ] > * Updating x-windows/Mosflm/cbf/config.sub > [ ok ] > * Updating x-windows/Rotgen/config.sub > [ ok ] > * Updating x-windows/libjwc/libjwc_f/config.sub > [ ok ] > * Updating x-windows/libjwc/libjwc_c/config.sub > [ ok ] > * Updating lib/fftw/config.sub > [ ok ] > * Updating lib/DiffractionImage/config.sub > [ ok ] > * Updating lib/rxdispencer/config.sub > [ ok ] > * Updating lib/ccif/config.sub > [ ok ] > * Updating lib/clipper/config.sub > [ ok ] > * Updating lib/ssm/config.sub > [ ok ] > * Updating src/rapper/gc7.0/config.sub > [ ok ] > * Updating src/rapper/gc7.0/libatomic_ops-1.2/config.sub > [ ok ] > * Updating src/rapper/config.sub > [ ok ] > * Updating src/rapper/libxml2/config.sub > [ ok ] > * Updating src/clipper_progs/config.sub > [ ok ] > * Updating src/pointless/config.sub > [ ok ] > * Updating src/pisa/config.sub > [ ok ] > * Updating x-windows/xdl_view/src/config.guess > [ ok ] > * Updating x-windows/Mosflm/jpg/config.guess > [ ok ] > * Updating x-windows/Mosflm/config.guess > [ ok ] > * Updating x-windows/Mosflm/cbf/config.guess > [ ok ] > * Updating x-windows/Rotgen/config.guess > [ ok ] > * Updating x-windows/libjwc/libjwc_f/config.guess > [ ok ] > * Updating x-windows/libjwc/libjwc_c/config.guess > [ ok ] > * Updating lib/fftw/config.guess > [ ok ] > * Updating lib/DiffractionImage/config.guess > [ ok ] > * Updating lib/rxdispencer/config.guess > [ ok ] > * Updating lib/ccif/config.guess > [ ok ] > * Updating lib/clipper/config.guess > [ ok ] > * Updating lib/ssm/config.guess > [ ok ] > * Updating src/rapper/gc7.0/libatomic_ops-1.2/config.guess > [ ok ] > * Updating src/rapper/gc7.0/config.guess > [ ok ] > * Updating src/rapper/config.guess > [ ok ] > * Updating src/rapper/libxml2/config.guess > [ ok ] > * Updating src/clipper_progs/config.guess > [ ok ] > * Updating src/pointless/config.guess > [ ok ] > * Updating src/pisa/config.guess > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... >with_fftw='/usr' >srcdir bindir libdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 /usr/libexec/ccp4/bin/ /usr/lib >OK, setting up for a system type of `linux'... > >! onlylibs build requested >! >! Only the libraries will be configured and built. >! Configuration of x-windows programs, phaser and mapslicer >! command library have been implicitly disabled. >! (Some messages below regarding re-enabling these options >! are likely to be misleading.) > >! Using gnu fortran compiler. If you have an old fortran compiler, you may be better >! off using f2c, see --with-f2c option. > >! The x-windows programs will not be installed. >! If you want the x-windows programs to be installed re-run >! configure with the --enable-x flag. > > The CCIF library will be built and installed. > This has been tested on the most common systems, but if > you have problems, use the --disable-ccif flag. > > Installation of the CCTBX library has been suppressed. > Some functionality will be lost. > > Installation of Phaser has been suppressed. > > The LAPACK linear algebra package will be included in the installation. > Configure will search for existing LAPACK and BLAS libraries on > on your system - if a version of LAPACK is not found then the NetLib > version will be built for you automatically. > If you want NetLib LAPACK and BLAS to be used regardless of > system libraries then rerun configure using --with-netlib-lapack > > To disable inclusion of LAPACK, use the --disable-lapack flag > (This is not recommended as some programs will fail to build) > > Building of the CCP4i MapSlicer command library has been suppressed. > As a result you will not be able to use the MapSlicer viewer. >! You have specified a non-default Fortran compiler (gfortran). > This probably only makes sense if you have made the appropriate > changes to the Fortran-C interface routines. > >testing linux ABI using: i686-pc-linux-gnu-gcc >$ 32-bit > >Testing Fortran90 support. >Fortran90 support confirmed (needed for latest Refmac and Molrep) >checking for ctime... > yes > > Testing command for running m4 (m4 -D_gfort=1) ... ok > >Running separate configure for CCIF library. > >Updating modification times for configuration files >Please wait... >...done. >configure: loading cache /tmp/22437.cache_file > > > CCCCCC CCCCCC IIII FFFFFFFFFF > CCCCCCCCCC CCCCCCCCCC IIII FFFFFFFFFF > CC C CC C II FF > CC CC II FF > CC CC II FFFFF > CC CC II FFFFF > CC CC II FF > CC C CC C II FF > CCCCCCCCCC CCCCCCCCC IIII FF > CCCCCC CCCCC IIII FF > ======================================================= > > Fortran programmers' tools for mmCIF > >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for function prototypes... yes >checking for ranlib... ranlib >checking for gawk... gawk >checking for nm... /usr/bin/nm >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking signal.h usability... yes >checking signal.h presence... yes >checking for signal.h... yes >checking time.h usability... yes >checking time.h presence... yes >checking for time.h... yes >checking standards.h usability... no >checking standards.h presence... no >checking for standards.h... no >checking assert.h usability... yes >checking assert.h presence... yes >checking for assert.h... yes >checking for unistd.h... checking for unistd.h... (cached) yes >yes >checking for an ANSI C-conforming const... yes >------------------------------------------------- > Setting up system-dependent stuff >------------------------------------------------- > > >checking for standards.h... (cached) no >checking for working non-fixed mmap... yes >checking whether strdup declared in string.h... yes >------------------------------------------------- > Regular expression package stuff >------------------------------------------------- >checking regex.h usability... yes >checking regex.h presence... yes >checking for regex.h... yes >checking out regular expression package... ok > >------------------------------------------------- >*** Configuring CCIF build for shared library *** >------------------------------------------------- > >------------------------------------------------- > Checking for certain archaic features >------------------------------------------------- > >checking whether we need to define strerror... no >checking for old-style realloc... no >checking for old BSD sprintf... no > >configure: updating cache /tmp/22437.cache_file >configure: creating ./config.status >config.status: creating shlib.csh >config.status: creating shlib.sh >config.status: creating Makefile > >Returning to main configure. > > >********* BLAS AND LAPACK CONFIGURATION *********** > >Warning: this option has not been extensively tested! >Please report problems to ccp4@ccp4.ac.uk > >Guessing names for native/vendor LAPACK and/or BLAS libraries >on this system >Possible LAPACK library names for this system: > liblapack > >Searching for libraries with LAPACK and BLAS: >...nothing in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib >...nothing in /lib >...found LAPACK library: /usr/lib/liblapack.a > Testing: try to link library against test program >gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlink testlink.f -L/usr/lib -llapack >Link ok - using liblapack from /usr/lib > > * Checking whether we need a separate BLAS library * > Testing: try linking library against test program >gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o testlsame lsametst.f -L/usr/lib -llapack >Test program okay - additional separate BLAS not required > Test C linking for lapack library >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -o testlink testlink.c -L/usr/lib -llapack >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp/ccEaRP8A.o: In function `main': >testlink.c:(.text+0x9c): undefined reference to `dsyev' >collect2: ld returned 1 exit status > >Linking in LAPACK/BLAS using XLAPACK_LIB="-L/usr/lib -llapack" > >***** BLAS AND LAPACK CONFIGURATION FINISHED ******* > >********* DIFFRACTION IMAGE LIBRARY CONFIGURATION *********** > >Updating modification times for configuration files >Please wait... >...done. > >configure --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-tcl-module --with-pic >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for style of include used by make... GNU >checking for gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognize dependent libraries... pass_all >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran accepts -g... yes >checking the maximum length of command line arguments... 1572864 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for ar... ar >checking for ranlib... ranlib >checking for strip... strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for gfortran option to produce PIC... -fPIC >checking if gfortran PIC flag -fPIC works... yes >checking if gfortran static flag -static works... yes >checking if gfortran supports -c -o file.o... yes >checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether we are using the GNU C++ compiler... (cached) yes >checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes >checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3 >checking for gcc... (cached) i686-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether i686-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking dependency style of i686-pc-linux-gnu-gcc... (cached) gcc3 >checking whether make sets $(MAKE)... (cached) yes >checking for ANSI C header files... (cached) yes >checking for python... python >checking /usr/include/python2.7/Python.h usability... yes >checking /usr/include/python2.7/Python.h presence... yes >checking for /usr/include/python2.7/Python.h... yes >checking tcl.h usability... yes >checking tcl.h presence... yes >checking for tcl.h... yes >checking /etc/java-config-2/current-system-vm/include/jni.h usability... yes >checking /etc/java-config-2/current-system-vm/include/jni.h presence... yes >checking for /etc/java-config-2/current-system-vm/include/jni.h... yes >checking for sqrt in -lm... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: creating MAR/Makefile >config.status: creating Rigaku/Makefile >config.status: creating Bruker/Makefile >config.status: executing depfiles commands > >***** DIFFRACTION IMAGE LIBRARY CONFIGURATION FINISHED ******* > > >********* SSM CONFIGURATION *********** > >Updating modification times for configuration files >Please wait... >...done. > >configure --enable-shared=yes --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ccp4=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for style of include used by make... GNU >checking for gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognize dependent libraries... pass_all >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran accepts -g... yes >checking the maximum length of command line arguments... 1572864 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for ar... ar >checking for ranlib... ranlib >checking for strip... strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for gfortran option to produce PIC... -fPIC >checking if gfortran PIC flag -fPIC works... yes >checking if gfortran static flag -static works... yes >checking if gfortran supports -c -o file.o... yes >checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether to enable maintainer-specific portions of Makefiles... no >checking whether we are using the GNU C++ compiler... (cached) yes >checking whether i686-pc-linux-gnu-g++ accepts -g... (cached) yes >checking dependency style of i686-pc-linux-gnu-g++... (cached) gcc3 >checking for ANSI C header files... (cached) yes >checking for a BSD-compatible install... /usr/bin/install -c >checking for CMMDBManager in MMDB... no >configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb >checking for floor... yes >checking for pow... yes >checking for rint... yes >checking for sqrt... yes >checking for sqrt in -lm... