Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 935052 - sys-devel/gcc: ICE when building dev-python/scipy with LTO
Summary: sys-devel/gcc: ICE when building dev-python/scipy with LTO
Status: IN_PROGRESS
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Toolchain Maintainers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-06-28 02:42 UTC by Sam James
Modified: 2024-07-04 05:41 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

Note You need to log in before you can comment on or make changes to this bug.
Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-06-28 02:42:59 UTC
```
FAILED: scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so
x86_64-pc-linux-gnu-g++  -o scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/meson-generated_cython_special.c
.o scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/_cosine.c.o scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/special_wrappers.cpp.o scipy/special/cython
_special.pypy310-pp73-x86_64-linux-gnu.so.p/sf_error.cc.o scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/dd_real_wrappers.cpp.o -flto -Wl,--as-needed -Wl,--allow-shlib-u
ndefined -shared -fPIC -O2 -Wl,-O1 '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/var/tmp/portage/dev-python/scipy-1.14.0/work/scipy-1.14.0-pypy3/scipy/special -Wl,--start-group scipy/special/li
bcdflib.a scipy/special/libsf_error_state.so -Wl,--version-script=/var/tmp/portage/dev-python/scipy-1.14.0/work/scipy-1.14.0/scipy/_build_utils/link-version-pyinit.map /usr/lib/pypy3.10/
site-packages/numpy/_core/include/../lib/libnpymath.a -Wl,--end-group
[...]

../scipy-1.14.0/scipy/special/special_wrappers.cpp:407:13: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
during GIMPLE pass: forwprop
scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/cython_special.c: In function ‘__pyx_fuse_0__pyx_pw_5scipy_7special_14cython_special_531_airy_pywrap’:
scipy/special/cython_special.pypy310-pp73-x86_64-linux-gnu.so.p/cython_special.c:32109:18: internal compiler error: Segmentation fault
32109 | static PyObject *__pyx_fuse_0__pyx_pw_5scipy_7special_14cython_special_531_airy_pywrap(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
      |                  ^
0x561e47ff6d9e internal_error(char const*, ...)
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/diagnostic-global-context.cc:491
0x561e478a2615 crash_signal
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/toplev.cc:319
0x561e481fdf15 tree_class_check(tree_node*, tree_code_class, char const*, int, char const*)
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/tree.h:3786
0x561e481fdf15 useless_type_conversion_p(tree_node*, tree_node*)
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/gimple-expr.cc:86
0x561e48244990 verify_gimple_assign_single
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/tree-cfg.cc:4610
0x561e482f700c verify_gimple_in_cfg(function*, bool, bool)
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/tree-cfg.cc:5614
0x561e4819e4c7 execute_function_todo
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/passes.cc:2089
0x561e4819e4c7 do_per_function
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/passes.cc:1688
0x561e4819e4c7 execute_todo
        /usr/src/debug/sys-devel/gcc-15.0.9999/gcc-15.0.9999/gcc/passes.cc:2143
Please submit a full bug report, with preprocessed source (by using -freport-bug).
Please include the complete backtrace with any bug report.
See <https://bugs.gentoo.org/> for instructions.
make: *** [/var/tmp/portage/dev-python/scipy-1.14.0/temp/ccEvmLM7.mk:4: /var/tmp/portage/dev-python/scipy-1.14.0/temp/ccWDkedi.ltrans1.ltrans.o] Error 1
make: *** Waiting for unfinished jobs....
during GIMPLE pass: forwprop
```

----

$ emerge --info
Portage 3.0.65-7+g4d1776486-dirty (python 3.13.0-beta-2, default/linux/amd64/23.0/hardened, gcc-15, glibc-2.39-r9, 6.6.35 x86_64)
=================================================================
System uname: Linux-6.6.35-x86_64-AMD_Ryzen_9_3950X_16-Core_Processor-with-glibc2.39
KiB Mem:    65740436 total,  11201840 free
KiB Swap:   16662520 total,    132900 free
Timestamp of repository gentoo: Thu, 27 Jun 2024 03:04:18 +0000
Head commit of repository gentoo: 6b3f5a7d01f04dfb8123ae14a18fb68c5bff4098

