First of all, latest proteinpredictor versions don't work with boinc which is in portage. Please upgrade the ebuild to use the current public_cvs snapshot and wxwindows 2.6. This will be boinc-4.42.ebuild Secondly, you may want to modify the metadata.xml: it refers to "quickplot."
I have fixed the metadata file - sorry about that, you caught me using an existing metadata.xml I created as a template. I have been testing a few of the snapshots and they are failing to compile the gui for me here. Which snapshot are you using? I can build fine without the GUI, but not with.
hmm, just tried to use the recent snapshot with the gui and it also failed. Looks like we'll have to wait on upstream for this one.
See bug #91930 it has an updated ebuild for boinc 4.45
Boinc 4.72 is now in Portage.