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: executing depfiles commands > >***** SSM CONFIGURATION FINISHED ******* > > >********* RAPPER CONFIGURATION *********** > >Updating modification times for configuration files >Please wait... >...done. > >configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --disable-shared >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for C++ compiler default output file name... a.out >checking whether the C++ compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking for gcc... i686-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking bstring.h usability... no >checking bstring.h presence... no >checking for bstring.h... no >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a sed that does not truncate output... /bin/sed >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran accepts -g... yes >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for ar... ar >checking for ranlib... ranlib >checking for strip... strip >checking if i686-pc-linux-gnu-gcc static flag works... yes >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking dynamic linker characteristics... GNU/Linux ld.so >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for gfortran option to produce PIC... -fPIC >checking if gfortran PIC flag -fPIC works... yes >checking if gfortran supports -c -o file.o... yes >checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking dynamic linker characteristics... GNU/Linux ld.so >configure: creating ./config.status >config.status: creating Makefile >config.status: WARNING: Makefile.in seems to ignore the --datarootdir setting >config.status: creating LOOP/Makefile >config.status: WARNING: LOOP/Makefile.in seems to ignore the --datarootdir setting >config.status: creating data/Makefile >config.status: WARNING: data/Makefile.in seems to ignore the --datarootdir setting >config.status: executing depfiles commands >=== configuring in gc7.0 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/gc7.0) >configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=. >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking target system type... i686-pc-linux-gnu >checking GC version numbers... major=7 minor=0 >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for style of include used by make... GNU >checking for gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking for ar... ar >checking for ranlib... ranlib >checking for a BSD-compatible install... /usr/bin/install -c >checking for thread model used by GCC... posix >configure: WARNING: "Explict GC_INIT() calls may be required." >checking for xlc... no >checking for dlopen in -ldl... yes >checking whether to build shared libraries... yes >checking which machine-dependent code should be used... >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognise dependent libraries... pass_all >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran accepts -g... yes >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for ar... (cached) ar >checking for ranlib... (cached) ranlib >checking for strip... strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for gfortran option to produce PIC... -fPIC >checking if gfortran PIC flag -fPIC works... yes >checking if gfortran static flag -static works... yes >checking if gfortran supports -c -o file.o... yes >checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking sys/dg_sys_info.h usability... no >checking sys/dg_sys_info.h presence... no >checking for sys/dg_sys_info.h... no >checking whether Solaris gcc optimization fix is necessary... no >checking atomic_ops.h usability... yes >checking atomic_ops.h presence... yes >checking for atomic_ops.h... yes >configure: Using pre-installed libatomic_ops >configure: creating ./config.status >config.status: creating Makefile >config.status: creating bdw-gc.pc >config.status: executing depfiles commands >config.status: executing default commands >=== configuring in libxml2 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/src/rapper/libxml2) >configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' '--bindir=/usr/libexec/ccp4/bin/' '--libdir=/usr/lib' '--disable-shared' 'CXX=i686-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -pipe -fPIC' 'CC=i686-pc-linux-gnu-gcc' 'CFLAGS=-O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=. >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for a BSD-compatible install... /usr/bin/install -c >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for rm... /bin/rm >checking for mv... /bin/mv >checking for tar... /bin/tar >checking for perl... /usr/bin/perl >checking for xmllint... /usr/bin/xmllint >checking for xsltproc... /usr/bin/xsltproc >checking for function prototypes... yes >checking for egrep... grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for string.h... (cached) yes >checking for a sed that does not truncate output... /bin/sed >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether gfortran accepts -g... yes >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for ar... ar >checking for ranlib... ranlib >checking for strip... strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for gfortran option to produce PIC... -fPIC >checking if gfortran PIC flag -fPIC works... yes >checking if gfortran static flag -static works... yes >checking if gfortran supports -c -o file.o... yes >checking whether the gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >Checking zlib >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking for gzread in -lz... yes >Checking headers >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for ANSI C header files... (cached) yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking for unistd.h... (cached) yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking dirent.h usability... yes >checking dirent.h presence... yes >checking for dirent.h... yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking malloc.h usability... yes >checking malloc.h presence... yes >checking for malloc.h... yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking for sys/stat.h... (cached) yes >checking for sys/types.h... (cached) yes >checking time.h usability... yes >checking time.h presence... yes >checking for time.h... yes >checking ansidecl.h usability... yes >checking ansidecl.h presence... yes >checking for ansidecl.h... yes >checking ieeefp.h usability... no >checking ieeefp.h presence... no >checking for ieeefp.h... no >checking nan.h usability... no >checking nan.h presence... no >checking for nan.h... no >checking math.h usability... yes >checking math.h presence... yes >checking for math.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking fp_class.h usability... no >checking fp_class.h presence... no >checking for fp_class.h... no >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking for stdlib.h... (cached) yes >checking for sys/socket.h... yes >checking for netinet/in.h... yes >checking for arpa/inet.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking sys/mman.h usability... yes >checking sys/mman.h presence... yes >checking for sys/mman.h... yes >checking sys/timeb.h usability... yes >checking sys/timeb.h presence... yes >checking for sys/timeb.h... yes >checking signal.h usability... yes >checking signal.h presence... yes >checking for signal.h... yes >checking for arpa/nameser.h... yes >checking for resolv.h... yes >checking dl.h usability... no >checking dl.h presence... no >checking for dl.h... no >checking for dlfcn.h... (cached) yes >Checking libraries >checking for strftime... yes >checking for strdup... yes >checking for strndup... yes >checking for strerror... yes >checking for finite... yes >checking for isnand... no >checking for fp_class... no >checking for class... no >checking for fpclass... no >checking for strftime... (cached) yes >checking for localtime... yes >checking for gettimeofday... yes >checking for ftime... yes >checking for stat... yes >checking for _stat... no >checking for signal... yes >checking for printf... yes >checking for sprintf... yes >checking for fprintf... yes >checking for snprintf... yes >checking for vfprintf... yes >checking for vsprintf... yes >checking for vsnprintf... yes >checking for sscanf... yes >checking for va_copy... yes >checking for library containing gethostent... none required >checking for library containing setsockopt... none required >checking for library containing connect... none required >checking for type of socket length (socklen_t)... socklen_t * >checking whether to enable IPv6... yes >checking struct sockaddr::ss_family... yes >checking for getaddrinfo... yes >checking for isnan... yes >checking for isinf... yes >checking for python... /usr/bin/python >Found Python version 2.7 >checking for shl_load... no >checking for shl_load in -ldld... no >checking for dlopen... no >checking for dlopen in -ldl... yes >Checking configuration requirements >Enabling multithreaded support >checking pthread.h usability... yes >checking pthread.h presence... yes >checking for pthread.h... yes >checking for pthread_join in -lpthread... yes >checking iconv.h usability... yes >checking iconv.h presence... yes >checking for iconv.h... yes >checking for iconv... yes >Enabled Schematron support >Enabled Schemas/Relax-NG support >configure: creating ./config.status >config.status: creating libxml2.spec >config.status: creating Makefile >config.status: creating include/Makefile >config.status: creating include/libxml/Makefile >config.status: creating doc/Makefile >config.status: creating doc/examples/Makefile >config.status: creating doc/devhelp/Makefile >config.status: creating example/Makefile >config.status: creating python/Makefile >config.status: creating python/tests/Makefile >config.status: creating xstc/Makefile >config.status: creating include/libxml/xmlversion.h >config.status: creating xml2-config >config.status: creating libxml-2.0.pc >config.status: creating libxml-2.0-uninstalled.pc >config.status: creating python/setup.py >config.status: creating config.h >config.status: executing depfiles commands >Done configuring > >***** RAPPER CONFIGURATION FINISHED ******* > > >********* PISA CONFIGURATION *********** > >Updating modification times for configuration files >Please wait... >...done. > >configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --with-ssm=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for C++ compiler default output file name... a.out >checking whether the C++ compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking for egrep... grep -E >checking for ANSI C header files... yes >checking for a BSD-compatible install... /usr/bin/install -c >checking for floor... yes >checking for pow... yes >checking for rint... yes >checking for sqrt... yes >checking for sqrt in -lm... yes >checking for CMMDBManager in MMDB... no >configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb >checking for CSSMAlign in SSM... no >configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib -lssm headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm >configure: creating ./config.status >config.status: creating Makefile >config.status: creating pisastore/Makefile >config.status: creating molref/Makefile >config.status: creating sbase/Makefile >config.status: creating doc/Makefile >config.status: creating pisa.cfg >config.status: executing depfiles commands > >***** PISA CONFIGURATION FINISHED ******* > > > Building of the RCSB PDB_EXTRACT suite has been suppressed. > As a result you will not be able to use the PDB_EXTRACT programs. > >The configuration can be re-built by executing config.status : > >#!