Timestamp of repository kde: Tue, 25 Jun 2024 22:48:56 +0000
Head commit of repository kde: 8361832c3af4ad40d3dbf4ae2a7fd81940542285

Timestamp of repository qt: Sun, 23 Jun 2024 20:33:44 +0000
Head commit of repository qt: f7463f876d4ecc1cbc8e9135dbef4aeff77a5916

Timestamp of repository sam_c: Fri, 17 May 2024 23:20:36 +0000
Head commit of repository sam_c: 6fdaab3ca6fbf8a4de2c98b328fe8eb0b0ba00a2

sh dash 0.5.12
ld GNU ld (Gentoo 9999 p1) 2.42.50.20240615
ccache version 4.10 [disabled]
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.3_alpha-r4::gentoo
dev-build/autoconf:        2.13-r8::gentoo, 2.69-r9::gentoo, 2.72-r1::gentoo, 9999::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.29.3::gentoo
dev-build/libtool:         2.5.0::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.5.0_rc1::gentoo
dev-java/java-config:      2.3.3-r1::gentoo
dev-lang/perl:             5.40.0::gentoo
dev-lang/python:           3.10.14_p1-r1::gentoo, 3.11.9-r1::gentoo, 3.12.4_p1::gentoo, 3.13.0_beta2_p9::gentoo
dev-lang/rust:             1.77.1::gentoo
dev-lang/rust-bin:         1.79.0::gentoo
dev-util/ccache:           4.10-r1::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          255.7::gentoo
sys-devel/binutils:        2.38-r2::gentoo, 2.39-r5::gentoo, 2.40-r9::gentoo, 2.41-r5::gentoo, 2.42-r1::gentoo, 9999::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           17.0.6::gentoo, 18.1.8::gentoo
sys-devel/gcc:             10.5.0::gentoo, 11.4.1_p20240619::gentoo, 12.4.0::gentoo, 13.3.1_p20240614::gentoo, 14.1.1_p20240622::gentoo, 15.0.9999::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             17.0.6::gentoo, 18.1.8::gentoo
sys-devel/llvm:            17.0.6::gentoo, 18.1.8::gentoo
sys-kernel/linux-headers:  6.9::gentoo (virtual/os-headers)
sys-libs/glibc:            2.39-r9::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    eclass-overrides: sam_c
    volatile: False
    sync-git-verify-commit-signature: yes
    sync-git-clone-extra-opts: -b stable -c gc.reflogExpire=0 -c gc.reflogExpireUnreachable=0 -c gc.rerereresolved=0 -c gc.rerereunresolved=0 -c gc.pruneExpire=now

crossdev
    location: /var/db/repos/crossdev
    masters: gentoo
    eclass-overrides: sam_c
    volatile: False

kde
    location: /var/db/repos/kde
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/kde.git
    masters: gentoo
    eclass-overrides: sam_c
    volatile: False

local
    location: /var/db/repos/local
    masters: gentoo
    eclass-overrides: sam_c
    volatile: False

qt
    location: /var/db/repos/qt
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/qt.git
    masters: gentoo
    eclass-overrides: sam_c
    volatile: False

sam_c
    location: /var/db/repos/sam_c
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/sam_c.git
    masters: gentoo
    eclass-overrides: sam_c
    volatile: False

