Bug 896062 – sci-biology/t-coffee-11.00-r3 - io_lib/tree_util.c: error: invalid operands of types long unsigned int and std::nullptr_t to binar

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2023-02-23 17:58:56 UTC]

      | ^
io_lib/tree_util.c: In function 'int treelist2frame(Sequence*, Sequence*)':
io_lib/tree_util.c:6959:1: warning: no return statement in function returning non-void [-Wreturn-type]
 6959 | }
      | ^
io_lib/tree_util.c: In function 'char* graph2cons_d(long unsigned int, int)':
io_lib/tree_util.c:9328:25: error: invalid operands of types 'long unsigned int' and 'std::nullptr_t' to binary 'operator!='
 9328 |       while ((c=rn_c(s))!=NULL)
      |                         ^

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-j5-20230220-110025

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-12 *
clang/llvm (if any):
clang version 15.0.7
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.7
Python 3.10.10
Available Ruby profiles:
  [1]   ruby27 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.18_p10 [openjdk-bin-11]
*)	Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17]
3)	Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17  system-vm

php cli (if any):
  [1]   php7.4
  [2]   php8.0
  [3]   php8.2 *

  HEAD of ::gentoo
commit 598878f4a2e81633801439683d0eb4b2b878f1a3
Author: Repository mirror & CI <[e-mail]>
Date:   Thu Feb 23 04:02:03 2023 +0000

    2023-02-23 04:02:02 UTC

emerge -qpvO sci-biology/t-coffee
[ebuild  N    ] sci-biology/t-coffee-11.00-r3

[Comment 1 Toralf Förster 2023-02-23 17:58:57 UTC]

Created attachment 854122 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2023-02-23 17:58:59 UTC]

Created attachment 854124 [details]
emerge-history.txt.bz2

[Comment 3 Toralf Förster 2023-02-23 17:59:00 UTC]

Created attachment 854126 [details]
environment

[Comment 4 Toralf Förster 2023-02-23 17:59:01 UTC]

Created attachment 854128 [details]
etc.clang.tar.bz2

[Comment 5 Toralf Förster 2023-02-23 17:59:02 UTC]

Created attachment 854130 [details]
etc.portage.tar.bz2

[Comment 6 Toralf Förster 2023-02-23 17:59:03 UTC]

Created attachment 854132 [details]
logs.tar.bz2

[Comment 7 Toralf Förster 2023-02-23 17:59:04 UTC]

Created attachment 854134 [details]
sci-biology:t-coffee-11.00-r3:20230223-070421.log

[Comment 8 Toralf Förster 2023-02-23 17:59:05 UTC]

Created attachment 854136 [details]
temp.tar.bz2