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Bug 92755 - patching lam-mpi fails during install
Summary: patching lam-mpi fails during install
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 All
: High normal
Assignee: Gentoo Cluster Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2005-05-15 19:50 UTC by Jeffrey Gardner (RETIRED)
Modified: 2010-09-10 19:00 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Jeffrey Gardner (RETIRED) gentoo-dev 2005-05-15 19:50:28 UTC
lam-mpi fails to install and throws the following error:

 * Applying lam-mpi-7.1.1-shared-romio.patch ...

 * Failed Patch: lam-mpi-7.1.1-shared-romio.patch !
 *  ( /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch )
 * 
 * Include in your bugreport the contents of:
 * 
 *   /var/tmp/portage/lam-mpi-7.1.1/temp/lam-mpi-7.1.1-shared-romio.patch-1830.o                               ut



Here is the file it mentions:

***** lam-mpi-7.1.1-shared-romio.patch *****

============================================

PATCH COMMAND:  patch -p0 -g0 --no-backup-if-mismatch < /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch

============================================
patching file lam-7.1.1/romio/mpi-io/Makefile.in
Hunk #2 FAILED at 58.
Hunk #3 FAILED at 76.
2 out of 3 hunks FAILED -- saving rejects to file lam-7.1.1/romio/mpi-io/Makefile.in.rej
patching file lam-7.1.1/romio/util/romioinstall.in
============================================

PATCH COMMAND:  patch -p1 -g0 --no-backup-if-mismatch < /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch

============================================
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/mpi-io/Makefile.in.orig     2005-05-15 23:12:33.317533904 +0200
|+++ lam-7.1.1/romio/mpi-io/Makefile.in  2005-05-15 23:15:25.733322720 +0200
--------------------------
No file to patch.  Skipping patch.
3 out of 3 hunks ignored
can't find file to patch at input line 42
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/util/romioinstall.in.orig	2005-05-11 20:06:51.526529552 +0200
|+++ lam-7.1.1/romio/util/romioinstall.in	2005-05-11 20:07:10.845592608 +0200
--------------------------
No file to patch.  Skipping patch.
1 out of 1 hunk ignored
============================================

PATCH COMMAND:  patch -p2 -g0 --no-backup-if-mismatch < /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch

============================================
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/mpi-io/Makefile.in.orig     2005-05-15 23:12:33.317533904 +0200
|+++ lam-7.1.1/romio/mpi-io/Makefile.in  2005-05-15 23:15:25.733322720 +0200
--------------------------
No file to patch.  Skipping patch.
3 out of 3 hunks ignored
can't find file to patch at input line 42
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/util/romioinstall.in.orig	2005-05-11 20:06:51.526529552 +0200
|+++ lam-7.1.1/romio/util/romioinstall.in	2005-05-11 20:07:10.845592608 +0200
--------------------------
No file to patch.  Skipping patch.
1 out of 1 hunk ignored
============================================

PATCH COMMAND:  patch -p3 -g0 --no-backup-if-mismatch < /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch

============================================
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/mpi-io/Makefile.in.orig     2005-05-15 23:12:33.317533904 +0200
|+++ lam-7.1.1/romio/mpi-io/Makefile.in  2005-05-15 23:15:25.733322720 +0200
--------------------------
No file to patch.  Skipping patch.
3 out of 3 hunks ignored
can't find file to patch at input line 42
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/util/romioinstall.in.orig	2005-05-11 20:06:51.526529552 +0200
|+++ lam-7.1.1/romio/util/romioinstall.in	2005-05-11 20:07:10.845592608 +0200
--------------------------
No file to patch.  Skipping patch.
1 out of 1 hunk ignored
============================================

PATCH COMMAND:  patch -p4 -g0 --no-backup-if-mismatch < /usr/portage/sys-cluster/lam-mpi/files/lam-mpi-7.1.1-shared-romio.patch

============================================
missing header for unified diff at line 3 of patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/mpi-io/Makefile.in.orig     2005-05-15 23:12:33.317533904 +0200
|+++ lam-7.1.1/romio/mpi-io/Makefile.in  2005-05-15 23:15:25.733322720 +0200
--------------------------
No file to patch.  Skipping patch.
3 out of 3 hunks ignored
missing header for unified diff at line 42 of patch
can't find file to patch at input line 42
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- lam-7.1.1/romio/util/romioinstall.in.orig	2005-05-11 20:06:51.526529552 +0200
|+++ lam-7.1.1/romio/util/romioinstall.in	2005-05-11 20:07:10.845592608 +0200
--------------------------
No file to patch.  Skipping patch.
1 out of 1 hunk ignored



ANd my emerge info

$ emerge info
Portage 2.0.51.19 (default-linux/amd64/2005.0, gcc-3.4.3, glibc-2.3.4.20041102-r1, 2.6.11-gentoo-r7 x86_64)
=================================================================
System uname: 2.6.11-gentoo-r7 x86_64 AMD Opteron(tm) Processor 246
Gentoo Base System version 1.4.16
Python:              dev-lang/python-2.3.5 [2.3.5 (#1, May 11 2005, 17:08:21)]
distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
dev-lang/python:     2.3.5
sys-apps/sandbox:    [Not Present]
sys-devel/autoconf:  2.13, 2.59-r6
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.5
sys-devel/binutils:  2.15.92.0.2-r8
sys-devel/libtool:   1.5.16
virtual/os-headers:  2.6.8.1-r4
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CFLAGS="-march=opteron -mtune=opteron -Os"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/env.d"
CXXFLAGS="-march=opteron -mtune=opteron -Os"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs autoconfig ccache distlocks sandbox strict"
GENTOO_MIRRORS="http://gentoo.ccccom.com http://mirrors.tds.net/gentoo ftp://gentoo.ccccom.com http://gentoo.osuosl.org http://www.ibiblio.org/pub/Linux/distributions/gentoo ftp://mirror.iawnet.sandia.gov/pub/gentoo"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="amd64 3xnowex X acpi alsa apache2 avi berkdb bitmap-fonts bonobo cdr crypt cups curl directfb dvd dvdr dvdread eds encode esd evo f77 fam fbcon flac font-server foomaticdb fortran gb gd gdbm gif gnome gnutls gpm gtk gtk2 gtkhtml guile imagemagick imlib ipv6 ithreads java jce jp2 jpeg jpg junit ldap libgda live lzw lzw-tiff mad maildir motif mozilla moznomail mp3 mpeg mpi mysql ncurses network nls no_wxgtk1 nptl nptlonly ogg oggvorbis opengl oss pam pda perl plotutils png ppds python readline rtc sasl sdl spell ssl tcltk tcpd tiff truetype truetype-fonts type1-fonts unicode usb userlocales vorbis xine xml xml2 xpm xprint xrandr xv xvid zlib userland_GNU kernel_linux elibc_glibc"
Unset:  ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTDIR_OVERLAY


Thanks and Good Luck!
je_fro
Comment 1 Octavio Ruiz (Ta^3) 2005-05-16 09:09:23 UTC
Please see and use (meanwhile is fixed) Attachment #59019 [details, diff] report to Bug 88110. :-)
Comment 2 Jeffrey Gardner (RETIRED) gentoo-dev 2005-05-16 10:53:28 UTC
Awesome!
Looks like it's working, 
Thanks!