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Bug 954365 - sci-visualization/labplot-2.11.1[-hdf5,netcdf] w/ sci-libs/netcdf[hdf5](?): ld: cannot find -lhdf5_hl-shared: No such file or directory
Summary: sci-visualization/labplot-2.11.1[-hdf5,netcdf] w/ sci-libs/netcdf[hdf5](?): l...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Andreas K. Hüttel
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: 954378
  Show dependency tree
 
Reported: 2025-04-24 18:42 UTC by Toralf Förster
Modified: 2025-04-25 06:46 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.94 KB, text/plain)
2025-04-24 18:42 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,86.95 KB, text/plain)
2025-04-24 18:42 UTC, Toralf Förster
Details
environment (environment,93.93 KB, text/plain)
2025-04-24 18:42 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.61 KB, application/x-xz)
2025-04-24 18:42 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,26.06 KB, application/x-xz)
2025-04-24 18:42 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,111.43 KB, application/x-xz)
2025-04-24 18:42 UTC, Toralf Förster
Details
qlist-info.txt (qlist-info.txt,193.00 KB, text/plain)
2025-04-24 18:42 UTC, Toralf Förster
Details
sci-visualization:labplot-2.11.1:20250424-155449.log.xz (sci-visualization:labplot-2.11.1:20250424-155449.log.xz,39.52 KB, application/x-xz)
2025-04-24 18:42 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,22.42 KB, application/x-xz)
2025-04-24 18:42 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2025-04-24 18:42:37 UTC
too long lines were shrinked:

Note: Writing labplot2.1
[575/578] cd /var/tmp/portage/sci-visualization/labplot-2.11.1/work/labplot-2.11.1 && /usr/bin/meinproc6 --check --cache /var/tmp/portage/sci-visualization/labplot-2.11.1/work/labplot-2.11.1_build/po/uk/docs/labplot2/index.cache.bz2 po/uk/docs/labplot2/index.docbook
[576/578] cd /var/tmp/portage/sci-visualization/labplot-2.11.1/work/labplot-2.11.1/doc && /usr/bin/meinproc6 --check --cache /var/tmp/portage/sci-visualization/labplot-2.11.1/work/labplot-2.11.1_build/doc//index.cache.bz2 index.docbook
[577/578] : && /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fno-diagnostics-color -fno-operator-names -fno-exceptions -Wall -Wextra -Wcast-align -Wchar-subscripts -Wformat-security -Wno-long-long -Wpointer-arith -Wundef -Wnon-virtual-dtor -Woverloaded-virtual -Werror=return-type -Werror
FAILED: bin/labplot2 
: && /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fno-diagnostics-color -fno-operator-names -fno-exceptions -Wall -Wextra -Wcast-align -Wchar-subscripts -Wformat-security -Wno-long-long -Wpointer-arith -Wundef -Wnon-virtual-dtor -Woverloaded-virtual -Werror=return-type -Werror=init-self
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lhdf5_hl-shared: No such file or directory
/usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lhdf5-shared: No such file or directory
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------
  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_plasma_systemd-20250422-100003

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-14 *
clang version 20.1.3
llvm-config: 20.1.3
Python 3.12.10
go version go1.24.2 linux/amd64
Available Ruby profiles:
  [1]   ruby32 (with Rubygems)
  [2]   ruby34 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.86.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 21.0.6_p7 [openjdk-bin-21]
Available Java Virtual Machines:
  [1]   openjdk-bin-21  system-vm

  HEAD of ::gentoo
commit 766314ec7d87993a233f97bf79d4daf3094ca3be
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Apr 24 14:50:23 2025 +0000

    2025-04-24 14:50:23 UTC

The tinderbox task was: sci-visualization/labplot

emerge -qpvO =sci-visualization/labplot-2.11.1
[ebuild  N    ] sci-visualization/labplot-2.11.1  USE="handbook netcdf -debug -eigen -fftw -fits -hdf5 -libcerf -markdown -matio -ods -origin -root -serial -share -telemetry -test -xlsx"
Comment 1 Toralf Förster gentoo-dev 2025-04-24 18:42:38 UTC
Created attachment 926126 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2025-04-24 18:42:39 UTC
Created attachment 926127 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2025-04-24 18:42:40 UTC
Created attachment 926128 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2025-04-24 18:42:41 UTC
Created attachment 926129 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2025-04-24 18:42:42 UTC
Created attachment 926130 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2025-04-24 18:42:43 UTC
Created attachment 926131 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2025-04-24 18:42:45 UTC
Created attachment 926132 [details]
qlist-info.txt
Comment 8 Toralf Förster gentoo-dev 2025-04-24 18:42:46 UTC
Created attachment 926133 [details]
sci-visualization:labplot-2.11.1:20250424-155449.log.xz
Comment 9 Toralf Förster gentoo-dev 2025-04-24 18:42:47 UTC
Created attachment 926134 [details]
temp.tar.xz
Comment 10 Andreas Sturmlechner gentoo-dev 2025-04-24 19:30:48 UTC
Interesting.

From emerge-history.txt:
> 2025-04-24T14:29:44 >>> sci-libs/hdf5-1.14.6-r1
> 2025-04-24T14:30:53 >>> sci-libs/netcdf-4.9.2-r1

Presumably that is leaking into the build from sci-libs/netcdf[hdf5] - also, presumably, since sci-libs/hdf5-1.14.6 version bump.