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Bug 930796 - sci-chemistry/gromacs-2024.1 - /.../pme_gpu_internal.cpp: error: MPI_INT was not declared in this scope
Summary: sci-chemistry/gromacs-2024.1 - /.../pme_gpu_internal.cpp: error: MPI_INT was ...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-04-27 18:37 UTC by Toralf Förster
Modified: 2024-04-27 18:37 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,21.51 KB, text/plain)
2024-04-27 18:37 UTC, Toralf Förster
Details
emerge-history.txt.xz (emerge-history.txt.xz,102.66 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details
environment (environment,189.84 KB, text/plain)
2024-04-27 18:37 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.31 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,51.70 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details
qlist-info.txt.xz (qlist-info.txt.xz,104.59 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2024.1:20240427-181746.log.xz (sci-chemistry:gromacs-2024.1:20240427-181746.log.xz,32.11 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,40.80 KB, application/x-xz)
2024-04-27 18:37 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2024-04-27 18:37:09 UTC
too long lines were shrinked:

                 from /var/tmp/portage/sci-chemistry/gromacs-2024.1/work/gromacs-2024.1/src/gromacs/ewald/pme_gpu_internal.h:49,
                 from /var/tmp/portage/sci-chemistry/gromacs-2024.1/work/gromacs-2024.1/src/gromacs/ewald/pme_gpu_internal.cpp:49:
/usr/include/CL/cl_version.h:22:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)
   22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)")
      |                                                                                                        ^
/var/tmp/portage/sci-chemistry/gromacs-2024.1/work/gromacs-2024.1/src/gromacs/ewald/pme_gpu_internal.cpp: In function void pme_gpu_reinit_atoms(PmeGpu*, int, const real*, const real*):
/var/tmp/portage/sci-chemistry/gromacs-2024.1/work/gromacs-2024.1/src/gromacs/ewald/pme_gpu_internal.cpp:1426:89: error: MPI_INT was not declared in this scope
 1426 |                 &pmeGpu->nAtomsAlloc, &pmeGpu->nvshmemParams->nAtomsAlloc_symmetric, 1, MPI_INT, MPI_MAX, MPI_COMM_WORLD);
      |                                                                                         ^~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_hardened_systemd-20240417-170004

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 18.1.4
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.4
Python 3.11.9
Available Rust versions:
  [1]   rust-bin-1.77.1
  [2]   rust-1.77.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.22_p7 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.10_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.2_p13 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.402_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.22.2 linux/amd64

  HEAD of ::gentoo
commit d9cfc0994d7fba71fa7a436e60936ab76ebdcff8
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sat Apr 27 17:19:40 2024 +0000

    2024-04-27 17:19:39 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2024.1  USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc lapack offensive opencl single-precision tng -blas -build-manual -clang -clang-cuda -cuda -double-precision -mkl -mpi -openmp (-python) -test -threads" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_11 -python3_10 -python3_12"
Comment 1 Toralf Förster gentoo-dev 2024-04-27 18:37:10 UTC
Created attachment 891863 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-04-27 18:37:11 UTC
Created attachment 891864 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-04-27 18:37:13 UTC
Created attachment 891865 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-04-27 18:37:13 UTC
Created attachment 891866 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-04-27 18:37:14 UTC
Created attachment 891867 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-04-27 18:37:16 UTC
Created attachment 891868 [details]
qlist-info.txt.xz
Comment 7 Toralf Förster gentoo-dev 2024-04-27 18:37:17 UTC
Created attachment 891869 [details]
sci-chemistry:gromacs-2024.1:20240427-181746.log.xz
Comment 8 Toralf Förster gentoo-dev 2024-04-27 18:37:18 UTC
Created attachment 891870 [details]
temp.tar.xz