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Bug 920917 - sci-biology/emboss-6.6.0-r2 - ajreg.c: error: assignment to struct real_pcre from incompatible pointer type pcre {aka struct real_pcre8_or_16 } [-Winc
Summary: sci-biology/emboss-6.6.0-r2 - ajreg.c: error: assignment to struct real_pcre ...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: c99-porting
  Show dependency tree
 
Reported: 2023-12-29 09:21 UTC by Toralf Förster
Modified: 2023-12-29 09:21 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.49 KB, text/plain)
2023-12-29 09:21 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,120.95 KB, text/plain)
2023-12-29 09:21 UTC, Toralf Förster
Details
environment (environment,97.08 KB, text/plain)
2023-12-29 09:21 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.12 KB, application/x-xz)
2023-12-29 09:21 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,17.11 KB, application/x-xz)
2023-12-29 09:21 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,12.48 KB, application/x-xz)
2023-12-29 09:21 UTC, Toralf Förster
Details
qlist-info.txt (qlist-info.txt,206.32 KB, text/plain)
2023-12-29 09:21 UTC, Toralf Förster
Details
sci-biology:emboss-6.6.0-r2:20231229-021617.log (sci-biology:emboss-6.6.0-r2:20231229-021617.log,60.04 KB, text/plain)
2023-12-29 09:21 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,29.59 KB, application/x-xz)
2023-12-29 09:21 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2023-12-29 09:21:01 UTC
too long lines were shrinked:

libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r2/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -marc
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DNO_AUTH   -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r2/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D
/bin/sh ../../libtool  --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.   -DNO_AUTH   -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r2/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r2/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -marc
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r2/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -marc
ajreg.c: In function 'ajRegCompC':
ajreg.c:95:15: error: assignment to 'struct real_pcre *' from incompatible pointer type 'pcre *' {aka 'struct real_pcre8_or_16 *'} [-Wincompatible-pointer-types]
   95 |     ret->pcre = pcre_compile(rexp, options, &errptr, &errpos, tableptr);
      |               ^

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-20231227-054504

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6
Python 3.11.7
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.74.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
3)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.21.5 linux/amd64

  HEAD of ::gentoo
commit 2804c48eed06d348e3f4e93848cc87f905454136
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Dec 29 01:32:03 2023 +0000

    2023-12-29 01:32:02 UTC

emerge -qpvO sci-biology/emboss
[ebuild  N    ] sci-biology/emboss-6.6.0-r2  USE="X pdf png -minimal -mysql -postgres"
Comment 1 Toralf Förster gentoo-dev 2023-12-29 09:21:02 UTC
Created attachment 880898 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-12-29 09:21:03 UTC
Created attachment 880899 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2023-12-29 09:21:05 UTC
Created attachment 880900 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-12-29 09:21:05 UTC
Created attachment 880901 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-12-29 09:21:06 UTC
Created attachment 880902 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2023-12-29 09:21:07 UTC
Created attachment 880903 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2023-12-29 09:21:09 UTC
Created attachment 880904 [details]
qlist-info.txt
Comment 8 Toralf Förster gentoo-dev 2023-12-29 09:21:10 UTC
Created attachment 880905 [details]
sci-biology:emboss-6.6.0-r2:20231229-021617.log
Comment 9 Toralf Förster gentoo-dev 2023-12-29 09:21:11 UTC
Created attachment 880906 [details]
temp.tar.xz