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Bug 919796 - Install failed Updating the @world set
Summary: Install failed Updating the @world set
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-12-12 20:52 UTC by Charles Menser
Modified: 2023-12-12 21:59 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/tmp/portage/dev-libs/libatomic_ops-7.8.0/temp/build.log (config.log,13.75 KB, text/x-log)
2023-12-12 20:52 UTC, Charles Menser
Details

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Description Charles Menser 2023-12-12 20:52:26 UTC
Created attachment 878988 [details]
/var/tmp/portage/dev-libs/libatomic_ops-7.8.0/temp/build.log

When trying to install from the live image, at the "Updating the @world set" step, I ran "emerge --ask --verbose --update --deep --newuse @world" and got the following error:

 * ERROR: dev-libs/libatomic_ops-7.8.0::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  136:  Called src_configure
 *             environment, line 1565:  Called multilib-minimal_src_configure
 *             environment, line 1014:  Called multilib_foreach_abi 'multilib-minimal_abi_src_configure'
 *             environment, line 1264:  Called multibuild_foreach_variant '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure'
 *             environment, line  969:  Called _multibuild_run '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure'
 *             environment, line  967:  Called _multilib_multibuild_wrapper 'multilib-minimal_abi_src_configure'
 *             environment, line  347:  Called multilib-minimal_abi_src_configure
 *             environment, line 1008:  Called multilib_src_configure
 *             environment, line 1484:  Called econf '--enable-shared'
 *        phase-helpers.sh, line  732:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *              die "$@"

(chroot) livecd / # emerge --info '=dev-libs/libatomic_ops-7.8.0::gentoo'
Portage 3.0.51 (python 3.11.5-final-0, default/linux/amd64/17.1/desktop/plasma/systemd/merged-usr, gcc-13, glibc-2.37-r7, 6.1.57-gentoo-x86_64 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.1.57-gentoo-x86_64-x86_64-Intel-R-_Xeon-R-_E-2276M_CPU_@_2.80GHz-with-glibc2.37
KiB Mem:    65587212 total,  56429996 free
KiB Swap:  100663292 total, 100663292 free
Timestamp of repository gentoo: Mon, 11 Dec 2023 18:30:01 +0000
Head commit of repository gentoo: 8f8a0981334e617383172c4b17edbf84c6b9479a
sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.40 p7) 2.40.0
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-lang/perl:             5.38.0-r1::gentoo
dev-lang/python:           3.11.5::gentoo
dev-util/cmake:            3.26.5-r2::gentoo
dev-util/meson:            1.2.3::gentoo
sys-apps/baselayout:       2.14::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          254.5-r1::gentoo
sys-devel/autoconf:        2.71-r6::gentoo
sys-devel/automake:        1.16.5-r1::gentoo
sys-devel/binutils:        2.40-r9::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/gcc:             13.2.1_p20230826::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/make:            4.4.1-r1::gentoo
sys-kernel/linux-headers:  6.1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.37-r7::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 

Binary Repositories:

gentoobinhost
    priority: 1
    sync-uri: https://gentoo.osuosl.org/releases/amd64/binpackages/17.1/x86-64

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -mtune=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d"
CXXFLAGS="-march=native -mtune=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -mtune=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -mtune=native -O2 -pipe"
GENTOO_MIRRORS="http://www.gtlib.gatech.edu/pub/gentoo     rsync://rsync.gtlib.gatech.edu/gentoo     https://mirrors.mit.edu/gentoo-distfiles/     http://mirrors.mit.edu/gentoo-distfiles/     rsync://mirrors.mit.edu/gentoo-distfiles/     https://gentoo.osuosl.org/     http://gentoo.osuosl.org/     https://mirrors.rit.edu/gentoo/     http://mirrors.rit.edu/gentoo/     ftp://mirrors.rit.edu/gentoo/     rsync://mirrors.rit.edu/gentoo/     https://mirror.servaxnet.com/gentoo/     http://mirror.servaxnet.com/gentoo/     http://gentoo-mirror.flux.utah.edu/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac acl acpi activities alsa amd64 bluetooth branding bzip2 cairo cdda cdr cli crypt cups dbus declarative dri dts dvd dvdr encode exif flac fortran gdbm gif gpm gtk gui iconv icu ipv6 jpeg kde kwallet lcms libnotify libtirpc mad mng mp3 mp4 mpeg multilib ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf pipewire plasma png policykit ppds pulseaudio qml qt5 readline screencast sdl seccomp semantic-desktop sound spell ssl startup-notification svg systemd test-rust tiff truetype udev udisks unicode upower usb vorbis vulkan wayland widgets wxwidgets x264 xattr xcb xft xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-12-12 20:55:26 UTC
configure:3896: $? = 1
configure:3916: checking whether the C compiler works
configure:3938: x86_64-pc-linux-gnu-gcc -m32 -mfpmath=sse -march=native -mtune=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: skipping incompatible /usr/lib/gcc/x86_64-pc-linux-gnu/13/libgcc.a when searching for -lgcc
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: cannot find -lgcc: No such file or directory
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: skipping incompatible /usr/lib/gcc/x86_64-pc-linux-gnu/13/libgcc_s.so.1 when searching for libgcc_s.so.1
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: skipping incompatible /usr/lib/gcc/x86_64-pc-linux-gnu/13/libgcc_s.so.1 when searching for libgcc_s.so.1
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: cannot find libgcc_s.so.1: No such file or directory
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: skipping incompatible /usr/lib/gcc/x86_64-pc-linux-gnu/13/libgcc_s.so.1 when searching for libgcc_s.so.1
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: skipping incompatible /usr/lib/gcc/x86_64-pc-linux-gnu/13/libgcc.a when searching for -lgcc
/usr/libexec/gcc/x86_64-pc-linux-gnu/ld: cannot find -lgcc: No such file or directory

Did you download a no-multilib stage3?
Comment 2 Charles Menser 2023-12-12 21:59:16 UTC
I didn't think so, this is what I used:
stage3-amd64-nomultilib-systemd-mergedusr-20231126T163200Z.tar.xz

I was fairly sure I selected the more normal "desktop profile | systemd | merged usr" from the downloads page.

In any case thank you for the pointer to the problem!

I now have stage3-amd64-desktop-systemd-mergedusr-20231210T170356Z.tar.xz and will start again.

Thank you!