Bug 927149 – sci-physics/espresso-4.2.0 fails to compile: dataspace.hpp:52:5: error: template<long unsigned int N> h5xx::dataspace::dataspace(const boost::array<long unsigned int, NumDims>&) cannot be overloaded with template<long unsigned int N> h5xx::dataspace::dat

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Agostino Sarubbo 2024-03-16 21:22:44 UTC]

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-physics/espresso-4.2.0 fails to compile.
Discovered on: amd64 (internal ref: ci)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0014

[Comment 1 Agostino Sarubbo 2024-03-16 21:22:44 UTC]

CC'ing also the author of the commit (dc22f56db1caf6960831a509410e453815767bee)

[Comment 2 Agostino Sarubbo 2024-03-16 21:22:46 UTC]

Created attachment 887774 [details]
build.log

build log and emerge --info

[Comment 3 Agostino Sarubbo 2024-03-16 21:22:47 UTC]

Error(s) that match a know pattern in addition to what has been reported in the summary:


-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Could NOT find GSL (missing: GSL_INCLUDE_DIR GSL_LIBRARY) (found version "")
-- Could NOT find Sphinx (missing: SPHINX_API_DOC_EXE) (Required is at least version "2.3.0")
fatal: not a git repository (or any parent up to mount point /var/tmp)
/var/tmp/portage/sci-physics/espresso-4.2.0/work/espresso/libs/h5xx/h5xx/dataspace/dataspace.hpp:52:5: error: ‘template<long unsigned int N> h5xx::dataspace::dataspace(const boost::array<long unsigned int, NumDims>&)’ cannot be overloaded with ‘template<long unsigned int N> h5xx::dataspace::dataspace(const boost::array<long unsigned int, NumDims>&)’

[Comment 4 Fabio Rossi 2025-02-03 15:38:59 UTC]

espresso embeds h5xx which is not compatible with hdf5 >= 1.13.0, it has been reported upstream:

https://lists.defectivebydesign.org/archive/html/espressomd-users/2023-08/msg00001.html
https://github.com/fhoefling/h5xx/issues/11