Installed sets: @sam-emacs, @sam-fonts, @sam-fortune
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O3 -march=native -mtls-dialect=gnu2 -flto=jobserver -fno-semantic-interposition -pipe -fcf-protection=none -fdiagnostics-color=always -fdiagnostics-urls=never -frecord-gcc-switches -Wa,-O2 -Wa,-mtune=znver2  -Wstrict-aliasing -Wfree-nonheap-object -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -Wstrict-aliasing -Wfree-nonheap-object -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -Wbuiltin-declaration-mismatch"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O3 -march=native -mtls-dialect=gnu2 -flto=jobserver -fno-semantic-interposition -pipe -fcf-protection=none -fdiagnostics-color=always -fdiagnostics-urls=never -frecord-gcc-switches -Wa,-O2 -Wa,-mtune=znver2  -Wstrict-aliasing -Wfree-nonheap-object -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --with-bdeps=y --complete-graph --deep --dynamic-deps=n --changed-deps=n --usepkg=y --implicit-system-deps=n --usepkg-exclude sys-fs/zfs --usepkg-exclude sys-fs/zfs-kmod --jobs=4 --load-average 32"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O3 -march=native -mtls-dialect=gnu2 -flto=jobserver -fno-semantic-interposition -pipe -fcf-protection=none -fdiagnostics-color=always -fdiagnostics-urls=never -frecord-gcc-switches -Wa,-O2 -Wa,-mtune=znver2  -Wstrict-aliasing -Wfree-nonheap-object -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg clean-logs config-protect-if-modified distlocks fixlafiles ipc-sandbox merge-wait mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O3 -march=native -mtls-dialect=gnu2 -flto=jobserver -fno-semantic-interposition -pipe -fcf-protection=none -fdiagnostics-color=always -fdiagnostics-urls=never -frecord-gcc-switches -Wa,-O2 -Wa,-mtune=znver2  -Wstrict-aliasing -Wfree-nonheap-object -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr"
GENTOO_MIRRORS="https://www.mirrorservice.org/sites/distfiles.gentoo.org/ https://mirror.bytemark.co.uk/gentoo/ https://mirrors.soeasyto.com/distfiles.gentoo.org/"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -fdiagnostics-color=always -flto=jobserver -Wl,--defsym=__gentoo_check_ldflags__=0"
LEX="reflex"
LINGUAS="en en_GB"
MAKEOPTS="-j32 -l32"
PKGDIR="/var/cache/binpkgs"
PORTAGE_BUNZIP2_COMMAND="lbunzip2"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native -C link-arg=-Wl,-z,pack-relative-relocs"
SHELL="/bin/bash"
USE="X a52 aac acl acpi activities aes alsa amd64 avx avx2 bash-completion bluetooth branding bzip2 cairo caps cdda cdr clang crypt dbus declarative dist-kernel dri dts dvd dvdr editorconfig emacs encode exif f16c filecaps firewalld flac fma3 freetype gdbm gif gmp gpm graphite gtk gui hardened harfbuzz hunspell iconv icu ipv6 jit jpeg kde kdesu kf6compat kwallet lcms libnotify libtirpc lto mad mmx mmxext mng modules-compress mp3 mp4 mpeg multilib ncurses nftables nls ogg opengl openmp pam pango pclmul pcre pdf pgo pic pie pipewire plasma png policykit popcnt ppds pulseaudio qml qt5 rdrand readline screencast sdl seccomp semantic-desktop sha sound spell sse sse2 sse3 sse4_1 sse4_2 sse4a ssl ssp ssse3 startup-notification svg system-av1 system-binutils system-boost system-bootstrap system-cairo system-clang system-digest system-ffmpeg system-harfbuzz system-heimdal system-icu system-jpeg system-leveldb system-libevent system-libs system-libvpx system-libyaml system-llvm system-lz4 system-mitkrb5 system-sqlite system-ssl system-tbb system-uulib system-webp system-zlib systemd test-rust tiff truetype udev udisks unicode upower usb valgrind verify-sig vorbis vulkan wayland widgets x264 xattr xcb xft xml xtpax xv xvid zlib zsh-completion" ABI_X86="32 64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en en-GB" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="AArch64 AMDGPU ARM AVR BPF Hexagon Lanai MSP430 Mips NVPTX PowerPC RISCV Sparc SystemZ WebAssembly X86 XCore" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12 pypy3 python3_10 python3_11 python3_13" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="aarch64 aarch64_be alpha armeb hppa i386 m68k ppc ppc64 ppc64le sparc sparc64 x86_64" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="amdgpu radeonsi radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
YACC="byacc"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, SIZE, STRINGS, STRIP, YFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-06-28 03:23:46 UTC
AndrewAmmerlaan reported this on IRC first (although his looked slightly different, release checking).
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-07-04 05:41:48 UTC
Fixed for 15, pending backports.