/bin/sh ># (Generated automatically by configure) ># CCP4 was configured as follows: >libdir="/usr/lib" RANLIB="ranlib" \ >FC="gfortran" FOPTIM="-O2 -pipe" \ >COPTIM="-O2 -pipe" XFFLAGS="-fno-second-underscore -fno-stack-protector -fPIC" \ >XCFLAGS="-DGFORTRAN -DPROTOTYPE -fPIC" CC="i686-pc-linux-gnu-gcc" \ >LNS="ln -s" M4="m4 -D_gfort=1" \ >XCXXFLAGS=" -fPIC" CXX="i686-pc-linux-gnu-g++" \ >CXXOPTIM="-O2 -pipe" \ >M4FLAGS="" SETFLAGS="lgglib_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' arp_waters_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O2 -pipe -fforce-mem' " \ >MAKE="make" F="f" \ >INSTALL_PROGRAM="cp -p" INSTALL_DATA="cp -p" \ >XLDFLAGS=" -lm" \ >SHARE_LIB=" i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so ${CORELIBOBJS} ${CGENERALOBJS} ${CUCOBJS} ${CMTZOBJS} ${CMAPOBJS} ${CSYMOBJS} -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so ${FORTRANLOBJS} ${FINTERFACEOBJS} -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm" \ >SHARED_LIB_CFLAGS='' \ >SHARED_LIB_FFLAGS="" \ >SHARE_INST="$(INSTALL_DATA) `pwd`/libmmdb.so $(DESTDIR)/$(libdir)/libmmdb.so; $(INSTALL_DATA) `pwd`/libccp4c.so $(DESTDIR)/$(libdir)/libccp4c.so; $(INSTALL_DATA) `pwd`/libccp4f.so $(DESTDIR)/$(libdir)/libccp4f.so; " \ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/configure --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 --bindir=/usr/libexec/ccp4/bin/ --libdir=/usr/lib --onlylibs --with-shared-libs --tmpdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/temp --disable-x --disable-cctbx --disable-phaser --disable-mapslicer --enable-ssm --disable-clipper --disable-fftw --with-fftw=/usr --with-warnings --disable-pdb_extract linux -hush > >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3 ... >make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ onlylib >if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/lapack; \ > make ; else true; fi >if test -n "lib/ccif"; then cd lib/ccif; \ > make ; else true; fi >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >gawk -f ./condition.awk ./condition.list >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o condition.o ./condition.c && \ >ar r libccif.a condition.o && true >ar: creating libccif.a >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_map.o ./star_map.c &&\ >ar r libccif.a star_map.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o ccif_unix.o ./ccif_unix.c && \ >ar r libccif.a ccif_unix.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sym.o ./sym.c && \ >ar r libccif.a sym.o && true >./sym.c: In function ‘zzs_undump’: >./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:852:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:853:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:860:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:861:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:862:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:863:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:864:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:894:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c:901:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result >./sym.c: In function ‘zzs_dump’: >./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:722:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:723:4: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:730:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:731:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:732:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:733:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:734:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:735:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >./sym.c:762:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sorlist.o ./sorlist.c && \ >ar r libccif.a sorlist.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. ./scanf_ansi.c -o scanf_ansi >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_scan.o ./star_scan.c -DPTR_FROM_TEXT=`./scanf_test` && \ >ar r libccif.a star_scan.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_err.o ./star_err.c && \ >ar r libccif.a star_err.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o value_manip.o ./value_manip.c && \ >ar r libccif.a value_manip.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o context.o ./context.c && \ >ar r libccif.a context.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o struct_manip.o ./struct_manip.c && \ >ar r libccif.a struct_manip.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o f_interface.o ./f_interface.c && \ >ar r libccif.a f_interface.o && true >In file included from /usr/include/string.h:642:0, > from ./library.h:166, > from ./stdpccts.h:42, > from ./f_interface.c:27: >In function ‘strncpy’, > inlined from ‘ccif_block_by_index_’ at ./f_interface.c:4072:11: >/usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_walk.o ./star_walk.c && \ >ar r libccif.a star_walk.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_print.o -D_refvar_inits=star_print_refvar_inits ./star_print.c && \ >ar r libccif.a star_print.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o star_graph.o -D_refvar_inits=star_dot_refvar_inits ./star_graph.c && \ >ar r libccif.a star_graph.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o lib_dict2tab.o -D_refvar_inits=_dict_refvar_inits \ >./lib_dict2tab.c && \ >ar r libccif.a lib_dict2tab.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o sort.o ./sort.c && \ >ar r libccif.a sort.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o list.o ./list.c && \ >ar r libccif.a list.o && true >ranlib libccif.a >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -fPIC -o rb.o ./rb.c && \ >ar r libccif.a rb.o && true >./rb.c: In function ‘rb_print_tree’: >./rb.c:446:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:448:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’ >./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:454:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ >./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ >./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ >./rb.c:462:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ >./rb.c: In function ‘rb_iprint_tree’: >./rb.c:471:5: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’ >./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 4 has type ‘struct rb_node *’ >./rb.c:474:13: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ >./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ >./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ >./rb.c:481:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ >./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’ >./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’ >./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’ >./rb.c:489:15: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’ >ranlib libccif.a >if ( test ! -f ./strtod.c ); then touch ./strtod.c; fi >if (test -s ./strtod.c -a -r ./strtod.c) ; \ > then \ > i686-pc-linux-gnu-gcc -c ./strtod.c && ar r libccif.a strtod.o; \ > ranlib libccif.a ; rm -f strtod.o; \ > else \ > touch libccif.a ; \ >fi >if test -f /librx.a; then \ > rm -rf rx.dir; mkdir rx.dir; \ > echo 'rxdispencer routines being added to library'; \ > cp /librx.a rx.dir; cd rx.dir; \ > ar -x librx.a; cd ..; \ > ar r libccif.a rx.dir/*.o; \ > ranlib libccif.a; rm -rf rx.dir; \ >fi >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm >i686-pc-linux-gnu-gcc -c -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. ./cifdic_to_symtab.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm > >Building symbol table: >LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out >Loading dictionary....dictionary loaded. >Starting first tree walk....tree walk completed. >Starting second tree walk....tree walk completed. >Grouping items in their categories....done >Dumping symbol table....symbol table dumped. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >cd lib/src; make >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >test ! -x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit && i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -o /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit fsplit.c || true >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_err.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_file.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_utils.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_array.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cvecmat.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_program.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c: In function ‘ccperror’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_general.c:98:3: warning: passing argument 2 of ‘ccp4InvokeCallback’ discards qualifiers from pointer target type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_program.h:128:5: note: expected ‘char *’ but argument is of type ‘const char *’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_accessor.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_close.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_data.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_header.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_labels.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_open.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_skew.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_stats.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmap_symop.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib.o .o`.c >ar r ./libccp4c.a library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o >ar: creating ./libccp4c.a >ranlib libccp4c.a >rm -rf parser.dir; mkdir parser.dir >cd parser.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/parser.f && rm -f ZZZ*.f zzz*.f; >keynum.f >keyerr.f >gtnrea.f >gtnint.f >gtprea.f >gtpint.f >sblank.f >cmatch.f >chkkey.f >putlin.f >blank.f >lerror.f >rdsymm.f >rdhead.f >rdcell.f >rdreso.f >rdscal.f >rdresl.f >gttrea.f >gttint.f >rdatomselect.f >if test ! -f parser.dir/parser.f; then \ > echo ' SUBROUTINE PRSER' > parser.dir/parser.f; \ > echo ' END' >> parser.dir/parser.f; \ >fi >cd parser.dir && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >ar: creating .././libccp4f.a >rm -rf fftlib.dir; mkdir fftlib.dir >echo ' SUBROUTINE FFTLIB' > fftlib.dir/fftlib.f >echo ' END' >> fftlib.dir/fftlib.f >cd fftlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fftlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done \ > && ar r .././libccp4f.a *.o >rm -rf lgglib.dir; mkdir lgglib.dir >echo ' SUBROUTINE LGGLIB' > lgglib.dir/lgglib.f >echo ' END' >> lgglib.dir/lgglib.f >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb1.f:29.72: > > 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) > 1 >Warning: Branch at (1) may result in an infinite loop >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb2.f:31.72: > > 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) > 1 >Warning: Branch at (1) may result in an infinite loop >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb3.f:31.72: > > 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) > 1 >Warning: Branch at (1) may result in an infinite loop >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdbca.f:24.72: > > 1 , (X(I,NATM),I=1,3) > 1 >Warning: Branch at (1) may result in an infinite loop >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getpdb.f:23.72: > > 1 , (X(I,NATM),I=1,3) > 1 >Warning: Branch at (1) may result in an infinite loop >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/lgglib.dir/getrdi.f:25.72: > > 1 SEQ(NATM), RES(NATM), ATOM(NATM) > 1 >Warning: Branch at (1) may result in an infinite loop >rm -rf libhtml.dir; mkdir libhtml.dir >echo ' SUBROUTINE LIBHTML' > libhtml.dir/libhtml.f >echo ' END' >> libhtml.dir/libhtml.f >cd libhtml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libhtml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf modlib.dir; mkdir modlib.dir >echo ' SUBROUTINE MODLIB' > modlib.dir/modlib.f >echo ' END' >> modlib.dir/modlib.f >cd modlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/modlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf plotsubs.dir; mkdir plotsubs.dir >echo ' SUBROUTINE PLOTSUBS' > plotsubs.dir/plotsubs.f >echo ' END' >> plotsubs.dir/plotsubs.f >cd plotsubs.