Attachment #218587 for bug #297193

Lines 547-553 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/build-system/Makefile.mk.in (-1 / +1 lines)
547	#################################	547	#################################
548	# Useful sets of object libraries	548	# Useful sets of object libraries
549	# Interdependent sequence libraries + seqcode. Does not include seqset.	549	# Interdependent sequence libraries + seqcode. Does not include seqset.
550	COMPRESS_LDEP = $(CMPRS_LIB)	550	COMPRESS_LDEP = $(CMPRS_LIB) xutil xncbi
551	COMPRESS_LIBS = xcompress $(COMPRESS_LDEP)	551	COMPRESS_LIBS = xcompress $(COMPRESS_LDEP)
552		552
553	GENBANK_LDEP = \	553	GENBANK_LDEP = \

Lines 4-10 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/util/compress/Makefile.compress.lib (-2 / +2 lines)
4		4
5	LIB = xcompress	5	LIB = xcompress
6		6
7	DLL_LIB =	7	DLL_LIB = $(COMPRESS_LDEP)
8	#$(COMPRESS_LDEP)	8	LIBS = $(CMPRS_LIBS)
9	CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)	9	CPPFLAGS = $(ORIG_CPPFLAGS) $(CMPRS_INCLUDE)

Lines 17-19 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/serial/Makefile.serial.lib (+2 lines)
17	objostrjson serializable serialobject pathhook	17	objostrjson serializable serialobject pathhook
18		18
19	LIB = xser	19	LIB = xser
		20
		21	DLL_LIB = xutil xncbi

Lines 12-15 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib (-1 / +1 lines)
12	LIB_OR_DLL = both	12	LIB_OR_DLL = both
13		13
14	# Dependencies for shared library	14	# Dependencies for shared library
15	DLL_LIB =	15	DLL_LIB = xcompress

Lines 8-11 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objtools/readers/Makefile.xobjread.lib (-1 / +1 lines)
8	wiggle_reader wiggle_data gff3_reader \	8	wiggle_reader wiggle_data gff3_reader \
9	ucscid idmap idmapper idmapper_builtin idmapper_user idmapper_site \	9	ucscid idmap idmapper idmapper_builtin idmapper_user idmapper_site \
10	idmapper_database	10	idmapper_database
11	DLL_LIB = creaders	11	DLL_LIB = creaders seq seqset

Lines 10-12 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/seq/Makefile.seq.lib (+2 lines)
10	SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \	10	SRC = $(ASN:%=%__) $(ASN:%=%___) seqport_util \
11	seq_id_tree seq_id_handle seq_id_mapper \	11	seq_id_tree seq_id_handle seq_id_mapper \
12	seq_loc_mapper_base seq_align_mapper_base	12	seq_loc_mapper_base seq_align_mapper_base
		13
		14	DLL_LIB = biblio general pub seqcode sequtil xncbi

Lines 1-2 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/pub/Makefile.pub.lib (+2 lines)
1	LIB = pub	1	LIB = pub
2	SRC = pub__ pub___	2	SRC = pub__ pub___
		3
		4	DLL_LIB = medline

Lines 1-2 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/general/Makefile.general.lib (+2 lines)
1	LIB = general	1	LIB = general
2	SRC = general__ general___ uoconv	2	SRC = general__ general___ uoconv
		3
		4	DLL_LIB = xsoap xser

Lines 2-4 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/omssa/Makefile.omssa.lib (+2 lines)
2		2
3	LIB = omssa	3	LIB = omssa
4	SRC = omssa__ omssa___	4	SRC = omssa__ omssa___
		5
		6	DLL_LIB = seq

Lines 73-79 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/algo/blast/api/Makefile.xblast.lib (-1 / +2 lines)
73		73
74	LIB = xblast	74	LIB = xblast
75		75
76	DLL_LIB = xalgodustmask xobjutil $(OBJMGR_LIBS)	76	DLL_LIB = xalgodustmask xalgowinmask xobjutil xnetblast xnetblastcli blastdb composition_adjustment \
		77	blast tables xalgoblastdbindex_search xalgoblastdbindex $(OBJMGR_LIBS)
77		78
78	CFLAGS = $(FAST_CFLAGS)	79	CFLAGS = $(FAST_CFLAGS)
79	# Strict gcc flags	80	# Strict gcc flags

Lines 12-14 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib (+1 lines)
12	LDFLAGS = $(FAST_LDFLAGS)	12	LDFLAGS = $(FAST_LDFLAGS)
13		13
14	ASN_DEP = seqset	14	ASN_DEP = seqset
		15	DLL_LIB = xobjread

Lines 1-2 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/biblio/Makefile.biblio.lib (+2 lines)
1	LIB = biblio	1	LIB = biblio
2	SRC = biblio__ biblio___ label_util	2	SRC = biblio__ biblio___ label_util
		3
		4	DLL_LIB = general

Lines 1-2 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/medline/Makefile.medline.lib (+2 lines)
1	LIB = medline	1	LIB = medline
2	SRC = medline__ medline___	2	SRC = medline__ medline___
		3
		4	DLL_LIB = biblio

Lines 5-12 Link Here

(-)ncbi_cxx--May_15_2009.orig/src/objects/Makefile.in (-2 / +2 lines)
5		5
6	USR_PROJ = sources	6	USR_PROJ = sources
7		7
8	SUB_PROJ = tinyseq omssa general biblio medline pub pubmed \	8	SUB_PROJ = tinyseq general biblio medline pub pubmed \
9	featdef seqcode seqset seq genomecoll biotree \	9	featdef seqcode seqset seq omssa genomecoll biotree \
10	id1 id2 gbseq insdseq entrez2 submit medlars mla proj mmdb \	10	id1 id2 gbseq insdseq entrez2 submit medlars mla proj mmdb \
11	cdd cn3d scoremat ncbimime access objprt docsum taxon1 mim \	11	cdd cn3d scoremat ncbimime access objprt docsum taxon1 mim \
12	entrezgene blast blastdb blastxml pcsubstance pcassay remap \	12	entrezgene blast blastdb blastxml pcsubstance pcassay remap \

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