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Bug 925611 - dev-python/pipenv broken TypeError: Object of type PackageCollection is not JSON serializable
Summary: dev-python/pipenv broken TypeError: Object of type PackageCollection is not J...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: OzTiram
URL:
Whiteboard:
Keywords: PMASKED, PullRequest
Depends on:
Blocks:
 
Reported: 2024-02-27 11:52 UTC by Denis Strizhkin
Modified: 2024-03-25 11:51 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Denis Strizhkin 2024-02-27 11:52:57 UTC
Steps to reproduce:

https://distfiles.gentoo.org/releases/amd64/autobuilds/20240225T170409Z/stage3-amd64-llvm-openrc-20240225T170409Z.tar.xz

-Grab llvm image
-Chroot
-emerge pipenv

do basic command: pipenv install numpy
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-02-27 23:19:46 UTC
Please inclue the full output and emerge --info.
Comment 2 Denis Strizhkin 2024-02-28 19:35:31 UTC
# pipenv install numpy
/usr/lib/python3.11/site-packages/pydantic/main.py:996: RuntimeWarning: fields may not start with an underscore, ignoring "_meta"
  warnings.warn(f'fields may not start with an underscore, ignoring "{f_name}"', RuntimeWarning)
Creating a virtualenv for this project...
Pipfile: /root/test/Pipfile
Using default python from /usr/bin/python3.11 (3.11.8) to create virtualenv...
⠹ Creating virtual environment...created virtual environment CPython3.11.8.final.0-64 in 170ms
  creator CPython3Posix(dest=/root/.local/share/virtualenvs/test-JOGsY3RH, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/root/.local/share/virtualenv)
    added seed packages: pip==23.3.1, setuptools==69.0.2, wheel==0.42.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

✔ Successfully created virtual environment!
Virtualenv location: /root/.local/share/virtualenvs/test-JOGsY3RH
Creating a Pipfile for this project...
Installing numpy...
Resolving numpy...
Added numpy to Pipfile's [packages] ...
✔ Installation Succeeded
Pipfile.lock not found, creating...
Traceback (most recent call last):
  File "/usr/lib/python-exec/python3.11/pipenv", line 8, in <module>
    sys.exit(cli())
             ^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
    return self.main(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/pipenv/cli/options.py", line 58, in main
    return super().main(*args, **kwargs, windows_expand_args=False)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 1078, in main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/decorators.py", line 92, in new_func
    return ctx.invoke(f, obj, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/pipenv/cli/command.py", line 209, in install
    do_install(
  File "/usr/lib/python3.11/site-packages/pipenv/routines/install.py", line 297, in do_install
    raise e
  File "/usr/lib/python3.11/site-packages/pipenv/routines/install.py", line 281, in do_install
    do_init(
  File "/usr/lib/python3.11/site-packages/pipenv/routines/install.py", line 683, in do_init
    do_lock(
  File "/usr/lib/python3.11/site-packages/pipenv/routines/lock.py", line 33, in do_lock
    lockfile = project.lockfile(categories=lockfile_categories)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/pipenv/project.py", line 774, in lockfile
    lockfile = plette.Lockfile.with_meta_from(
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/plette/lockfiles.py", line 114, in with_meta_from
    "hash": pipfile.get_hash().__dict__,
            ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/plette/pipfiles.py", line 82, in get_hash
    content = json.dumps(data, sort_keys=True, separators=(",", ":"))
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/json/__init__.py", line 238, in dumps
    **kw).encode(obj)
          ^^^^^^^^^^^
  File "/usr/lib/python3.11/json/encoder.py", line 200, in encode
    chunks = self.iterencode(o, _one_shot=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/json/encoder.py", line 258, in iterencode
    return _iterencode(o, 0)
           ^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/json/encoder.py", line 180, in default
    raise TypeError(f'Object of type {o.__class__.__name__} '
TypeError: Object of type PackageCollection is not JSON serializable
Comment 3 Denis Strizhkin 2024-02-28 19:36:09 UTC
Portage 3.0.61 (python 3.11.8-final-0, default/linux/amd64/17.1/clang, gcc-13, glibc-2.38-r10, 6.7.3-gentoo-dist x86_64)
=================================================================
System uname: Linux-6.7.3-gentoo-dist-x86_64-AMD_Ryzen_5_5600X_6-Core_Processor-with-glibc2.38
KiB Mem:    32760696 total,    936236 free
KiB Swap:   65519612 total,  65519612 free
Timestamp of repository gentoo: Wed, 28 Feb 2024 00:45:01 +0000
Head commit of repository gentoo: 7d55c7c1d2d179894998a18dc311714e05f0d913
sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.41 p5) 2.41.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-build/autoconf:        2.71-r6::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.27.9::gentoo
dev-build/libtool:         2.4.7-r2::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.3.1-r1::gentoo
dev-lang/perl:             5.38.2-r1::gentoo
dev-lang/python:           3.11.8_p1::gentoo, 3.12.2_p1::gentoo
sys-apps/baselayout:       2.14-r2::gentoo
sys-apps/openrc:           0.53::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-devel/binutils:        2.41-r5::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           17.0.6::gentoo
sys-devel/gcc:             13.2.1_p20240113-r1::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             17.0.6::gentoo
sys-devel/llvm:            17.0.6::gentoo
sys-kernel/linux-headers:  6.6::gentoo (virtual/os-headers)
sys-libs/glibc:            2.38-r10::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 3
    sync-rsync-extra-opts: 

Binary Repositories:

gentoobinhost
    priority: 1
    sync-uri: https://distfiles.gentoo.org/releases/amd64/binpackages/17.1/x86-64_llvm

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
ADDR2LINE="llvm-addr2line"
AR="llvm-ar"
AS="clang -c"
CBUILD="x86_64-pc-linux-gnu"
CC="clang"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CPP="clang-cpp"
CXX="clang++"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LD="ld.lld"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--as-needed"
LEX="flex"
NM="llvm-nm"
OBJCOPY="llvm-objcopy"
OBJDUMP="llvm-objdump"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RANLIB="llvm-ranlib"
READELF="llvm-readelf"
STRINGS="llvm-strings"
STRIP="llvm-strip"
USE="acl amd64 bzip2 clang cli crypt dri fortran gdbm iconv ipv6 libtirpc llvm-libunwind multilib ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ARFLAGS, ASFLAGS, CCLD, CONFIG_SHELL, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RUSTFLAGS, SHELL, SIZE, YACC, YFLAGS
Comment 4 OzTiram 2024-02-28 20:33:55 UTC
The problem is not pipenv. It's plette version 1.0.0, which was added to gentoo.
I am also the maintainer of plette (upstream) and I unfortunately, released a broken package.

The previous version should be returned to gentoo, and plette 1.0.0 should be masked until I (or somebody else) fix the issue upstream.
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-02-28 20:36:12 UTC
(In reply to OzTiram from comment #4)
> The previous version should be returned to gentoo, and plette 1.0.0 should
> be masked until I (or somebody else) fix the issue upstream.

Please make a PR to do that, thanks!