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Bug 946372 - sci-chemistry/gromacs-2025.0_beta - [texlive] convert: MagickCore/string.c:1200: GetStringInfoDatum: Assertion string_info->signature == MagickCoreSignature failed.
Summary: sci-chemistry/gromacs-2025.0_beta - [texlive] convert: MagickCore/string.c:12...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-12-13 15:00 UTC by Toralf Förster
Modified: 2025-02-24 10:33 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.29 KB, text/plain)
2024-12-13 15:00 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,133.96 KB, text/plain)
2024-12-13 15:00 UTC, Toralf Förster
Details
environment (environment,194.14 KB, text/plain)
2024-12-13 15:00 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.21 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,18.73 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,110.30 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,39.86 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2025.0_beta:20241213-092636.log.xz (sci-chemistry:gromacs-2025.0_beta:20241213-092636.log.xz,44.86 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,41.14 KB, application/x-xz)
2024-12-13 15:00 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2024-12-13 15:00:17 UTC
too long lines were shrinked:


[384/433] cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs && /usr/bin/convert /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0-beta/docs/reference-manual/functions/plots/dummies.pdf -antialias -quality 03 -quiet -pointsize 12 -density 1
FAILED: docs/sphinx-input/reference-manual/functions/plots/dummies.png /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs/sphinx-input/reference-manual/functions/plots/dummies.png 
cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs && /usr/bin/convert /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0-beta/docs/reference-manual/functions/plots/dummies.pdf -antialias -quality 03 -quiet -pointsize 12 -density 1200 -units
WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert"

convert: MagickCore/string.c:1200: GetStringInfoDatum: Assertion `string_info->signature == MagickCoreSignature' failed.
[385/433] cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs && /usr/bin/convert /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0-beta/docs/reference-manual/functions/plots/f-bham.pdf -antialias -quality 03 -quiet -pointsize 12 -density 12
WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert"

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_systemd-20241211-002002

  UNMASKED:
  >=app-text/dvisvgm-2024
  >=app-text/ps2pkm-1.8_p20240311
  >=app-text/texlive-2024
  >=app-text/texlive-core-2024
  >=dev-libs/kpathsea-6.4.0
  >=dev-libs/ptexenc-1.4.6
  dev-python/latexrestricted
  >=dev-tex/biber-2.20
  >=dev-tex/biblatex-3.20
  >=dev-tex/bibtexu-3.72_p20240311
  >=dev-tex/glossaries-4.55
  dev-tex/latex2pydata
  >=dev-tex/latexmk-4.85
  >=dev-tex/minted-3.4.0
  >=dev-tex/tex4ht-20240311
  >=dev-texlive/texlive-basic-2024
  >=dev-texlive/texlive-bibtexextra-2024
  >=dev-texlive/texlive-binextra-2024
  >=dev-texlive/texlive-context-2024
  >=dev-texlive/texlive-fontsextra-2024
  >=dev-texlive/texlive-fontsrecommended-2024
  >=dev-texlive/texlive-fontutils-2024
  >=dev-texlive/texlive-formatsextra-2024
  >=dev-texlive/texlive-games-2024
  >=dev-texlive/texlive-humanities-2024
  >=dev-texlive/texlive-langarabic-2024
  >=dev-texlive/texlive-langchinese-2024
  >=dev-texlive/texlive-langcjk-2024
  >=dev-texlive/texlive-langcyrillic-2024
  >=dev-texlive/texlive-langczechslovak-2024
  >=dev-texlive/texlive-langenglish-2024
  >=dev-texlive/texlive-langeuropean-2024
  >=dev-texlive/texlive-langfrench-2024
  >=dev-texlive/texlive-langgerman-2024
  >=dev-texlive/texlive-langgreek-2024
  >=dev-texlive/texlive-langitalian-2024
  >=dev-texlive/texlive-langjapanese-2024
  >=dev-texlive/texlive-langkorean-2024
  >=dev-texlive/texlive-langother-2024
  >=dev-texlive/texlive-langpolish-2024
  >=dev-texlive/texlive-langportuguese-2024
  >=dev-texlive/texlive-langspanish-2024
  >=dev-texlive/texlive-latex-2024
  >=dev-texlive/texlive-latexextra-2024
  >=dev-texlive/texlive-latexrecommended-2024
  >=dev-texlive/texlive-luatex-2024
  >=dev-texlive/texlive-mathscience-2024
  >=dev-texlive/texlive-metapost-2024
  >=dev-texlive/texlive-music-2024
  >=dev-texlive/texlive-pictures-2024
  >=dev-texlive/texlive-plaingeneric-2024
  >=dev-texlive/texlive-pstricks-2024
  >=dev-texlive/texlive-publishers-2024
  >=dev-texlive/texlive-xetex-2024

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-14 *
clang version 19.1.5
llvm-config: 19.1.5
Python 3.12.8
go version go1.23.4 linux/amd64
  [1]   php8.2
  [2]   php8.3 *
Available Ruby profiles:
  [1]   ruby32 (with Rubygems)
  [2]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.77.1
  [2]   rust-bin-1.81.0
  [3]   rust-bin-1.83.0
  [4]   rust-1.83.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.13_p11 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.5_p11 [openjdk-bin-21]
Available Java Virtual Machines:
  [1]   openjdk-bin-17 
  [2]   openjdk-bin-21  system-vm


  HEAD of ::gentoo
commit d612f0ec087156ec7f2d7514243820b5270c11a2
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Dec 13 08:33:34 2024 +0000

    2024-12-13 08:33:34 UTC

emerge -qpvO =sci-chemistry/gromacs-2025.0_beta
[ebuild  N    ] sci-chemistry/gromacs-2025.0_beta  USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang -clang-cuda -cuda -double-precision -lapack -mkl -mpi -nnpot -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_12 -python3_10 -python3_11"
Comment 1 Toralf Förster gentoo-dev 2024-12-13 15:00:18 UTC
Created attachment 913933 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-12-13 15:00:19 UTC
Created attachment 913934 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2024-12-13 15:00:21 UTC
Created attachment 913935 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-12-13 15:00:21 UTC
Created attachment 913936 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-12-13 15:00:22 UTC
Created attachment 913937 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-12-13 15:00:24 UTC
Created attachment 913938 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-12-13 15:00:25 UTC
Created attachment 913939 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-12-13 15:00:26 UTC
Created attachment 913940 [details]
sci-chemistry:gromacs-2025.0_beta:20241213-092636.log.xz
Comment 9 Toralf Förster gentoo-dev 2024-12-13 15:00:27 UTC
Created attachment 913941 [details]
temp.tar.xz
Comment 10 Alexey Shvetsov archtester gentoo-dev 2025-02-24 10:33:22 UTC
Should be fixed by 2025.0