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Bug 890967 - merge-usr, dev-build/cmake, multilib issues
Summary: merge-usr, dev-build/cmake, multilib issues
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Eclasses (show other bugs)
Hardware: All Linux
: Normal normal with 1 vote (vote)
Assignee: Gentoo's Team for Core System packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: usrmerge, usrmerge-fixes
  Show dependency tree
 
Reported: 2023-01-15 18:28 UTC by Fabio Coatti
Modified: 2024-01-14 19:54 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Fabio Coatti 2023-01-15 18:28:35 UTC
I've switched to merge-usr and since then I have issues with some packages that uses cmake. Basically when cmake modules uses find_library() to find libraries, errors like 
/usr/lib/gcc/x86_64-pc-linux-gnu/12/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/librhash.so: error adding symbols: file in wrong format 

happens. Apparently, find_library() is not able to detect properly that the right path should be /usr/lib64 and not /usr/lib

When cmake module can use different strategies to find the libraries there are no problems.

I tested this assumption by inserting a line like this one:
set(CMAKE_FIND_LIBRARY_CUSTOM_LIB_SUFFIX "64")
in a cmake module that showed the error, like FindCurses.cmake and the issue disappeared.

Maybe the cmake.eclass could manage this situation, more or less similarly to what is done here:

    # See bug 689410
    if [[ "${ARCH}" == riscv ]]; then
        echo 'set(CMAKE_FIND_LIBRARY_CUSTOM_LIB_SUFFIX '"${libdir#lib}"' CACHE STRING "library search suffix" FORCE)' >> "${common_config}" || die
    fi

I'm trying to see if I can hack something but I'm not even sure if my diagnosis makes sense or not :)

For reference, see also bug #889822


Reproducible: Always




⌙➤ emerge --info
Portage 3.0.43 (python 3.10.9-final-0, default/linux/amd64/17.1/desktop/plasma/systemd/merged-usr, gcc-12, glibc-2.36-r6, 6.1.4-cova x86_64)
=================================================================
System uname: Linux-6.1.4-cova-x86_64-Intel-R-_Core-TM-_i7-6820HQ_CPU_@_2.70GHz-with-glibc2.36
KiB Mem:    65680168 total,  27419660 free
KiB Swap:    8388604 total,   8388604 free
Timestamp of repository gentoo: Fri, 13 Jan 2023 13:17:10 +0000
Head commit of repository gentoo: 0192ad7514a92beb825796089bf074fec9e5aa16

Head commit of repository kde: 7c376434c3c3100079687360533d1bb7d4324044

Head commit of repository nix-guix: 8189fb79515077c1ccacf5e12688fe1f416ecc3e

sh bash 5.2_p15-r1
ld GNU ld (Gentoo 2.39 p5) 2.39.0
app-misc/pax-utils:        1.3.6-r1::gentoo
app-shells/bash:           5.2_p15-r1::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0-r1::gentoo
dev-lang/python:           3.10.9::gentoo, 3.11.1::gentoo, 3.12.0_alpha3-r1::gentoo
dev-lang/rust:             1.66.1::gentoo
dev-util/cmake:            3.25.1-r1::local
dev-util/meson:            1.0.0::gentoo
sys-apps/baselayout:       2.9::gentoo
sys-apps/sandbox:          2.30-r1::gentoo
sys-apps/systemd:          252.4-r1::gentoo
sys-devel/autoconf:        2.13-r7::gentoo, 2.71-r5::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r4::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           14.0.6-r1::gentoo, 15.0.6::gentoo
sys-devel/gcc:             12.2.1_p20221231::gentoo
sys-devel/gcc-config:      2.10::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/lld:             15.0.6::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo, 15.0.6-r1::gentoo
sys-devel/make:            4.4::gentoo
sys-kernel/linux-headers:  6.1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.36-r6::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/repo/sync/gentoo.git
    priority: -1000
    volatile: True
    sync-git-verify-commit-signature: yes

kde
    location: /var/lib/layman/kde
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/proj/kde.git
    masters: gentoo
    priority: 50
    volatile: True

nix-guix
    location: /var/lib/layman/nix-guix
    sync-type: git
    sync-uri: https://github.com/trofi/nix-guix-gentoo.git
    masters: gentoo
    priority: 50
    volatile: True

local
    location: /usr/overlay
    masters: gentoo
    priority: 51
    volatile: True