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plotsubs.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf plot84lib.dir; mkdir plot84lib.dir >echo ' SUBROUTINE PLOT84LIB' > plot84lib.dir/plot84lib.f >echo ' END' >> plot84lib.dir/plot84lib.f >cd plot84lib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/plot84lib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf pxxml.dir; mkdir pxxml.dir >echo ' SUBROUTINE PXXML' > pxxml.dir/pxxml.f >echo ' END' >> pxxml.dir/pxxml.f >cd pxxml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pxxml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf ccplib.dir; mkdir ccplib.dir >echo ' SUBROUTINE CCPLIB' > ccplib.dir/ccplib.f >echo ' END' >> ccplib.dir/ccplib.f >cd ccplib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccplib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >m4 -D_gfort=1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/unix.m4 >unix.f >rm -rf unix.dir; mkdir unix.dir >echo ' SUBROUTINE UNIX' > unix.dir/unix.f >echo ' END' >> unix.dir/unix.f >cd unix.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit ../unix.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf rwbrook.dir; mkdir rwbrook.dir >echo ' SUBROUTINE RWBROOK' > rwbrook.dir/rwbrook.f >echo ' END' >> rwbrook.dir/rwbrook.f >cd rwbrook.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/rwbrook.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >rm -rf cciflib.dir; mkdir cciflib.dir >echo ' SUBROUTINE CCIFLIB' > cciflib.dir/cciflib.f >echo ' END' >> cciflib.dir/cciflib.f >cd cciflib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cciflib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ > && ar r .././libccp4f.a *.o >rm -rf harvlib.dir; mkdir harvlib.dir >echo ' SUBROUTINE HARVLIB' > harvlib.dir/harvlib.f >echo ' END' >> harvlib.dir/harvlib.f >if test -n "lib/ccif" ; then cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harvlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ > && ar r .././libccp4f.a *.o ; else \ >cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/harv_dummy.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ >for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src $i; done\ > && ar r .././libccp4f.a *.o ; fi >rm -rf keyparse.dir; mkdir keyparse.dir >echo ' SUBROUTINE KEYPARSE' > keyparse.dir/keyparse.f >echo ' END' >> keyparse.dir/keyparse.f >cd keyparse.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/keyparse.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >gfortran -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_f.f && ar r ./libccp4f.a pack_f.o >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘v2pack_chunk’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:901:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:910:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c: In function ‘pack_chunk’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:852:13: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/pack_c.c:860:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result >ar r ./libccp4f.a pack_c.o >rm -rf dna_output.dir; mkdir dna_output.dir >echo ' SUBROUTINE DNA_OUTPUT' > dna_output.dir/dna_output.f >echo ' END' >> dna_output.dir/dna_output.f >cd dna_output.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/dna_output.f >/dev/null && rm -f ZZZ*.f zzz*.f && \ > for i in `pwd`/*.f; do \ > gfortran -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC $i; done\ > && ar r .././libccp4f.a *.o >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmtzlib_f.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrhist_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:275:2: warning: passing argument 2 of ‘ccp4_lrhist’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:662:5: note: expected ‘char (*)[80]’ but argument is of type ‘fpstr’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyin_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:602:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyout_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:656:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lkyset_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:701:3: warning: passing argument 4 of ‘MtzParseLabin’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:718:5: note: expected ‘char (*)[2][31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrassn_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 2 of ‘ccp4_lrassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:800:3: warning: passing argument 4 of ‘ccp4_lrassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:734:10: note: expected ‘char (*)[3]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lrreff_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1180:14: warning: passing argument 5 of ‘ccp4_lrreff’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:787:5: note: expected ‘const struct MTZCOL **’ but argument is of type ‘struct MTZCOL **’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhist_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1777:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘fpstr’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwhstl_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:1829:2: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:855:5: note: expected ‘const char (*)[80]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwassn_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2381:5: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c: In function ‘lwclab_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[31]’ but argument is of type ‘char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib_f.c:2459:3: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmtzlib.h:887:10: note: expected ‘const char (*)[3]’ but argument is of type ‘char *’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename csymlib_f.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr3_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:341:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘symtr4_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:377:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c: In function ‘calc_orig_ps_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib_f.c:1684:3: warning: passing argument 3 of ‘ccp4spg_generate_origins’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/csymlib.h:579:5: note: expected ‘const float (*)[4][4]’ but argument is of type ‘float (*)[4][4]’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_parser_f.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename library_f.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘ltime_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:799:3: warning: passing argument 1 of ‘localtime_r’ makes pointer from integer without a cast >/usr/include/time.h:248:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c: In function ‘gmtime_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/library_f.c:832:3: warning: passing argument 1 of ‘gmtime_r’ makes pointer from integer without a cast >/usr/include/time.h:243:19: note: expected ‘const time_t * __restrict__’ but argument is of type ‘long int’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_diskio_f.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_general_f.o .o`.c >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename ccp4_unitcell_f.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orth_to_frac_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:86:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_frac_to_orth_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:105:3: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:61:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orthu_to_fracu_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:124:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_fracu_to_orthu_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell_f.c:143:3: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_unitcell.h:77:6: note: expected ‘const double (*)[3]’ but argument is of type ‘double (*)[3]’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename cmaplib_f.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ioArrayPrint’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:91:5: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:97:3: warning: passing argument 1 of ‘free’ discards qualifiers from pointer target type >/usr/include/stdlib.h:488:13: note: expected ‘void *’ but argument is of type ‘const char *’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘msywrt_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1154:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c: In function ‘ccp4_map_write_symm_matrix_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/cmaplib_f.c:1181:5: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/ccp4_parser.h:290:7: note: expected ‘const float (*)[4]’ but argument is of type ‘float (*)[4]’ >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename binsortint.o .o`.c >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c: In function ‘srtbeg_’: >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:160:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result >/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/binsortint.c:161:7: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/`basename hybrid_36_f.o .o`.c >ar r ./libccp4f.a cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o >ranlib libccp4f.a >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/fftw; \ >make -i install; else true; fi ; \ >make install >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' >for i in lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i ; do (if test -f $i/Makefile; then \ > if test $i = x-windows; then \ > cd $i; make -i -w install; \ > else cd $i; make -w install; fi; \ >else true; fi) ; done >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >Making install in Bruker >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c -o FrmRoutines.lo FrmRoutines.cpp >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o .libs/FrmRoutines.o >FrmRoutines.cpp: In function 'long int* ReadFrameFile(char*, FRM_HEADER*)': >FrmRoutines.cpp:91:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:97:65: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:108:67: warning: format '%d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:114:60: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:116:85: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:132:88: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' >FrmRoutines.cpp:137:75: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' >FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:139:71: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' >FrmRoutines.cpp:149:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:161:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:173:89: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:197:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int' >FrmRoutines.cpp:199:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:215:72: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int' >FrmRoutines.cpp:217:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:244:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' >FrmRoutines.cpp:246:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' >FrmRoutines.cpp: In function 'long int SaveFrameFile(char*, FRM_HEADER*, long int*)': >FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format >FrmRoutines.cpp:349:90: warning: unknown conversion type character 'I' in format >FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format >FrmRoutines.cpp:351:77: warning: unknown conversion type character 'I' in format >FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 3 has type 