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Bug 930084 - sci-libs/vtk-9.2.6-r1[cuda]: gcc: error: unrecognized command-line option ‘-Wl’, '--as-needed'
Summary: sci-libs/vtk-9.2.6-r1[cuda]: gcc: error: unrecognized command-line option ‘-W...
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Paul Zander
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-04-15 20:58 UTC by Anton Gubarkov
Modified: 2024-04-27 17:01 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (log.tbz2,173.08 KB, application/x-bzip2-compressed-tar)
2024-04-15 20:59 UTC, Anton Gubarkov
Details
the debug output (file_930084.txt,85 bytes, text/plain)
2024-04-27 17:01 UTC, Anton Gubarkov
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Anton Gubarkov 2024-04-15 20:58:01 UTC
FAILED: ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/ArrayCopy.cxx.o 
/opt/cuda/bin/nvcc -forward-unknown-to-host-compiler -DVTKMDIY_DEBUG -DVTKMDIY_MPI_AS_LIB -DVTKMDIY_NO_THR
EADS -DVTK_IN_VTK -Dvtkm_cont_EXPORTS -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/v
tkm/vtkvtkm/vtk-m -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6_build/ThirdParty/vtkm/vtkvtkm/vt
k-m/include -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thi
rdparty/optionparser -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/vtkm/vtkvtkm/vtk-m
/vtkm/thirdparty/diy -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/vtkm/vtkvtkm/vtk-m
/vtkm/thirdparty/lcl/vtkmlcl -I/var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/vtkm/vtkvt
km/vtk-m/vtkm/thirdparty/loguru -isystem /var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2.6/ThirdParty/
vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include -isystem /var/tmp/portage/sci-libs/vtk-9.2.6-r1/wor
k/VTK-9.2.6_build/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/thirdparty/diy/vtkmdiy/include/vtkmdiy/mpi -O2 -g -DN
DEBUG -std=c++14 "--generate-code=arch=compute_61,code=[compute_61,sm_61]" -Xcompiler=-fPIC -Xcompiler=-fv
isibility=hidden -Xcompiler=-Wl,--as-needed -Xcompiler=-Wl,-O1 -Xcompiler=-pipe -Xcompiler=-falign-functio
ns=32 -Xcompiler=-fuse-linker-plugin -Xcompiler=-O3 -Xcompiler=-march=native -Xcompiler=-Wall,-Wcast-align
,-Wpointer-arith,-Wformat,-Wformat-security,-Wshadow,-fno-common,-Wunused,-Wno-unknown-pragmas,-Wno-unused
-local-typedefs,-Wno-unused-function,-Wchar-subscripts,-Wfloat-conversion,-Wodr -Xcudafe=--display_error_n
umber -Xcompiler=-ffunction-sections --expt-relaxed-constexpr -Xcompiler=-fopenmp -MD -MT ThirdParty/vtkm/
vtkvtkm/vtk-m/vtkm/cont/CMakeFiles/vtkm_cont.dir/ArrayCopy.cxx.o -MF ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/co
nt/CMakeFiles/vtkm_cont.dir/ArrayCopy.cxx.o.d -x cu -c /var/tmp/portage/sci-libs/vtk-9.2.6-r1/work/VTK-9.2
.6/ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/ArrayCopy.cxx -o ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeF
iles/vtkm_cont.dir/ArrayCopy.cxx.o
gcc: error: unrecognized command-line option ‘-Wl’; did you mean ‘-W’?
gcc: error: unrecognized command-line option ‘--as-needed’; did you mean ‘-mno-needed’?
gcc: error: unrecognized command-line option ‘-Wl’; did you mean ‘-W’?
Comment 1 Anton Gubarkov 2024-04-15 20:59:46 UTC
Created attachment 890887 [details]
build log
Comment 2 Anton Gubarkov 2024-04-15 21:00:42 UTC
PF16W6Y2 /var/tmp/portage/sci-libs/vtk-9.2.6-r1/temp # emerge --info
Portage 3.0.63 (python 3.11.9-final-0, default/linux/amd64/17.1/desktop/gnome/systemd/merged-usr, gcc-13, glibc-2.39-r2, 6.6.26-gentoo-r1 x86_64)
=================================================================
System uname: Linux-6.6.26-gentoo-r1-x86_64-Intel-R-_Core-TM-_i7-8850H_CPU_@_2.60GHz-with-glibc2.39
KiB Mem:    32561976 total,   7591980 free
KiB Swap:   33554424 total,  32193528 free
Timestamp of repository gentoo: Mon, 15 Apr 2024 10:34:24 +0000
Head commit of repository gentoo: 48b8f38aa96e68451a196bee316d0741fa733247

Timestamp of repository audio-overlay: Tue, 09 Apr 2024 20:33:38 +0000
Head commit of repository audio-overlay: 788f3a77c2c0292b17db3d5b2b737979c550038b