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O3 -fgraphite-identity -floop-nest-optimize -ftree-loop-distribution -flto=4 -fuse-linker-plugin -pipe -fpie -fpic -fstack-protector-strong -fstack-clash-protection"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/sddm/scripts/Xsetup"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O3 -fgraphite-identity -floop-nest-optimize -ftree-loop-distribution -flto=4 -fuse-linker-plugin -pipe -fpie -fpic -fstack-protector-strong -fstack-clash-protection"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/"
LANG="en_IE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -march=native -O3 -fgraphite-identity -floop-nest-optimize -ftree-loop-distribution -flto=4 -fuse-linker-plugin -pipe -fpie -fpic -fstack-protector-strong -fstack-clash-protection -Wl,--as-needed -Wl,--hash-style=gnu"
LEX="flex"
LINGUAS="en it de"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native"
SHELL="/bin/bash"
USE="3dnow 3dnowext 3dnowprefetch X \ a52 aac aalib acl acpi activities aim alsa amd64 apng appstream ares asf ati audio audiofile avahi bash-completion bidi bl bluetooth branding bri bzip2 cairo caps cdda cdr cjk cli crypt cups curl dba dbus declarative device-mapper dga divx divx4linux dri dts dv dvb dvd dvdr dvdread eap-sim edl egl encode ethereal evdev exif expat faad fam fame fbcon ffmpeg fftw flac force-cgi-redirect fortran ftp gallium garmin gd gdbm gif gimp gmedia gmp gnutls gphoto2 gpm gps gsm gtk gui h264 h323 iconv icq icu idn ifp ilbc imagemagick imap innodb ipod iproute2 ipv6 ithreads jabber java javascript joystick jpeg kde kontact kvm kwallet lastfm lcms libglvnd libnotify libtirpc libvirtd live lm_sensors lua lvm lxc lzma lzo mad maildir matroska mbox mdnsresponder-compat mhash mime mjpeg mmap mmx mmxext mng mozdevelop mozilla mp3 mp4 mpeg msn mtp multilib mysql ncurses network networkmanager new-hpcups nfsv4 njb nls nptl nptlonly offensive ofx ogg oggvorbis ogm openal openexr opengl openmp oscar pam pango parted pcap pcre pdf phonon php plasma plotutils png policykit ppds pulseaudio qemu qml qt5 readline real rtc ruby samba sasl screencast sdl seccomp semantic-desktop semantic-destkop sha512 sip slang slp smartcard sndfile snmp sound sox speex spell srt sse sse2 ssh ssl ssse3 startup-notification svg systemd tcltk telepathy test-rust theora threads tiff tk touchpad tremor truetype udev udisks unicode upower usb utempter v4l v4l2 vcd vde vhosts video videos vim-syntax virt-network virtualbox vorbis vulkan wav wayland widgets wifi wmf wmp wps wxwidgets wxwindows x264 xanim xattr xcb xface xft xine xinerama xml xosd xpm xscreensaver xsl xv xvid zeroconf zlib zpm" ABI_X86="64 32" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="en it de en_IE" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="X86" LUA_SINGLE_TARGET="luajit" LUA_TARGETS="lua5-1 lua5-4 luajit" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby27 ruby30 ruby31" USERLAND="GNU" VIDEO_CARDS="i965 intel nvidia v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Fabio Coatti 2023-01-15 19:11:40 UTC
I made a quite dirty try, adding those lines to cmake.eclass and the compilation seems to go thru.
I'm pretty sure this is not the right solution, but at least it seems to go in the right direction:
    

    # See bug 890967
    if [[ "${ARCH}" == amd64 ]]; then
        if [[ "${ABI_X86}" == "64" ]]; then
            echo 'set(CMAKE_FIND_LIBRARY_CUSTOM_LIB_SUFFIX '"64"' CACHE STRING "library search suffix" FORCE)' >> "${common_config}" || die
        fi
    fi

(or maybe any other suitable variable instead of ABI_X86)
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-03-31 18:23:55 UTC
(In reply to Fabio Coatti from comment #1)
> I made a quite dirty try, adding those lines to cmake.eclass and the
> compilation seems to go thru.
> I'm pretty sure this is not the right solution, but at least it seems to go
> in the right direction:
>     
> 
>     # See bug 890967
>     if [[ "${ARCH}" == amd64 ]]; then
>         if [[ "${ABI_X86}" == "64" ]]; then
>             echo 'set(CMAKE_FIND_LIBRARY_CUSTOM_LIB_SUFFIX '"64"' CACHE
> STRING "library search suffix" FORCE)' >> "${common_config}" || die
>         fi
>     fi
> 
> (or maybe any other suitable variable instead of ABI_X86)

I think this might still be worth trying, although per https://bugs.gentoo.org/889822#c24, it's clear that *something else* is going on when people hit this kind of issue, and it's not as simple as "CMake obviously doing something wrong".