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Bug 946230 - sci-chemistry/gromacs-2025.0_beta - [gcc-15] Could not import extension sphinx_inline_tabs (exception: No module named sphinx_inline_tabs)
Summary: sci-chemistry/gromacs-2025.0_beta - [gcc-15] Could not import extension sphin...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-12-10 21:07 UTC by Toralf Förster
Modified: 2024-12-13 12:11 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.48 KB, text/plain)
2024-12-10 21:07 UTC, Toralf Förster
Details
emerge-history.txt.xz (emerge-history.txt.xz,86.79 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
environment (environment,193.86 KB, text/plain)
2024-12-10 21:07 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.21 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,40.16 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,110.29 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,90.43 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2025.0_beta:20241210-201932.log.xz (sci-chemistry:gromacs-2025.0_beta:20241210-201932.log.xz,45.02 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,41.42 KB, application/x-xz)
2024-12-10 21:07 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2024-12-10 21:07:35 UTC
too long lines were shrinked:

[222/223] cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs/sphinx-input && /usr/bin/cmake -E make_directory onlinehelp && /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/bin/gmx -quiet help -export rst
[223/223] cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs && /usr/bin/sphinx-build -q -b man -w sphinx-man.log -d /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs/_man_doctrees -t do_man /var/tmp/portage/sci-chemistry/gr
FAILED: docs/CMakeFiles/man /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs/CMakeFiles/man 
cd /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs && /usr/bin/sphinx-build -q -b man -w sphinx-man.log -d /var/tmp/portage/sci-chemistry/gromacs-2025.0_beta/work/gromacs-2025.0_beta_float/docs/_man_doctrees -t do_man /var/tmp/portage/sci-chemistry/gromacs-2025

Extension error:
Could not import extension sphinx_inline_tabs (exception: No module named 'sphinx_inline_tabs')
ninja: build stopped: subcommand failed.
 * ERROR: sci-chemistry/gromacs-2025.0_beta::gentoo failed (compile phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0-20241201-015002

  UNMASKED:
  <sys-devel/gcc-15.0.9999:15

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang version 19.1.5
llvm-config: 19.1.5
Python 3.12.7
go version go1.23.4 linux/amd64
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-bin-1.71.1
  [2]   rust-bin-1.81.0
  [3]   rust-bin-1.82.0
  [4]   rust-bin-1.83.0
  [5]   rust-1.83.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.25_p9 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.13_p11 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.5_p11 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.432_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm


  HEAD of ::gentoo
commit c87f4b43bad3d57aa1d2de9c5889fd2b0910cb50
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Dec 10 19:03:53 2024 +0000

    2024-12-10 19:03:53 UTC

emerge -qpvO =sci-chemistry/gromacs-2025.0_beta
[ebuild  N    ] sci-chemistry/gromacs-2025.0_beta  USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang -clang-cuda -cuda -double-precision -lapack -mkl -mpi -nnpot -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_12 -python3_10 -python3_11"
Comment 1 Toralf Förster gentoo-dev 2024-12-10 21:07:36 UTC
Created attachment 913768 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-12-10 21:07:37 UTC
Created attachment 913769 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-12-10 21:07:38 UTC
Created attachment 913770 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-12-10 21:07:39 UTC
Created attachment 913771 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-12-10 21:07:40 UTC
Created attachment 913772 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-12-10 21:07:41 UTC
Created attachment 913773 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-12-10 21:07:42 UTC
Created attachment 913774 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-12-10 21:07:44 UTC
Created attachment 913775 [details]
sci-chemistry:gromacs-2025.0_beta:20241210-201932.log.xz
Comment 9 Toralf Förster gentoo-dev 2024-12-10 21:07:45 UTC
Created attachment 913776 [details]
temp.tar.xz
Comment 10 Alexey Shvetsov archtester gentoo-dev 2024-12-13 12:11:36 UTC
Fixed by 

commit 8aef8082283167d6efba9d44cdf35d9f20942f7d
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date:   Thu Dec 12 14:16:51 2024 +0300

    sci-chemistry/gromacs: Update deps for man/help build

    Closes: https://bugs.gentoo.org/946229
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>