Timestamp of repository guru: Mon, 15 Apr 2024 09:48:29 +0000
Head commit of repository guru: d1156cac952a217b312c5c07f4169ec304c63d6b

Timestamp of repository vowstar: Mon, 15 Apr 2024 06:52:28 +0000
Head commit of repository vowstar: 4fa6ce2e08a596755a2250a209323f7ae312fd88

Head commit of repository calculate: 4e61beded60344bca2c19b584c769f02869ec921

Head commit of repository dlang: 877403097b5e2779b411ba206132897416c16a4d

Head commit of repository gentoo-zh: f77e16c2d7d5ce1d079ba9d6f827e51171ef132f

Head commit of repository go-overlay: bde6b0fe1edcb9202c5c95b1f286cdf1fa64ddea

Head commit of repository lto-overlay: a46a5749ee6e70bcf2317f9d6e24037779b643a8

Head commit of repository mv: 01e4cba9a9aa27badc903a60847717992df9dc7e

Head commit of repository steam-overlay: 6383d556f91cc926d7c2295a212dfe3217e0a536

Head commit of repository tlp: af2991838d36eb8337616cb66dcda93d455fdd66

Head commit of repository rugubara: 65136b7a37e25e498d66a1f6844dfb1b5cc20bbf

sh bash 5.2_p26
ld GNU ld (Gentoo 2.42 p3) 2.42.0
ccache version 4.9.1 [disabled]
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p26::gentoo
dev-build/autoconf:        2.13-r8::gentoo, 2.72-r1::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.29.2::gentoo
dev-build/libtool:         2.4.7-r4::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.4.0-r1::gentoo
dev-java/java-config:      2.3.3-r1::gentoo
dev-lang/perl:             5.38.2-r2::gentoo
dev-lang/python:           3.10.14_p1::gentoo, 3.11.9::gentoo, 3.12.3::gentoo
dev-lang/rust:             1.77.1::gentoo
dev-util/ccache:           4.9.1-r1::gentoo
sys-apps/baselayout:       2.15::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          255.4::gentoo
sys-devel/binutils:        2.42-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           15.0.7-r3::gentoo, 17.0.6::gentoo, 18.1.3::gentoo
sys-devel/gcc:             12.3.1_p20240209::gentoo, 13.2.1_p20240210::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             17.0.6::gentoo, 18.1.3::gentoo
sys-devel/llvm:            15.0.7-r3::gentoo, 17.0.6::gentoo, 18.1.3::gentoo
sys-kernel/linux-headers:  6.8-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.39-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    volatile: True

audio-overlay
    location: /var/db/repos/audio-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/audio-overlay.git
    masters: gentoo
    volatile: False

guru
    location: /var/db/repos/guru
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/guru.git
    masters: gentoo
    volatile: False

vowstar
    location: /var/db/repos/vowstar
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/vowstar.git
    masters: gentoo
    volatile: False

calculate
    location: /var/lib/layman/calculate
    sync-type: git
    sync-uri: https://git.calculate-linux.org/calculate/calculate-overlay.git
    masters: gentoo
    priority: 50
    volatile: True

dlang
    location: /var/lib/layman/dlang
    sync-type: git
    sync-uri: https://github.com/gentoo/dlang.git
    masters: gentoo
    priority: 50
    volatile: True

gentoo-zh
    location: /var/lib/layman/gentoo-zh
    sync-type: git
    sync-uri: https://github.com/microcai/gentoo-zh.git
    masters: gentoo
    priority: 50
    volatile: True

go-overlay
    location: /var/lib/layman/go-overlay
    sync-type: git
    sync-uri: https://github.com/Dr-Terrible/go-overlay.git
    masters: gentoo
    priority: 50
    volatile: True

lto-overlay
    location: /var/lib/layman/lto-overlay
    sync-type: git
    sync-uri: https://github.com/InBetweenNames/gentooLTO.git
    masters: gentoo mv
    priority: 50
    volatile: True

mv
    location: /var/lib/layman/mv
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/user/mv.git
    masters: gentoo
    priority: 50
    volatile: True

steam-overlay
    location: /var/lib/layman/steam-overlay
    sync-type: git
    sync-uri: https://github.com/anyc/steam-overlay.git
    masters: gentoo
    priority: 50
    volatile: True

tlp
    location: /var/lib/layman/tlp
    sync-type: git
    sync-uri: https://github.com/dywisor/tlp-portage.git
    masters: gentoo
    priority: 50
    volatile: True

rugubara
    location: /var/lib/layman/rugubara
    sync-type: git
    sync-uri: https://github.com/rugubara/overlay.git
    masters: gentoo
    priority: 100
    volatile: True

