Created attachment 881056 [details] failing build log But it builds fine if dev-lang/python:3.12 is removed
Created attachment 881060 [details] working build log emerge --info sci-physics/geant Portage 3.0.59 (python 3.11.7-final-0, default/linux/amd64/17.1, gcc-13, glibc-2.37-r7, 6.6.8-gentoo-std x86_64) ================================================================= System Settings ================================================================= System uname: Linux-6.6.8-gentoo-std-x86_64-Intel-R-_Core-TM-_i3-6100_CPU_@_3.70GHz-with-glibc2.37 KiB Mem: 3933676 total, 163492 free KiB Swap: 65535996 total, 65534448 free Timestamp of repository gentoo: Sat, 30 Dec 2023 19:15:01 +0000 Head commit of repository gentoo: 5c3be592705e073fda1dacac793dadf230db46dd sh bash 5.1_p16-r6 ld GNU ld (Gentoo 2.41 p2) 2.41.0 distcc 3.4 x86_64-pc-linux-gnu [disabled] app-misc/pax-utils: 1.3.5::gentoo app-shells/bash: 5.1_p16-r6::gentoo dev-java/java-config: 2.3.3-r1::gentoo dev-lang/perl: 5.38.2-r1::gentoo dev-lang/python: 2.7.18_p16-r1::gentoo, 3.10.13::gentoo, 3.11.7::gentoo, 3.12.1::gentoo dev-lang/rust: 1.74.1::gentoo dev-util/cmake: 3.27.7::gentoo dev-util/meson: 1.2.3::gentoo sys-apps/baselayout: 2.14-r1::gentoo sys-apps/openrc: 0.48::gentoo sys-apps/sandbox: 2.38::gentoo sys-devel/autoconf: 2.13-r7::gentoo, 2.71-r6::gentoo sys-devel/automake: 1.16.5-r1::gentoo sys-devel/binutils: 2.41-r2::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 15.0.7-r3::gentoo, 16.0.6::gentoo, 17.0.6::gentoo sys-devel/gcc: 10.5.0::gentoo, 11.4.1_p20230824::gentoo, 12.3.1_p20230825::gentoo, 13.2.1_p20231216::gentoo sys-devel/gcc-config: 2.11::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/lld: 15.0.7::gentoo, 17.0.6::gentoo sys-devel/llvm: 15.0.7-r3::gentoo, 16.0.6::gentoo, 17.0.6::gentoo sys-devel/make: 4.4.1-r1::gentoo sys-kernel/linux-headers: 6.6::gentoo (virtual/os-headers) sys-libs/glibc: 2.37-r7::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage priority: -1000 volatile: False sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: local location: /var/db/repos/local masters: gentoo priority: 10000 volatile: False ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" AR="gcc-ar" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.9/conf" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--alert y --alphabetical --ask-enter-invalid --autounmask y --autounmask-only n --autounmask-unrestricted-atoms y --autounmask-write y --complete-graph y --misspell-suggestions n --noconfmem --nospinner --tree --with-bdeps y" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-elog strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " GENTOO_MIRRORS="http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://ftp.halifax.rwth-aachen.de/gentoo/ http://ftp.free.fr/mirrors/ftp.gentoo.org/ http://mirrors.soeasyto.com/distfiles.gentoo.org/ http://gentoo.mirrors.ovh.net/gentoo-distfiles/ http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://mirror.leaseweb.com/gentoo/ http://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://mirror.bytemark.co.uk/gentoo/" LANG="fr_FR.utf8" LDFLAGS="-Wl,-O1 -Wl,-fuse-ld=bfd " LEX="flex" LINGUAS="fr" MAKEOPTS="-j3 -l3" NM="gcc-nm" PKGDIR="/var/cache/binpkgs" PORTAGE_COMPRESS="lzma" PORTAGE_COMPRESS_FLAGS="-9" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" RANLIB="gcc-ranlib" SHELL="/bin/bash" USE="amd64 asm custom-cflags emacs eselect-ldso fortran gentoo-vm gtk-doc minimal ocamlopt split-usr test-rust