When trying to emerge beep-media-player-0.9.7-r4, the followig error occurs: >>> emerge (1 of 10) media-sound/beep-media-player-0.9.7-r4 to / !!! Security Violation: A file exists that is not in the manifest. !!! File: files/0.9.7-vorbis-date.patch I attempted to run ebuild digest on the ebuild, but that didn't seem to work. Reproducible: Always Steps to Reproduce: 1. emerge beep-media-player Actual Results: !!! Security Violation: A file exists that is not in the manifest. !!! File: files/0.9.7-vorbis-date.patch Portage 2.0.51.19 (default-linux/x86/2005.0, gcc-3.4.3-20050110, glibc-2.3.5-r0, 2.6.10-gentoo-r6 i686) ================================================================= System uname: 2.6.10-gentoo-r6 i686 Intel(R) Pentium(R) M processor 2.00GHz Gentoo Base System version 1.4.16 Python: dev-lang/python-2.3.5 [2.3.5 (#1, May 2 2005, 03:51:52)] ccache version 2.3 [enabled] dev-lang/python: 2.3.5 sys-apps/sandbox: [Not Present] sys-devel/autoconf: 2.59-r6, 2.13 sys-devel/automake: 1.7.9-r1, 1.8.5-r3, 1.5, 1.4_p6, 1.6.3, 1.9.4 sys-devel/binutils: 2.15.92.0.2-r7 sys-devel/libtool: 1.5.16 virtual/os-headers: 2.6.8.1-r2 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CFLAGS="-O2 -march=pentium-m -fomit-frame-pointer -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share /config /usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/ mozilla/defaults/pref /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/sh are/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/te x/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O2 -march=pentium-m -fomit-frame-pointer -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs autoconfig ccache distlocks fixpackages sandbox sfperms str ict" GENTOO_MIRRORS="http://mirrors.acm.cs.rpi.edu/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/redhat-tools /usr/local/portage /usr/local/bmg-main" SYNC="rsync://acm.cs.rpi.edu/gentoo-portage" USE="x86 X aac alsa apache2 apm avi bash-completion berkdb bitmap-fonts bonobo c airo cdr crypt cups curl divx4linux dvd dvdr eds emboss encode ethereal faad fam ffmpeg flac foomaticdb fortran gdbm gif gimpprint glitz gmail gnome gphoto2 gpm gstreamer gtk gtk2 gtkhtml guile hal howl imagemagick imlib ipv6 ithreads java javamail jpeg junit ldap libg++ libwww mad mikmod mmx mono mozilla mozsvg mp3 mp eg ncurses nls nptl ogg oggvorbis opengl pam pcmcia pdflib perl pic png ppds pyt hon quicktime readline real samba sdl slang sox spell sqlite sse sse2 ssl subver sion tcpd tetex tiff truetype truetype-fonts type1-fonts vorbis win32codecs xine xml xml2 xv xvid zlib userland_GNU kernel_linux libc_glibc" Unset: ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS
Apparently, I had a broken ebuild lying around in my portage overlay which was causing this problem. Deleting it fixed the problem. My apologies.