Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 934047 - app-portage/gentoolkit equery sometimes gives an error message when setup to use sqlite
Summary: app-portage/gentoolkit equery sometimes gives an error message when setup to ...
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Portage Tools Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-06-11 14:52 UTC by Georgi
Modified: 2024-06-11 15:32 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

Note You need to log in before you can comment on or make changes to this bug.
Description Georgi 2024-06-11 14:52:55 UTC
Two consequent invocations one with the error after the output. I'm not sure if the output is complete or partial.

I also have this in /etc/portage/modules:

portdbapi.auxdbmodule = portage.cache.sqlite.database


```
joro@joro-lt ~ $ equery d nodejs
 * These packages depend on nodejs:
dev-lang/rapydscript-ng-0.7.22 (net-libs/nodejs)
dev-qt/qtwebengine-6.7.1 (net-libs/nodejs[ssl])
www-client/firefox-126.0.1 (net-libs/nodejs)
joro@joro-lt ~ $ equery d rapydscript-ng 
 * These packages depend on rapydscript-ng:
app-text/calibre-7.12.0 (system-mathjax ? dev-lang/rapydscript-ng)
Exception ignored in: <function database.__del__ at 0x7f84a2301440>
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 199, in __del__
    self.sync()
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 188, in sync
    self.commit()
  File "/usr/lib/python3.12/site-packages/portage/cache/sqlite.py", line 326, in commit
    self._db_connection.commit()
sqlite3.ProgrammingError: Cannot operate on a closed database.
Exception ignored in: <function database.__del__ at 0x7f84a2301440>
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 199, in __del__
    self.sync()
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 188, in sync
    self.commit()
  File "/usr/lib/python3.12/site-packages/portage/cache/sqlite.py", line 326, in commit
    self._db_connection.commit()
sqlite3.ProgrammingError: Cannot operate on a closed database.
Exception ignored in: <function database.__del__ at 0x7f84a2301440>
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 199, in __del__
    self.sync()
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 188, in sync
    self.commit()
  File "/usr/lib/python3.12/site-packages/portage/cache/sqlite.py", line 326, in commit
    self._db_connection.commit()
sqlite3.ProgrammingError: Cannot operate on a closed database.
Exception ignored in: <function database.__del__ at 0x7f84a2301440>
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 199, in __del__
    self.sync()
  File "/usr/lib/python3.12/site-packages/portage/cache/template.py", line 188, in sync
    self.commit()
  File "/usr/lib/python3.12/site-packages/portage/cache/sqlite.py", line 326, in commit
    self._db_connection.commit()
sqlite3.ProgrammingError: Cannot operate on a closed database.
```

```
emerge --info 
Portage 3.0.63 (python 3.12.3-final-0, default/linux/amd64/23.0/desktop/gnome/systemd, gcc-13, glibc-2.39-r6, 6.1.81-gentoo-default x86_64)
=================================================================
System uname: Linux-6.1.81-gentoo-default-x86_64-AMD_Ryzen_7_5800H_with_Radeon_Graphics-with-glibc2.39
KiB Mem:    28574696 total,   1971532 free
KiB Swap:   67108860 total,  66457356 free
Timestamp of repository gentoo: Tue, 11 Jun 2024 13:51:11 +0000
Head commit of repository gentoo: 9de1ab33600f192d5adfd1d628448b031af5a5b0

Timestamp of repository guru: Mon, 10 Jun 2024 11:33:42 +0000
Head commit of repository guru: 6761226647f484216f9e31579e8caebab733a144

Head commit of repository logrusx: 024056758e83a0577b1b1bf1262496ac714d754a

Timestamp of repository nest: Sat, 08 Jun 2024 20:19:01 +0000
Head commit of repository nest: d933575a8e52c80dd89ca0140ed080b3ed44c980

Timestamp of repository pf4public: Sun, 09 Jun 2024 14:33:54 +0000
Head commit of repository pf4public: 3cd3afc10e09ec5d8a0f1af77beb11daf848de19

Timestamp of repository xarblu-overlay: Sat, 08 Jun 2024 17:04:22 +0000
Head commit of repository xarblu-overlay: b4d28974917b952009402bb755473bbbc9056ac2

sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.42 p3) 2.42.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-build/autoconf:        2.13-r8::gentoo, 2.71-r7::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.28.5::gentoo
dev-build/libtool:         2.4.7-r4::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.4.0-r1::gentoo
dev-java/java-config:      2.3.3-r1::gentoo
dev-lang/perl:             5.38.2-r3::gentoo
dev-lang/python:           3.11.9-r1::gentoo, 3.12.3-r1::gentoo
dev-lang/rust-bin:         1.77.1::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          255.7::gentoo
sys-devel/binutils:        2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           17.0.6::gentoo
sys-devel/gcc:             13.2.1_p20240210::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             17.0.6::gentoo
sys-devel/llvm:            17.0.6-r2::xarblu-overlay
sys-kernel/linux-headers:  6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.39-r6::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    volatile: False
    sync-git-verify-commit-signature: yes

guru
    location: /var/db/repos/guru
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/guru.git
    masters: gentoo
    volatile: False

logrusx
    location: /var/db/repos/logrusx
    sync-type: git
    sync-uri: https://github.com/logrusx/gentoo.git
    masters: gentoo
    volatile: False

nest
    location: /var/db/repos/nest
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/nest.git
    masters: gentoo
    volatile: False

pf4public
    location: /var/db/repos/pf4public
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/pf4public.git
    masters: gentoo
    volatile: False

xarblu-overlay
    location: /var/db/repos/xarblu-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/xarblu-overlay.git
    masters: gentoo
    volatile: False

localrepo
    location: /var/db/repos/localrepo
    masters: gentoo
    priority: 1
    volatile: True

Binary Repositories:

binhost-x86_64-v3
    priority: 9999
    sync-uri: https://ftp.snt.utwente.nl/pub/os/linux/gentoo/releases/amd64/binpackages/23.0/x86-64-v3

binhost-x86_64
    priority: 9998
    sync-uri: https://ftp.snt.utwente.nl/pub/os/linux/gentoo/releases/amd64/binpackages/23.0/x86-64

Installed sets: @desktop, @programming, @sway, @utils
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -pipe -O2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.9/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -pipe -O2"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -pipe -O2"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-request-signature buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait metadata-transfer multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -pipe -O2"
GENTOO_MIRRORS="ftp://ftp.snt.utwente.nl/pub/os/linux/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
LINGUAS="bg bg-BG en en-US"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac acl acpi alsa amd64 bluetooth branding bzip2 cairo cdda cdr cet colord crypt cups dbus dri dts dvd dvdr eds encode evo exif flac gdbm gif gnome gnome-keyring gnome-shell gpm gstreamer gtk gui iconv icu introspection ipv6 jpeg keyring lcms libnotify libtirpc mad mng mp3 mp4 mpeg multilib nautilus ncurses networkmanager nls ogg opengl openmp pam pango pcre pdf png policykit ppds pulseaudio readline sdl seccomp sound spell ssl startup-notification svg sysprof systemd test-rust tiff tracker truetype udev udisks unicode upower usb vorbis vulkan wayland wxwidgets x264 xattr xcb xft xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" L10N="bg bg-BG en en-US" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LLVM_TARGETS="AMDGPU NVPTX SPIRV" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="amdgpu radeonsi nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
```

Reproducible: Always