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Bug 951722 - sci-chemistry/gromacs-2025.1 - [gcc-15] sandbox issue
Summary: sci-chemistry/gromacs-2025.1 - [gcc-15] sandbox issue
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2025-03-21 17:13 UTC by Toralf Förster
Modified: 2025-03-21 17:14 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.33 KB, text/plain)
2025-03-21 17:13 UTC, Toralf Förster
Details
CMakeCache.txt (CMakeCache.txt,67.05 KB, text/plain)
2025-03-21 17:14 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,236.30 KB, text/plain)
2025-03-21 17:14 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.35 KB, application/x-xz)
2025-03-21 17:14 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,38.61 KB, application/x-xz)
2025-03-21 17:14 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,167.28 KB, application/x-xz)
2025-03-21 17:14 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,56.46 KB, application/x-xz)
2025-03-21 17:14 UTC, Toralf Förster
Details
sandbox.log (sandbox.log,546 bytes, text/plain)
2025-03-21 17:14 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2025.1:20250321-164153.log.xz (sci-chemistry:gromacs-2025.1:20250321-164153.log.xz,47.63 KB, application/x-xz)
2025-03-21 17:14 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2025-03-21 17:13:58 UTC
==> /var/tmp/portage/sci-chemistry/gromacs-2025.1/temp/sandbox.log <==
VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: open_wr
S: deny
P: /proc/mtrr
A: /proc/mtrr
R: /proc/mtrr
C: /var/tmp/portage/sci-chemistry/gromacs-2025.1/work/gromacs-2025.1_float/bin/gmx -quiet help -export completion 

F: open_wr
S: deny
P: /proc/mtrr
A: /proc/mtrr
R: /proc/mtrr

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_no_multilib_hardened_systemd-20250317-083502

  KEYWORDED/UNMASKED

  [gcc-15] Requested by sam
  <sys-devel/gcc-15.0.9999:15

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang version 20.1.0
llvm-config: 20.1.0
Python 3.12.9
go version go1.24.1 linux/amd64
Available Ruby profiles:
  [1]   ruby32 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.85.0
  [2]   rust-bin-1.85.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.26_p4 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.14_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.6_p7 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.442_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm


  HEAD of ::gentoo
commit 3caf8aea13a95a8cd30d7f152502edff90ab42e7
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Mar 21 15:20:17 2025 +0000

    2025-03-21 15:20:17 UTC

emerge -qpvO =sci-chemistry/gromacs-2025.1
[ebuild  N    ] sci-chemistry/gromacs-2025.1  USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang -clang-cuda -cuda -double-precision -lapack -mkl -mpi -nnpot -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_12 -python3_11"
Comment 1 Toralf Förster gentoo-dev 2025-03-21 17:13:58 UTC
Created attachment 921571 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2025-03-21 17:14:00 UTC
Created attachment 921572 [details]
CMakeCache.txt
Comment 3 Toralf Förster gentoo-dev 2025-03-21 17:14:01 UTC
Created attachment 921573 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2025-03-21 17:14:02 UTC
Created attachment 921574 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2025-03-21 17:14:03 UTC
Created attachment 921575 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2025-03-21 17:14:04 UTC
Created attachment 921576 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2025-03-21 17:14:05 UTC
Created attachment 921577 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2025-03-21 17:14:06 UTC
Created attachment 921578 [details]
sandbox.log
Comment 9 Toralf Förster gentoo-dev 2025-03-21 17:14:07 UTC
Created attachment 921579 [details]
sci-chemistry:gromacs-2025.1:20250321-164153.log.xz