https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: dev-python/scikit-image-0.23.0_rc2 fails tests. Discovered on: amd64 (internal ref: ci) Info about the issue: https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0015
Created attachment 889460 [details] build.log.xz build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
Error(s) that match a know pattern in addition to what has been reported in the summary: E AssertionError: E ImportError: PyWavelets is not installed. Please ensure it is installed in order to use this function. E ModuleNotFoundError: No module named 'pywt' except ImportError: FAILED measure/tests/test_fit.py::test_ellipse_parameter_stability - AssertionError: filters/rank/tests/test_rank.py::test_1d_input_raises_error[autolevel] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1242/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[enhance_contrast] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1252/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[entropy] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1257/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[equalize] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1243/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[geometric_mean] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1247/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[gradient] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1244/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[majority] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1259/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[maximum] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1245/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[mean] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1246/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[median] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1249/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[minimum] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1250/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[modal] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1251/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[noise_filter] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1256/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[otsu] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1258/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[pop] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1253/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[subtract_mean] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1248/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[sum] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1254/8680] filters/rank/tests/test_rank.py::test_1d_input_raises_error[threshold] <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/filters/rank/tests/test_rank.py PASSED [1255/8680] measure/tests/test_fit.py::test_ellipse_parameter_stability <- ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/measure/tests/test_fit.py FAILED [6064/8680] SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/feature/tests/test_fisher_vector.py:5: could not import 'sklearn': No module named 'sklearn' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/io/tests/test_fits.py:6: could not import 'astropy': No module named 'astropy' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/io/tests/test_imread.py:17: could not import 'imread': No module named 'imread' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/io/tests/test_mpl_imshow.py:7: could not import 'matplotlib.pyplot': No module named 'matplotlib' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/io/tests/test_simpleitk.py:8: could not import 'SimpleITK': No module named 'SimpleITK' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/measure/tests/test_regionprops.py:1380: could not import 'numpydoc.docscrape': No module named 'numpydoc' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/_shared/tests/test_geometry.py:7: could not import 'matplotlib': No module named 'matplotlib' SKIPPED [1] ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/util/tests/test_apply_parallel.py:10: could not import 'dask.array': No module named 'dask'
The actual error: ``` =================================== FAILURES =================================== _______________________ test_ellipse_parameter_stability _______________________ def test_ellipse_parameter_stability(): """The fit should be modified so that a > b""" for angle in np.arange(0, 180 + 1, 1): # generate rotation matrix theta = np.deg2rad(angle) c = np.cos(theta) s = np.sin(theta) R = np.array([[c, -s], [s, c]]) # generate points on ellipse t = np.linspace(0, 2 * np.pi, 20) a = 100 b = 50 points = np.array([a * np.cos(t), b * np.sin(t)]) points = R @ points # fit model to points ellipse_model = EllipseModel() ellipse_model.estimate(points.T) _, _, a_prime, b_prime, theta_prime = ellipse_model.params > assert_almost_equal(theta_prime, theta) R = array([[ 0.70710678, -0.70710678], [ 0.70710678, 0.70710678]]) _ = 4.440892098500626e-16 a = 100 a_prime = 99.99999999999999 angle = 45 b = 50 b_prime = 49.99999999999999 c = 0.7071067811865476 ellipse_model = <skimage.measure.fit.EllipseModel object at 0x72e717cce680> points = array([[ 70.71067812, 55.39951871, 34.08496184, 9.07677047, -16.91502982, -41.07382417, -60.78163234, -73.90280752, -79.01546679, -75.56557418, -63.92697909, -45.36090388, -21.87927089, 3.97332059, 29.39534113, 51.63192035, 68.27337984, 77.51635926, 78.35923836, 70.71067812], [ 70.71067812, 78.35923836, 77.51635926, 68.27337984, 51.63192035, 29.39534113, 3.97332059, -21.87927089, -45.36090388, -63.92697909, -75.56557418, -79.01546679, -73.90280752, -60.78163234, -41.07382417, -16.91502982, 9.07677047, 34.08496184, 55.39951871, 70.71067812]]) s = 0.7071067811865475 t = array([0. , 0.33069396, 0.66138793, 0.99208189, 1.32277585, 1.65346982, 1.98416378, 2.31485774, 2.64555171, 2.97624567, 3.30693964, 3.6376336 , 3.96832756, 4.29902153, 4.62971549, 4.96040945, 5.29110342, 5.62179738, 5.95249134, 6.28318531]) theta = 0.7853981633974483 theta_prime = 2.356194490192345 ../scikit_image-0.23.0rc2-python3_10/install/usr/lib/python3.10/site-packages/skimage/measure/tests/test_fit.py:263: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ args = (2.356194490192345, 0.7853981633974483), kwds = {} @wraps(func) def inner(*args, **kwds): with self._recreate_cm(): > return func(*args, **kwds) E AssertionError: E Arrays are not almost equal to 7 decimals E ACTUAL: 2.356194490192345 E DESIRED: 0.7853981633974483 args = (2.356194490192345, 0.7853981633974483) func = <function assert_almost_equal at 0x72e72ba03640> kwds = {} self = <contextlib._GeneratorContextManager object at 0x72e72b6bd1e0> /usr/lib/python3.10/contextlib.py:79: AssertionError ```
That said, I can't reproduce, neither with numpy-1 nor numpy-2.