'INT64*' >FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 4 has type 'INT64*' >FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 5 has type 'INT64*' >FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 6 has type 'INT64*' >FrmRoutines.cpp:354:130: warning: format '%12d' expects type 'int*', but argument 7 has type 'INT64*' >FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 3 has type 'INT64' >FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 4 has type 'INT64' >FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 5 has type 'INT64' >FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 6 has type 'INT64' >FrmRoutines.cpp:356:116: warning: format '%12d' expects type 'int', but argument 7 has type 'INT64' >FrmRoutines.cpp: In function 'long int SaveFrameFile_Old(char*, FRM_HEADER*, long int*)': >FrmRoutines.cpp:448:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:448:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int' >FrmRoutines.cpp:457:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:461:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:482:66: warning: format '%9d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:482:66: warning: format '%7d' expects type 'int', but argument 4 has type 'long int' >FrmRoutines.cpp:491:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:495:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:501:47: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:505:56: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:522:48: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' >FrmRoutines.cpp:524:80: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' >FrmRoutines.cpp:543:60: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FrmRoutines.cpp:559:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:566:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:578:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:585:82: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:592:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp: In function 'long int SaveFrameFile_New(char*, FRM_HEADER*, long int*)': >FrmRoutines.cpp:634:43: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int' >FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*' >FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*' >FrmRoutines.cpp:638:72: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*' >FrmRoutines.cpp:873:66: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:880:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:892:72: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:900:87: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:910:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:920:93: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FrmRoutines.cpp:928:67: warning: format '%d' expects type 'int', but argument 2 has type 'long int' > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o FrmRoutines.o >/dev/null 2>&1 >mv -f .deps/FrmRoutines.Tpo .deps/FrmRoutines.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c -o FRM_LIB.lo FRM_LIB.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o .libs/FRM_LIB.o >FRM_LIB.c: In function 'frm_open_file': >FRM_LIB.c:134:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *' >FRM_LIB.c: In function 'frm_shrink': >FRM_LIB.c:589:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:591:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' >FRM_LIB.c:599:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' >FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:601:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c: In function 'frm_convert_header_longs': >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *' >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 4 has type 'long int *' >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 5 has type 'long int *' >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 6 has type 'long int *' >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 7 has type 'long int *' >FRM_LIB.c:619:9: warning: format '%d' expects type 'int *', but argument 8 has type 'long int *' >FRM_LIB.c:629:13: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:639:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:649:13: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:661:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:673:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' >FRM_LIB.c:685:17: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' >FRM_LIB.c: In function 'frm_convert_header': >FRM_LIB.c:797:9: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int' >FRM_LIB.c: In function 'frm_trim': >FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:997:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:1021:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1023:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c: In function 'frm_truncate': >FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 2 has type 'long int' >FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:1082:9: warning: format '%d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:1106:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1108:5: warning: format '%10d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' >FRM_LIB.c:1116:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' >FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1118:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c: In function 'frm_reorientate': >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 5 has type 'long int' >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 6 has type 'long int' >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 7 has type 'long int' >FRM_LIB.c:1302:5: warning: format '%12d' expects type 'int', but argument 8 has type 'long int' >FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 3 has type 'long int' >FRM_LIB.c:1304:5: warning: format '%12d' expects type 'int', but argument 4 has type 'long int' > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o FRM_LIB.o >/dev/null 2>&1 >mv -f .deps/FRM_LIB.Tpo .deps/FRM_LIB.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o libbruker.la FrmRoutines.lo FRM_LIB.lo -lm >ar cru .libs/libbruker.a FrmRoutines.o FRM_LIB.o >ranlib .libs/libbruker.a >creating libbruker.la >(cd .libs && rm -f libbruker.la && ln -s ../libbruker.la libbruker.la) >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >Making install in MAR >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c -o mar300_header.lo mar300_header.c >mkdir .libs > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o .libs/mar300_header.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o mar300_header.o >/dev/null 2>&1 >mv -f .deps/mar300_header.Tpo .deps/mar300_header.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c -o mar345_header.lo mar345_header.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o .libs/mar345_header.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o mar345_header.o >/dev/null 2>&1 >mv -f .deps/mar345_header.Tpo .deps/mar345_header.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c -o marcif.lo marcif.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o .libs/marcif.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o marcif.o >/dev/null 2>&1 >mv -f .deps/marcif.Tpo .deps/marcif.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c -o nb_header.lo nb_header.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o .libs/nb_header.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o nb_header.o >/dev/null 2>&1 >mv -f .deps/nb_header.Tpo .deps/nb_header.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o .libs/swap.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o swap.o >/dev/null 2>&1 >mv -f .deps/swap.Tpo .deps/swap.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o .libs/utils.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o utils.o >/dev/null 2>&1 >mv -f .deps/utils.Tpo .deps/utils.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c -o pck.lo pck.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o .libs/pck.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o pck.o >/dev/null 2>&1 >mv -f .deps/pck.Tpo .deps/pck.Plo >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -static -o libmar.la mar300_header.lo mar345_header.lo marcif.lo nb_header.lo swap.lo utils.lo pck.lo -lm >ar cru .libs/libmar.a mar300_header.o mar345_header.o marcif.o nb_header.o swap.o utils.o pck.o >ranlib .libs/libmar.a >creating libmar.la >(cd .libs && rm -f libmar.la && ln -s ../libmar.la libmar.la) >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >Making install in Rigaku >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c -o ReadRAXISImages.lo ReadRAXISImages.cpp >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o .libs/ReadRAXISImages.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o ReadRAXISImages.o >/dev/null 2>&1 >mv -f .deps/ReadRAXISImages.Tpo .deps/ReadRAXISImages.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o librigaku.la ReadRAXISImages.lo -lm >ar cru .libs/librigaku.a ReadRAXISImages.o >ranlib .libs/librigaku.a >creating librigaku.la >(cd .libs && rm -f librigaku.la && ln -s ../librigaku.la librigaku.la) >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c -o DiffractionImageJpeg.lo DiffractionImageJpeg.cpp >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o .libs/DiffractionImageJpeg.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o DiffractionImageJpeg.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageJpeg.Tpo .deps/DiffractionImageJpeg.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c -o DiffractionImageADSC.lo DiffractionImageADSC.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o .libs/DiffractionImageADSC.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o DiffractionImageADSC.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageADSC.Tpo .deps/DiffractionImageADSC.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c -o DiffractionImageCBF.lo DiffractionImageCBF.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o .libs/DiffractionImageCBF.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o DiffractionImageCBF.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageCBF.Tpo .deps/DiffractionImageCBF.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c -o DiffractionImageMAR.lo DiffractionImageMAR.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o .libs/DiffractionImageMAR.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o DiffractionImageMAR.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageMAR.Tpo .deps/DiffractionImageMAR.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c -o DiffractionImageRAXIS.lo DiffractionImageRAXIS.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o .libs/DiffractionImageRAXIS.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o DiffractionImageRAXIS.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageRAXIS.Tpo .deps/DiffractionImageRAXIS.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c -o DiffractionImageRaxisDtrek.lo DiffractionImageRaxisDtrek.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o .libs/DiffractionImageRaxisDtrek.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o DiffractionImageRaxisDtrek.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageRaxisDtrek.Tpo .deps/DiffractionImageRaxisDtrek.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c -o DiffractionImageSaturn.lo DiffractionImageSaturn.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o .libs/DiffractionImageSaturn.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o DiffractionImageSaturn.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageSaturn.Tpo .deps/DiffractionImageSaturn.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c -o DiffractionImageBruker.lo DiffractionImageBruker.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o .libs/DiffractionImageBruker.