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Bug 951567 - sci-biology/wise: tree clean request
Summary: sci-biology/wise: tree clean request
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2025-03-18 19:54 UTC by NHO
Modified: 2025-03-18 20:00 UTC (History)
2 users (show)

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Package list:
Runtime testing required: ---


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Description NHO 2025-03-18 19:54:51 UTC
sci-biology/wise is dead package with very dead upsteram.
It has bundled version of HMMER2 that fails to compile
https://bugs.gentoo.org/946406
It can't be unbundled and switched to in-tree HMMER2, because it uses functions removed from hmmer-2.3.2
Build system is of horrible quality
https://bugs.gentoo.org/809725
https://bugs.gentoo.org/741202
https://bugs.gentoo.org/652030
And of course, it has multiple bugs, reported only by tinderboxes, and it fails to build
https://bugs.gentoo.org/883891
https://bugs.gentoo.org/886065
https://bugs.gentoo.org/625808

Reproducible: Always
Comment 1 NHO 2025-03-18 20:00:08 UTC
Oh, and I'm not sure if slapping -std=gnu17 would help, this system has per-directory CFLAGS with includes, well, included.