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA Vivaldi"
CBUILD="x86_64-pc-linux-gnu"
CC="gcc"
CFLAGS="-march=native -O3     -fuse-linker-plugin -falign-functions=32 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXX="g++"
CXXFLAGS="-march=native -O3     -fuse-linker-plugin -falign-functions=32 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O3     -fuse-linker-plugin -falign-functions=32 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-march=native -O3     -fuse-linker-plugin -falign-functions=32 -pipe"
GENTOO_MIRRORS="https://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j6"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac acl acpi aio alsa amd64 ap bash-completion bluetooth branding bzip2 cacert cairo caps cdda cdr chromecast clang cli client colord crypt cuda cups dbus device-mapper djvu dri dri3 dts dvd dvdr eds egl encode evo exif fat ffmpeg fftw flac fortran gdbm gif gimp gles2 gnome gnome-keyring gnome-online-accounts gnome-shell gpm graphite gsettings gstreamer gtk gui iconv icu introspection io-uring ipv6 iscsi iwd jack jpeg jpeg2k kernel-install keyring lcms libglvnd libnotify libtirpc libzfs lm_sensors lto lv2 lxc mad mng mp3 mp4 mpeg multilib native-headset nautilus ncat ncurses networkmanager nfs nls ntfs nvenc nvidia nvme ogg opencl opengl openmp opus p2p pam pango pcre pdf pipewire png policykit ppds pulseaudio qt5 raw readline screencast sdl sdl2 seccomp smp sna sound sound-server spell spice ssl startup-notification svg synaptics sysprof system-llvm systemd test-rust thunderbolt tiff tracker truetype udev udisks uefi unicode upower usb usbredir user-session vaapi vala vdpau virgl vlc vorbis vulkan wayland webdav wireguard wxwidgets x264 x265 xattr xcb xft xml xv xvid zeroconf zfs zlib zstd" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="en ru" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31 ruby31 ruby32" VIDEO_CARDS="intel i965 iris nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 3 Paul Zander 2024-04-15 21:14:10 UTC
Why do you have linker options in the CXXFLAGS? That will not work with how nvcc calls gcc.
Comment 4 Anton Gubarkov 2024-04-16 09:12:54 UTC
I'm not sure I understand you. I have no linker options in CXXFLAGS...
I seem to have the LDFLAGS set to values that nvcc is allergic to... But I could not figure out where LDFLAGS is set... 
I checked all files in my /etc/portage

PF16W6Y2 /etc/portage # grep -R LDFLAGS= /etc/portage
/etc/portage/env/compiler-clang-lto:#LDFLAGS="${LDFLAGS}, -Wl,-O2 -Wl,--as-needed"     #please use whichever optimization level you're comfortable with
/etc/portage/env/compiler-clang:LDFLAGS="-fuse-ld=lld -rtlib=compiler-rt -unwindlib=libunwind"
/etc/portage/bashrc.d/10-flag.sh:	LDFLAGS=
/etc/portage/bashrc.d/10-flag.sh:	OPTLDFLAGS=
/etc/portage/bashrc.d/10-flag.sh:			LDFLAGS=
/etc/portage/bashrc.d/10-flag.sh:	LDFLAGS=$newld

no package is currently assigned to /etc/portage/env/compiler-clang-lto environment in my package.env.

Can you please be a little more specific about these linker options you mentioned?
Comment 5 Paul Zander 2024-04-16 10:29:08 UTC
These are your build flags. All of them have LDFLAGS duplicated into them.
> CFLAGS='-march=native -O3 -fuse-linker-plugin -falign-functions=32 -pipe -Wl,-O1 -Wl,--as-needed'
> CXXFLAGS='-march=native -O3 -fuse-linker-plugin -falign-functions=32 -pipe -Wl,-O1 -Wl,--as-needed'
> FFLAGS='-march=native -O3 -fuse-linker-plugin -falign-functions=32 -pipe -Wl,-O1 -Wl,--as-needed'
> FCFLAGS='-march=native -O3 -fuse-linker-plugin -falign-functions=32 -pipe -Wl,-O1 -Wl,--as-needed'
> F77FLAGS='-march=native -O3 -fuse-linker-plugin -falign-functions=32 -pipe -Wl,-O1 -Wl,--as-needed'
> LDFLAGS='-Wl,-O1 -Wl,--as-needed'
Find out how '-Wl,-O1 -Wl,--as-needed' ends up in CFLAGS, CXXFLAGS, FFLAGS, FCFLAGS & F77FLAGS, and undo that. The default profile doesn't do that so it must be something on your end.
Comment 6 Anton Gubarkov 2024-04-27 16:58:20 UTC
after running the emerge in --debug, I found out that the scripts in /etc/portage/bashrc.d/10-flags.sh set these values in **FLAGS.

I don't have enough time/knowledge to debug those..
I attach the output of the emerge --debug
Comment 7 Anton Gubarkov 2024-04-27 17:01:46 UTC
Created attachment 891856 [details]
the debug output