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o DiffractionImageBruker.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageBruker.Tpo .deps/DiffractionImageBruker.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c -o DiffractionImageOxford.lo DiffractionImageOxford.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o .libs/DiffractionImageOxford.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o DiffractionImageOxford.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageOxford.Tpo .deps/DiffractionImageOxford.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c -o DiffractionImageTiff.lo DiffractionImageTiff.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o .libs/DiffractionImageTiff.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o DiffractionImageTiff.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageTiff.Tpo .deps/DiffractionImageTiff.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c -o DiffractionImage.lo DiffractionImage.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o .libs/DiffractionImage.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o DiffractionImage.o >/dev/null 2>&1 >mv -f .deps/DiffractionImage.Tpo .deps/DiffractionImage.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c -o DiffractionImageRaw.lo DiffractionImageRaw.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o .libs/DiffractionImageRaw.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o DiffractionImageRaw.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageRaw.Tpo .deps/DiffractionImageRaw.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c -o DiffractionImageUtility.lo DiffractionImageUtility.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o .libs/DiffractionImageUtility.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o DiffractionImageUtility.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageUtility.Tpo .deps/DiffractionImageUtility.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c -o DiffractionImageCalculations.lo DiffractionImageCalculations.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o .libs/DiffractionImageCalculations.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o DiffractionImageCalculations.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageCalculations.Tpo .deps/DiffractionImageCalculations.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c -o DiffractionImageImgOperations.lo DiffractionImageImgOperations.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o .libs/DiffractionImageImgOperations.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o DiffractionImageImgOperations.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageImgOperations.Tpo .deps/DiffractionImageImgOperations.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c -o DiffractionImageException.lo DiffractionImageException.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o .libs/DiffractionImageException.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o DiffractionImageException.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageException.Tpo .deps/DiffractionImageException.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c -o DiffractionImageCompare.lo DiffractionImageCompare.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o .libs/DiffractionImageCompare.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o DiffractionImageCompare.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageCompare.Tpo .deps/DiffractionImageCompare.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c -o DiffractionImageAutomask.lo DiffractionImageAutomask.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o .libs/DiffractionImageAutomask.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o DiffractionImageAutomask.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageAutomask.Tpo .deps/DiffractionImageAutomask.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c -o Profile.lo Profile.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o .libs/Profile.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o Profile.o >/dev/null 2>&1 >mv -f .deps/Profile.Tpo .deps/Profile.Plo >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c -o Peak.lo Peak.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o .libs/Peak.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o Peak.o >/dev/null 2>&1 >mv -f .deps/Peak.Tpo .deps/Peak.Plo >/bin/sh ./libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c -o dps_peaksearch_cn.lo dps_peaksearch_cn.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o .libs/dps_peaksearch_cn.o >dps_peaksearch_cn.c: In function 'dps_peaksearch_cn': >dps_peaksearch_cn.c:403:2: warning: passing argument 4 of 'qsort' from incompatible pointer type >/usr/include/stdlib.h:761:13: note: expected '__compar_fn_t' but argument is of type 'int (*)(struct DPS_Peak *, struct DPS_Peak *)' > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o dps_peaksearch_cn.o >/dev/null 2>&1 >mv -f .deps/dps_peaksearch_cn.Tpo .deps/dps_peaksearch_cn.Plo >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -static -o libDiffImage.la -rpath /usr/lib DiffractionImageJpeg.lo DiffractionImageADSC.lo DiffractionImageCBF.lo DiffractionImageMAR.lo DiffractionImageRAXIS.lo DiffractionImageRaxisDtrek.lo DiffractionImageSaturn.lo DiffractionImageBruker.lo DiffractionImageOxford.lo DiffractionImageTiff.lo DiffractionImage.lo DiffractionImageRaw.lo DiffractionImageUtility.lo DiffractionImageCalculations.lo DiffractionImageImgOperations.lo DiffractionImageException.lo DiffractionImageCompare.lo DiffractionImageAutomask.lo Profile.lo Peak.lo dps_peaksearch_cn.lo -lm >ar cru .libs/libDiffImage.a DiffractionImageJpeg.o DiffractionImageADSC.o DiffractionImageCBF.o DiffractionImageMAR.o DiffractionImageRAXIS.o DiffractionImageRaxisDtrek.o DiffractionImageSaturn.o DiffractionImageBruker.o DiffractionImageOxford.o DiffractionImageTiff.o DiffractionImage.o DiffractionImageRaw.o DiffractionImageUtility.o DiffractionImageCalculations.o DiffractionImageImgOperations.o DiffractionImageException.o DiffractionImageCompare.o DiffractionImageAutomask.o Profile.o Peak.o dps_peaksearch_cn.o >ranlib .libs/libDiffImage.a >creating libDiffImage.la >(cd .libs && rm -f libDiffImage.la && ln -s ../libDiffImage.la libDiffImage.la) >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c -o DiffractionImagePythonInterface.lo DiffractionImagePythonInterface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o .libs/DiffractionImagePythonInterface.o >DiffractionImagePythonInterface.cpp: In function 'void SWIG_Python_AddErrorMsg(const char*)': >DiffractionImagePythonInterface.cpp:870:42: warning: format not a string literal and no format arguments > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o DiffractionImagePythonInterface.o >/dev/null 2>&1 >mv -f .deps/DiffractionImagePythonInterface.Tpo .deps/DiffractionImagePythonInterface.Plo >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o lib_DiffractionImage.la -rpath /usr/lib DiffractionImagePythonInterface.lo -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImagePythonInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,lib_DiffractionImage.so.0 -o .libs/lib_DiffractionImage.so.0.0.0 >(cd .libs && rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0) >(cd .libs && rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so) >rm -fr .libs/lib_DiffractionImage.lax >mkdir .libs/lib_DiffractionImage.lax >rm -fr .libs/lib_DiffractionImage.lax/libbruker.a >mkdir .libs/lib_DiffractionImage.lax/libbruker.a >(cd .libs/lib_DiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) >rm -fr .libs/lib_DiffractionImage.lax/libmar.a >mkdir .libs/lib_DiffractionImage.lax/libmar.a >(cd .libs/lib_DiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) >rm -fr .libs/lib_DiffractionImage.lax/librigaku.a >mkdir .libs/lib_DiffractionImage.lax/librigaku.a >(cd .libs/lib_DiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) >ar cru .libs/lib_DiffractionImage.a DiffractionImagePythonInterface.o .libs/lib_DiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/lib_DiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/lib_DiffractionImage.lax/libmar.a/mar345_header.o .libs/lib_DiffractionImage.lax/libmar.a/marcif.o .libs/lib_DiffractionImage.lax/libmar.a/pck.o .libs/lib_DiffractionImage.lax/libmar.a/swap.o .libs/lib_DiffractionImage.lax/libmar.a/mar300_header.o .libs/lib_DiffractionImage.lax/libmar.a/nb_header.o .libs/lib_DiffractionImage.lax/libmar.a/utils.o .libs/lib_DiffractionImage.lax/librigaku.a/ReadRAXISImages.o >ranlib .libs/lib_DiffractionImage.a >rm -fr .libs/lib_DiffractionImage.lax >creating lib_DiffractionImage.la >(cd .libs && rm -f lib_DiffractionImage.la && ln -s ../lib_DiffractionImage.la lib_DiffractionImage.la) >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c -o DiffractionImageTclInterface.lo DiffractionImageTclInterface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageTclInterface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o DiffractionImageTclInterface.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageTclInterface.Tpo .deps/DiffractionImageTclInterface.Plo >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o libDiffractionImage.la -rpath /usr/lib DiffractionImageTclInterface.lo -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImageTclInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libDiffractionImage.so.0 -o .libs/libDiffractionImage.so.0.0.0 >(cd .libs && rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0) >(cd .libs && rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so) >rm -fr .libs/libDiffractionImage.lax >mkdir .libs/libDiffractionImage.lax >rm -fr .libs/libDiffractionImage.lax/libbruker.a >mkdir .libs/libDiffractionImage.lax/libbruker.a >(cd .libs/libDiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) >rm -fr .libs/libDiffractionImage.lax/libmar.a >mkdir .libs/libDiffractionImage.lax/libmar.a >(cd .libs/libDiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) >rm -fr .libs/libDiffractionImage.lax/librigaku.a >mkdir .libs/libDiffractionImage.lax/librigaku.a >(cd .libs/libDiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) >ar cru .libs/libDiffractionImage.a DiffractionImageTclInterface.o .libs/libDiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImage.lax/libmar.a/mar345_header.o .libs/libDiffractionImage.lax/libmar.a/marcif.o .libs/libDiffractionImage.lax/libmar.a/pck.o .libs/libDiffractionImage.lax/libmar.a/swap.o .libs/libDiffractionImage.lax/libmar.a/mar300_header.o .libs/libDiffractionImage.lax/libmar.a/nb_header.o .libs/libDiffractionImage.lax/libmar.a/utils.o .libs/libDiffractionImage.lax/librigaku.a/ReadRAXISImages.o >ranlib .libs/libDiffractionImage.a >rm -fr .libs/libDiffractionImage.lax >creating libDiffractionImage.la >(cd .libs && rm -f libDiffractionImage.la && ln -s ../libDiffractionImage.la libDiffractionImage.la) >/bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c -o DiffractionImageJavaInterface.lo DiffractionImageJavaInterface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageJavaInterface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o DiffractionImageJavaInterface.o >/dev/null 2>&1 >mv -f .deps/DiffractionImageJavaInterface.Tpo .deps/DiffractionImageJavaInterface.Plo >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -shared --whole-archive libDiffImage.la -lcbf ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg --no-whole-archive -rpath '/usr/lib' -o libDiffractionImaJ.la -rpath /usr/lib DiffractionImageJavaInterface.lo -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/DiffractionImageJavaInterface.o -Wl,--whole-archive ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -lcbf /usr/lib/libjpeg.