Bug 919473 – sci-biology/amap-2.2-r5 - [clang] ./MultiSequenceDag.h: error: no template named binary_function; did you

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2023-12-08 18:34:55 UTC]

      |   ^
./Sequence.h:293:18: note: in implicit copy assignment operator for
      'SafeVector<char>' first required here
  293 |     *(ret->data) = *data;
      |                  ^
In file included from Amap.cc:9:
./MultiSequenceDag.h:329:23: error: no template named 'binary_function'; did you
      mean '__binary_function'?
  329 | class greater_index : binary_function<Column*, Column*, bool> {

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd_clang_merged_usr-20231206-115013

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6+libcxx
Python 3.11.7
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.74.1 *
GENTOO_VM=  CLASSPATH="" JAVA_HOME=""
JAVACFLAGS="" COMPILER=""
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
2)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
*)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21 

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
go version go1.21.4 linux/amd64

  HEAD of ::gentoo
commit e53ad344e10edc5a1b440ac9e50315481e7cdb5f
Author: Repository mirror & CI <[e-mail]>
Date:   Fri Dec 8 17:32:01 2023 +0000

    2023-12-08 17:32:01 UTC

emerge -qpvO sci-biology/amap
[ebuild  N    ] sci-biology/amap-2.2-r5  USE="java"

[Comment 1 Toralf Förster 2023-12-08 18:34:56 UTC]

Created attachment 878408 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2023-12-08 18:34:58 UTC]

Created attachment 878409 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2023-12-08 18:34:59 UTC]

Created attachment 878410 [details]
environment

[Comment 4 Toralf Förster 2023-12-08 18:35:00 UTC]

Created attachment 878411 [details]
etc.clang.tar.xz

[Comment 5 Toralf Förster 2023-12-08 18:35:01 UTC]

Created attachment 878412 [details]
etc.portage.tar.xz

[Comment 6 Toralf Förster 2023-12-08 18:35:02 UTC]

Created attachment 878413 [details]
qlist-info.txt

[Comment 7 Toralf Förster 2023-12-08 18:35:03 UTC]

Created attachment 878414 [details]
sci-biology:amap-2.2-r5:20231208-181014.log

[Comment 8 Toralf Förster 2023-12-08 18:35:04 UTC]

Created attachment 878415 [details]
temp.tar.xz