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Bug 936115 - dev-python/mpi4py-3.1.5 - [perl-5.40] [icu-75.1] /.../ld: .../libmpi.so: undefined reference to mca_common_sm_fini
Summary: dev-python/mpi4py-3.1.5 - [perl-5.40] [icu-75.1] /.../ld: .../libmpi.so: unde...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alex Fan
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: c99-porting
  Show dependency tree
 
Reported: 2024-07-15 17:42 UTC by Toralf Förster
Modified: 2024-07-15 17:42 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.06 KB, text/plain)
2024-07-15 17:42 UTC, Toralf Förster
Details
dev-python:mpi4py-3.1.5:20240714-223902.log (dev-python:mpi4py-3.1.5:20240714-223902.log,37.62 KB, text/plain)
2024-07-15 17:42 UTC, Toralf Förster
Details
emerge-history.txt.xz (emerge-history.txt.xz,59.99 KB, application/x-xz)
2024-07-15 17:42 UTC, Toralf Förster
Details
environment (environment,162.10 KB, text/plain)
2024-07-15 17:42 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.20 KB, application/x-xz)
2024-07-15 17:42 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,48.33 KB, application/x-xz)
2024-07-15 17:42 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,67.12 KB, application/x-xz)
2024-07-15 17:42 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,37.09 KB, application/x-xz)
2024-07-15 17:42 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2024-07-15 17:42:41 UTC
too long lines were shrinked:

2024-07-14 22:39:10,842 root INFO checking for MPI compile and link ...
2024-07-14 22:39:10,843 root INFO /usr/bin/mpicc -fno-strict-overflow -Wsign-compare -DNDEBUG -O3 -pipe -march=native -fno-diagnostics-color -DNDEBUG -fPIC -I/usr/include/python3.12 -c _configtest.c -o _configtest.o
2024-07-14 22:39:10,923 root INFO success!
2024-07-14 22:39:10,923 root INFO removing: _configtest.c _configtest.o
2024-07-14 22:39:10,924 root INFO /usr/bin/mpicc -fno-strict-overflow -Wsign-compare -DNDEBUG -O3 -pipe -march=native -fno-diagnostics-color -DNDEBUG -fPIC -I/usr/include/python3.12 -c _configtest.c -o _configtest.o
2024-07-14 22:39:11,014 root INFO /usr/bin/mpicc -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -O3 -pipe -march=native -fno-diagnostics-color -DNDEBUG _configtest.o -L/var/tmp/portage/dev-python/mpi4py-3.1.5/work/mpi4py-3.1.5-python3_12/build/temp.linux-
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../lib64/libmpi.so: undefined reference to `mca_common_sm_fini'
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../lib64/libmpi.so: undefined reference to `opal_common_ucx_support_level'
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/14/../../../../lib64/libmpi.so: undefined reference to `opal_finalize_set_domain'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_systemd-20240710-124502

  UNMASKED:
  ~dev-libs/icu-75.1
  ~dev-libs/icu-layoutex-75.1
    Requested by sam
  ~dev-lang/perl-5.40.0
  ~virtual/perl-Archive-Tar-3.20.10_rc
  ~virtual/perl-CPAN-Meta-Requirements-2.143.0
  ~virtual/perl-Compress-Raw-Bzip2-2.212.0
  ~virtual/perl-DB_File-1.859.0
  ~virtual/perl-Data-Dumper-2.189.0
  ~virtual/perl-Devel-PPPort-3.720.0
  ~virtual/perl-Exporter-5.780.0
  ~virtual/perl-ExtUtils-CBuilder-0.280.240
  ~virtual/perl-ExtUtils-Manifest-1.750.0
  ~virtual/perl-File-Spec-3.900.0
  ~virtual/perl-HTTP-Tiny-0.88.0
  ~virtual/perl-IO-1.550.0
  ~virtual/perl-IO-Compress-2.212.0
  ~virtual/perl-IO-Socket-IP-0.420.0
  ~virtual/perl-IO-Zlib-1.150.0
  ~virtual/perl-Math-BigInt-2.3.2
  ~virtual/perl-Math-BigInt-FastCalc-0.501.800
  ~virtual/perl-Math-BigRat-2.3.2
  ~virtual/perl-Module-CoreList-5.202.406.90
  ~virtual/perl-Module-Metadata-1.0.38
  ~virtual/perl-Pod-Simple-3.450.0
  ~virtual/perl-Safe-2.460.0
  ~virtual/perl-Socket-2.38.0
  ~virtual/perl-Test-Harness-3.480.0
  ~virtual/perl-Test-Simple-1.302.199
  ~virtual/perl-Text-Tabs+Wrap-2024.1.0
  ~virtual/perl-Time-HiRes-1.977.700
  ~virtual/perl-Time-Local-1.350.0
  ~virtual/perl-autodie-2.370.0
  ~virtual/perl-bignum-0.670.0
  ~virtual/perl-podlators-5.10.200_rc
  ~virtual/perl-threads-2.400.0
  ~virtual/perl-threads-shared-1.690.0
  ~virtual/perl-version-0.993.0
    Requested by dilfridge and sam

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 18.1.8
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.8
Python 3.12.4
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby32 (with Rubygems)
  [3]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.79.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.11_p9 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.3_p9 [openjdk-bin-21]
3)	Eclipse Temurin JDK 8.412_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.22.5 linux/amd64

  HEAD of ::gentoo
commit 7a27fb069cdb688604fc1f33ff24d5ccd1da4135
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun Jul 14 20:34:07 2024 +0000

    2024-07-14 20:34:07 UTC

emerge -qpvO dev-python/mpi4py
[ebuild  N    ] dev-python/mpi4py-3.1.5  USE="-debug -doc -examples -test" PYTHON_TARGETS="python3_12 -python3_10 -python3_11"
Comment 1 Toralf Förster gentoo-dev 2024-07-15 17:42:42 UTC
Created attachment 897682 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-07-15 17:42:43 UTC
Created attachment 897683 [details]
dev-python:mpi4py-3.1.5:20240714-223902.log
Comment 3 Toralf Förster gentoo-dev 2024-07-15 17:42:44 UTC
Created attachment 897684 [details]
emerge-history.txt.xz
Comment 4 Toralf Förster gentoo-dev 2024-07-15 17:42:46 UTC
Created attachment 897685 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2024-07-15 17:42:47 UTC
Created attachment 897686 [details]
etc.clang.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-07-15 17:42:48 UTC
Created attachment 897687 [details]
etc.portage.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-07-15 17:42:49 UTC
Created attachment 897688 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-07-15 17:42:50 UTC
Created attachment 897689 [details]
temp.tar.xz