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libDiffractionImaJ.so.0 -o .libs/libDiffractionImaJ.so.0.0.0 >(cd .libs && rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0) >(cd .libs && rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so) >rm -fr .libs/libDiffractionImaJ.lax >mkdir .libs/libDiffractionImaJ.lax >rm -fr .libs/libDiffractionImaJ.lax/libbruker.a >mkdir .libs/libDiffractionImaJ.lax/libbruker.a >(cd .libs/libDiffractionImaJ.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Bruker/.libs/libbruker.a) >rm -fr .libs/libDiffractionImaJ.lax/libmar.a >mkdir .libs/libDiffractionImaJ.lax/libmar.a >(cd .libs/libDiffractionImaJ.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./MAR/.libs/libmar.a) >rm -fr .libs/libDiffractionImaJ.lax/librigaku.a >mkdir .libs/libDiffractionImaJ.lax/librigaku.a >(cd .libs/libDiffractionImaJ.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/./Rigaku/.libs/librigaku.a) >ar cru .libs/libDiffractionImaJ.a DiffractionImageJavaInterface.o .libs/libDiffractionImaJ.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImaJ.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImaJ.lax/libmar.a/mar345_header.o .libs/libDiffractionImaJ.lax/libmar.a/marcif.o .libs/libDiffractionImaJ.lax/libmar.a/pck.o .libs/libDiffractionImaJ.lax/libmar.a/swap.o .libs/libDiffractionImaJ.lax/libmar.a/mar300_header.o .libs/libDiffractionImaJ.lax/libmar.a/nb_header.o .libs/libDiffractionImaJ.lax/libmar.a/utils.o .libs/libDiffractionImaJ.lax/librigaku.a/ReadRAXISImages.o >ranlib .libs/libDiffractionImaJ.a >rm -fr .libs/libDiffractionImaJ.lax >creating libDiffractionImaJ.la >(cd .libs && rm -f libDiffractionImaJ.la && ln -s ../libDiffractionImaJ.la libDiffractionImaJ.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT automask.o -MD -MP -MF .deps/automask.Tpo -c -o automask.o automask.cpp >mv -f .deps/automask.Tpo .deps/automask.Po >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o automask automask.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm >i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o automask automask.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT diffdump.o -MD -MP -MF .deps/diffdump.Tpo -c -o diffdump.o diffdump.cpp >mv -f .deps/diffdump.Tpo .deps/diffdump.Po >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diffdump diffdump.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm >i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diffdump diffdump.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT printpeaks.o -MD -MP -MF .deps/printpeaks.Tpo -c -o printpeaks.o printpeaks.cpp >mv -f .deps/printpeaks.Tpo .deps/printpeaks.Po >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o printpeaks printpeaks.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm >i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o printpeaks printpeaks.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I/usr/include/python2.7 -I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -O2 -pipe -fPIC -g -O0 -MT diff2jpeg.o -MD -MP -MF .deps/diff2jpeg.Tpo -c -o diff2jpeg.o diff2jpeg.cpp >mv -f .deps/diff2jpeg.Tpo .deps/diff2jpeg.Po >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diff2jpeg diff2jpeg.o libDiffImage.la ./Bruker/libbruker.la -lcbf ./MAR/libmar.la ./Rigaku/librigaku.la -ljpeg -lm >i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -g -O0 -o diff2jpeg diff2jpeg.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a -lcbf ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a /usr/lib/libjpeg.so -lm >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la' >/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la >/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la' >/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; }) >/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la >/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la' >/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; }) >/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la >/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la' >/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; }) >/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la >/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' >test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" > /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask' >cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask > /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump' >cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump > /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks' >cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks > /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg' >cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg >cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc >cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html >cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >if test -f /librx.a; then \ > rm -rf rx.dir; mkdir rx.dir; \ > echo 'rxdispencer routines being added to library'; \ > cp /librx.a rx.dir; cd rx.dir; \ > ar -x librx.a; cd ..; \ > ar r libccif.a rx.dir/*.o; \ > ranlib libccif.a; rm -rf rx.dir; \ >fi >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm >ranlib libccif.a >cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a >cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib >if (test -f libccif.so); then \ > cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \ > fi >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm >if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4; fi > cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_file_err.h > cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_program.h > cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_unitcell.h > cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_errno.h > cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_stats.h > cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/csymlib.h > cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_file.h > cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/w32mvs.h > cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_fortran.h > cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_spg.h > cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_utils.h > cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_header.h > cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib.h > cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cvecmat.h > cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/mtzdata.h > cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_array.h > cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_general.h > cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_sysdep.h > cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_vars.h > cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_labels.h > cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmaplib_f.h > cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/overview.h > cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_errno.h > cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_parser.h > cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/ccp4_types.h > cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_data.h > cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmap_skew.h > cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/cmtzlib.h > cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//include/ccp4/library_f.h >ranlib ./libccp4c.a >ranlib ./libccp4f.a >cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a >cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a >cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; >cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF ".deps/ssm_superpose.Tpo" -c -o ssm_superpose.lo ssm_superpose.cpp; \ >then mv -f ".deps/ssm_superpose.Tpo" ".deps/ssm_superpose.Plo"; else rm -f ".deps/ssm_superpose.Tpo"; exit 1; fi >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -fPIC -DPIC -o .libs/ssm_superpose.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -o ssm_superpose.o >/dev/null 2>&1 >if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF ".deps/ss_csia.Tpo" -c -o ss_csia.lo ss_csia.cpp; \ >then mv -f ".deps/ss_csia.Tpo" ".deps/ss_csia.Plo"; else rm -f ".deps/ss_csia.Tpo"; exit 1; fi > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -fPIC -DPIC -o .libs/ss_csia.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -o ss_csia.o >/dev/null 2>&1 >if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF ".deps/ss_vxedge.Tpo" -c -o ss_vxedge.lo ss_vxedge.cpp; \ >then mv -f ".deps/ss_vxedge.Tpo" ".deps/ss_vxedge.Plo"; else rm -f ".deps/ss_vxedge.Tpo"; exit 1; fi > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -fPIC -DPIC -o .libs/ss_vxedge.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -o ss_vxedge.o >/dev/null 2>&1 >if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF ".deps/ssm_align.Tpo" -c -o ssm_align.lo ssm_align.cpp; \ >then mv -f ".deps/ssm_align.Tpo" ".deps/ssm_align.Plo"; else rm -f ".deps/ssm_align.Tpo"; exit 1; fi > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -fPIC -DPIC -o .libs/ssm_align.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -o ssm_align.o >/dev/null 2>&1 >if /bin/sh ./libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF ".deps/ss_graph.Tpo" -c -o ss_graph.lo ss_graph.cpp; \ >then mv -f ".deps/ss_graph.Tpo" ".deps/ss_graph.Plo"; else rm -f ".deps/ss_graph.Tpo"; exit 1; fi > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -fPIC -DPIC -o .libs/ss_graph.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -o ss_graph.o >/dev/null 2>&1 >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb -o libssm.la -rpath /usr/lib ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtbeginS.o .libs/ssm_superpose.o .libs/ss_csia.o .libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src /usr/lib/libmmdb.so -L/opt/intel/Compiler/11.1/072/lib/ia32 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.5.1/../../../crtn.o -Wl,-soname -Wl,libssm.so.0 -o .libs/libssm.so.0.0.0 >(cd .libs && rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0) >(cd .libs && rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so) >ar cru .libs/libssm.a ssm_superpose.o ss_csia.o ss_vxedge.o ssm_align.o ss_graph.o >ranlib .libs/libssm.a >creating libssm.la >(cd .libs && rm -f libssm.la && ln -s ../libssm.la libssm.la) >if i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"keb@ebi.ac.uk\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/mmdb -O2 -pipe -fPIC -MT superpose.o -MD -MP -MF ".deps/superpose.Tpo" -c -o superpose.o superpose.cpp; \ >then mv -f ".deps/superpose.Tpo" ".deps/superpose.Po"; else rm -f ".deps/superpose.Tpo"; exit 1; fi >/bin/sh ./libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src -lmmdb -o superpose superpose.o libssm.la -lm >i686-pc-linux-gnu-g++ -O2 -pipe -fPIC -o .libs/superpose superpose.