verify-sig" ABI_X86="64" ALSA_CARDS="hda-intel" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" L10N="fr" LUA_SINGLE_TARGET="lua5-4" LUA_TARGETS="lua5-4" PHP_TARGETS="php8-1" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" QEMU_USER_TARGETS="aarch64" RUBY_TARGETS="ruby31" VIDEO_CARDS="intel" Unset: ADDR2LINE, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ================================================================= Package Settings ================================================================= sci-physics/geant-4.11.1.2-r1::gentoo was built with the following: USE="data -debug -doc examples freetype gdml geant3 hdf5 inventor motif opengl qt5 raytracerx -static-libs -tbb -threads trajectories vtk" ABI_X86="(64)" CFLAGS="-march=core2 -mtune=native -O2 -flto -fuse-linker-plugin -fno-fat-lto-objects -pipe -Wa,-mbranches-within-32B-boundaries" CXXFLAGS="-march=core2 -mtune=native -O2 -flto -fuse-linker-plugin -fno-fat-lto-objects -pipe -Wa,-mbranches-within-32B-boundaries"
Relevant build log snippet: -- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found suitable version "1.14.2", minimum required is "1.8") -- Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Found Python: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter Traceback (most recent call last): File "<string>", line 1, in <module> ModuleNotFoundError: No module named 'mpi4py' CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message): Could NOT find mpi4py (missing: mpi4py_INCLUDE_DIR) Call Stack (most recent call first): /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:600 (_FPHSA_FAILURE_MESSAGE) /usr/lib64/cmake/vtk-9.2/Findmpi4py.cmake:28 (find_package_handle_standard_args) /usr/lib64/cmake/vtk-9.2/VTK-vtk-module-find-packages.cmake:256 (find_package) /usr/lib64/cmake/vtk-9.2/vtk-config.cmake:152 (include) cmake/Modules/G4InterfaceOptions.cmake:73 (find_package) cmake/Modules/G4CMakeMain.cmake:64 (include) CMakeLists.txt:49 (include) Implication: this is missing dependencies. ``` ACCEPT_LICENSE=geant4 emerge --buildpkgonly =sci-physics/geant-4.11.1.2-r1::gentoo ``` -- Checking C++ feature CXXSTDLIB_FILESYSTEM_NATIVE - Success CMake Error at cmake/Modules/G4OptionalComponents.cmake:42 (find_package): Could not find a package configuration file provided by "CLHEP" (requested version 2.4.6.0) with any of the following names: CLHEPConfig.cmake clhep-config.cmake Add the installation prefix of "CLHEP" to CMAKE_PREFIX_PATH or set "CLHEP_DIR" to a directory containing one of the above files. If "CLHEP" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): cmake/Modules/G4CMakeMain.cmake:59 (include) CMakeLists.txt:49 (include) -- Configuring incomplete, errors occurred! Correction: it's missing more than just mpi?
Thanks for the bug report. MPI is only actually used in the examples and tests, so you can safely add -DCMAKE_DISABLE_FIND_PACKGE_MPI=1 or use -DPython_FIND_UNVERSIONED_NAMES=FIRST as workaround to pick up the correct version of Python. That can be done by exporting MYCMAKEARGS='...' emerge geant4. My guess is that since the examples behave as separate projects, there is a mismatch in terms of what the main project and the subprojects are finding. I will add one of the above to the ebuild when bumping it, as a new patch release just came out as well.
As for the other comment, indeed, sci-physics/clhep is a dependency and should have been pulled in automatically. If you have problems with that, it's a separate issue and should be investigated as well.
I have Python 3.11 as default and both 3.12 and 3.13 installed. I built both 4.11.1.3 and 4.11.2.0 and did not hit this issue with either of them, so I will close this as I can't reproduce.