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src ./.libs/libssm.so /usr/lib/libmmdb.so -lm >creating superpose >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la' >/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; }) >/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la >/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' >test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" > /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose' >cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose >test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm" > cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_graph.h' > cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_superpose.h' > cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_csia.h' > cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ss_vxedge.h' > cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/include/ssm/ssm/ssm_align.h' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >gfortran -O2 -pipe -fno-second-underscore -fno-stack-protector -fPIC -o fontpack /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/fontpack.f -L../src -L/usr/lib -lccp4f -lccp4c -lmmdb -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif -lccif -L/usr/lib -llapack -lstdc++ -lm >rm -f font84.dat >test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii . >LD_LIBRARY_PATH="../src:../ccif" ./fontpack >cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3' >if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/clipper/clipper; \ >make -i ; else true; fi >if test -n "lib/ssm"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm; \ >make -i ; else true; fi >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[1]: Nothing to be done for `all'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >if test -n "lib/DiffractionImage"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage; \ >make -i ; else true; fi >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >Making all in Bruker >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >Making all in MAR >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >Making all in Rigaku >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Nothing to be done for `all-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >cd lib/data; make font84.dat >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >make[1]: Nothing to be done for `font84.dat'. >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >>>> Source compiled. >>>> Test phase [none]: sci-libs/ccp4-libs-6.1.3-r3 > >>>> Install ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ category sci-libs >make -j14 -j1 DESTDIR=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ includedir=/usr/include library_includedir=/usr/include install >for i in lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ccp4i ; do (if test -f $i/Makefile; then \ > if test $i = x-windows; then \ > cd $i; make -i install; \ > else cd $i; make install; fi; \ >else true; fi) ; done >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >Making install in Bruker >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Bruker' >Making install in MAR >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/MAR' >Making install in Rigaku >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage/Rigaku' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >test -z "/usr/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la' >/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.la >/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la' >/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; }) >/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.la >/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/lib_DiffractionImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la' >/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; }) >/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.la >/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImage.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la' >/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; }) >/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.la >/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libDiffractionImaJ.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' >test -z "/usr/libexec/ccp4/bin/" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" > /bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask' >cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//automask > /bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump' >cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diffdump > /bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks' >cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//printpeaks > /bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg' >cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//diff2jpeg >cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/doc >cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/html >cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/share/python >make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/DiffractionImage' >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >if test -f /librx.a; then \ > rm -rf rx.dir; mkdir rx.dir; \ > echo 'rxdispencer routines being added to library'; \ > cp /librx.a rx.dir; cd rx.dir; \ > ar -x librx.a; cd ..; \ > ar r libccif.a rx.dir/*.o; \ > ranlib libccif.a; rm -rf rx.dir; \ >fi >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname -Wl,libccif.so condition.o star_map.o ccif_unix.o sym.o sorlist.o star_scan.o star_err.o value_manip.o context.o struct_manip.o f_interface.o star_walk.o star_print.o star_graph.o lib_dict2tab.o sort.o list.o rb.o -o libccif.so -lm >i686-pc-linux-gnu-gcc -O2 -pipe -DGFORTRAN -DPROTOTYPE -fPIC -ansi -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1 -I. -o cifdic_to_symtab cifdic_to_symtab.o -lm -L`pwd` -lccif -lm > >Building symbol table: >LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib:/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out >Loading dictionary....dictionary loaded. >Starting first tree walk....tree walk completed. >Starting second tree walk....tree walk completed. >Grouping items in their categories....done >Dumping symbol table....symbol table dumped. >ranlib libccif.a >cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.a >cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/cif_mmdic.lib >if (test -f libccif.so); then \ > cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccif.so; \ > fi >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ccif' >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4c.so -o libccp4c.so library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o -L../ccif/ -lccif -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lm && gfortran -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -shared -Wl,-soname,libccp4f.so -o libccp4f.so cciflib.dir/*.o ccplib.dir/*.o dna_output.dir/*.o fftlib.dir/*.o harvlib.dir/*.o keyparse.dir/*.o lgglib.dir/*.o libhtml.dir/*.o modlib.dir/*.o parser.dir/*.o plot84lib.dir/*.o plotsubs.dir/*.o pxxml.dir/*.o rwbrook.dir/*.o unix.dir/*.o pack_f.o pack_c.o cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o -L../ccif/ -lccif -L. -lccp4c -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.5.1 -lstdc++ -lgfortran -lm >if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; then mkdir -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4; fi > cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_file_err.h > cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_program.h > cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_unitcell.h > cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_errno.h > cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_stats.h > cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/csymlib.h > cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_file.h > cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/w32mvs.h > cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_fortran.h > cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_spg.h > cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_utils.h > cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_header.h > cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib.h > cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cvecmat.h > cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/mtzdata.h > cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_array.h > cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_general.h > cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_sysdep.h > cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_vars.h > cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_labels.h > cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmaplib_f.h > cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/overview.h > cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_errno.h > cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_parser.h > cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/ccp4_types.h > cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_data.h > cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmap_skew.h > cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/cmtzlib.h > cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ccp4/library_f.h >ranlib ./libccp4c.a >ranlib ./libccp4f.a >cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4c.a >cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/./libccp4f.a >cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/libccp4f.so; >cp: cannot stat `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/src' >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >test -z "/usr/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib" > /bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la' >/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.so.0.0.0 >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; }) >(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; }) >/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.la >/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/lib/libssm.a >libtool: install: warning: remember to run `libtool --finish /usr/lib' >test -z "/usr/libexec/ccp4/bin/" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin/" > /bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose' >cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/libexec/ccp4/bin//superpose >test -z "/usr/include" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm" > cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_graph.h' > cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_superpose.h' > cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_csia.h' > cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ss_vxedge.h' > cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image//usr/include/ssm/ssm_align.h' >make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/ssm' >make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >rm -f font84.dat >test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data/font84.ascii . >LD_LIBRARY_PATH="../src:../ccif" ./fontpack >cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image///usr/lib/font84.dat >make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/work/ccp4-6.1.3/lib/data' >>>> Completed installing ccp4-libs-6.1.3-r3 into /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r3/image/ > >Fixing .la files > usr/lib/libDiffractionImage.la > usr/lib/libssm.la > usr/lib/libDiffractionImaJ.la > usr/lib/lib_DiffractionImage.la >strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment > usr/libexec/ccp4/bin/diff2jpeg > usr/libexec/ccp4/bin/printpeaks > usr/libexec/ccp4/bin/diffdump > usr/libexec/ccp4/bin/superpose > usr/libexec/ccp4/bin/automask > usr/lib/lib_DiffractionImage.so.0.0.0 > usr/lib/libDiffractionImaJ.so.0.0.0 > usr/lib/libDiffractionImage.so.0.0.0 > usr/lib/libssm.so.0.0.0 > usr/lib/libccp4f.so > usr/lib/libccp4c.so > usr/lib/libccif.so > usr/lib/lib_DiffractionImage.a > usr/lib/libccif.a > usr/lib/libccp4c.a > usr/lib/libDiffImage.a > usr/lib/libDiffractionImage.a > usr/lib/libccp4f.a > usr/lib/libDiffractionImaJ.a > usr/lib/libssm.a >removing executable bit: usr/lib/libDiffImage.la >removing executable bit: usr/lib/lib_DiffractionImage.la >removing executable bit: usr/lib/libDiffractionImage.la >removing executable bit: usr/lib/libDiffractionImaJ.la >removing executable bit: usr/lib/libssm.la > > * QA Notice: Package has poor programming practices which may compile > * fine but exhibit random runtime failures. > * /usr/include/bits/string3.h:123:3: warning: call to __builtin___strncpy_chk will always overflow destination buffer > > * Please do not file a Gentoo bug and instead report the above QA > * issues directly to the upstream developers of this software. > * Homepage: http://www.ccp4.ac.uk/
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: 249544