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Bug 889368 - dev-python/shapely-2.0.0 - AttributeError: module 'versioneer' has no attribute 'get_cmdclass'
Summary: dev-python/shapely-2.0.0 - AttributeError: module 'versioneer' has no attribu...
Status: IN_PROGRESS
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: 3D Printing Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-01-02 10:07 UTC by Martin Mokrejš
Modified: 2023-01-21 11:28 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log.txt,36.99 KB, text/plain)
2023-01-02 12:37 UTC, Martin Mokrejš
Details

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Description Martin Mokrejš 2023-01-02 10:07:30 UTC
First of all, it seems the package should depend on dev-python/colorlog .

Second:

creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/shapely
INFO: x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -ftree-vectorize build/temp.linux-x86_64-cpython-38/shapely/_geos.o -L/usr/lib64 -L/usr/lib64 -lgeos_c -o build/lib.linux-x86_64-cpython-38/shapely/_geos.cpython-38-x86_64-linux-gnu.so
INFO: x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -ftree-vectorize build/temp.linux-x86_64-cpython-38/src/c_api.o build/temp.linux-x86_64-cpython-38/src/coords.o build/temp.linux-x86_64-cpython-38/src/geos.o build/temp.linux-x86_64-cpython-38/src/lib.o build/temp.linux-x86_64-cpython-38/src/pygeom.o build/temp.linux-x86_64-cpython-38/src/strtree.o build/temp.linux-x86_64-cpython-38/src/ufuncs.o build/temp.linux-x86_64-cpython-38/src/vector.o -L/usr/lib64 -L/usr/lib64 -lgeos_c -o build/lib.linux-x86_64-cpython-38/shapely/lib.cpython-38-x86_64-linux-gnu.so
INFO: x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -ftree-vectorize build/temp.linux-x86_64-cpython-38/shapely/_geometry_helpers.o -L/usr/lib64 -L/usr/lib64 -lgeos_c -o build/lib.linux-x86_64-cpython-38/shapely/_geometry_helpers.cpython-38-x86_64-linux-gnu.so
/usr/lib/python3.8/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
  warnings.warn(msg, _BetaConfiguration)
 *   Building the wheel for shapely-2.0.0 via setuptools.build_meta
gpep517 build-wheel --backend setuptools.build_meta --output-fd 3 --wheel-dir /mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/work/shapely-2.0.0-python3_8/wheel
2023-01-02 11:02:57,239 gpep517 INFO Building wheel via backend setuptools.build_meta
INFO: Disabling color, you really want to install colorlog.
2023-01-02 11:02:57,290 pythran INFO Disabling color, you really want to install colorlog.
Traceback (most recent call last):
  File "/usr/lib/python-exec/python3.8/gpep517", line 4, in <module>
    sys.exit(main())
  File "/usr/lib/python3.8/site-packages/gpep517/__main__.py", line 322, in main
    return func(args)
  File "/usr/lib/python3.8/site-packages/gpep517/__main__.py", line 122, in build_wheel
    print(build_wheel_impl(args, args.wheel_dir), file=out)
  File "/usr/lib/python3.8/site-packages/gpep517/__main__.py", line 105, in build_wheel_impl
    wheel_name = backend.build_wheel(str(wheel_dir), args.config_json)
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 413, in build_wheel
    return self._build_with_temp_dir(['bdist_wheel'], '.whl',
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 398, in _build_with_temp_dir
    self.run_setup()
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 335, in run_setup
    exec(code, locals())
  File "<string>", line 207, in <module>
AttributeError: module 'versioneer' has no attribute 'get_cmdclass'
 * ERROR: dev-python/shapely-2.0.0::gentoo failed (compile phase):
 *   Wheel build failed
 * 
 * Call stack:
 *     ebuild.sh, line  136:  Called src_compile
 *   environment, line 3337:  Called distutils-r1_src_compile
 *   environment, line 1541:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 *   environment, line  719:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3038:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2598:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2596:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 1030:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 *   environment, line 1523:  Called distutils-r1_python_compile
 *   environment, line 1344:  Called distutils_pep517_install '/mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/work/shapely-2.0.0-python3_8/install'
 *   environment, line 1858:  Called die
 * The specific snippet of code:
 *       local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed");
 * 
 * If you need support, post the output of `emerge --info '=dev-python/shapely-2.0.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-python/shapely-2.0.0::gentoo'`.
 * The complete build log is located at '/mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/temp/build.log'.
 * The ebuild environment file is located at '/mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/temp/environment'.
 * Working directory: '/mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/work/shapely-2.0.0'
 * S: '/mnt/nocrypt/var/tmp/portage/portage/dev-python/shapely-2.0.0/work/shapely-2.0.0'


# emerge --info '=dev-python/shapely-2.0.0::gentoo'
Portage 3.0.42 (python 3.9.16-final-0, default/linux/amd64/17.1/no-multilib, gcc-12, glibc-2.36-r5, 6.0.5 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.0.5-x86_64-Intel-R-_Core-TM-_i7-7820HQ_CPU_@_2.90GHz-with-glibc2.36
KiB Mem:    32746536 total,   6917528 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 31 Dec 2022 15:30:01 +0000
Head commit of repository gentoo: b54289bccc67b18a452326b75f12b8ddb82d6673
Head commit of repository randall: 1878db2875a45dfa0a8c37a1f38035da7deb5cbc

sh bash 5.2_p15
ld GNU ld (Gentoo 2.39 p5) 2.39.0
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.2_p15::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0::gentoo
dev-lang/python:           2.7.18_p108::stefantalpalaru, 3.8.16::gentoo, 3.9.16::gentoo
dev-lang/rust:             1.64.0-r1::gentoo
dev-util/cmake:            3.25.1::gentoo
dev-util/meson:            0.63.2-r1::gentoo
sys-apps/baselayout:       2.9::gentoo
sys-apps/openrc:           0.45.2-r2::gentoo
sys-apps/sandbox:          2.30-r1::gentoo
sys-devel/autoconf:        2.13-r7::gentoo, 2.69-r5::gentoo, 2.71-r5::gentoo
sys-devel/automake:        1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16.5::gentoo
sys-devel/binutils:        2.39-r4::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           13.0.1::gentoo, 14.0.6-r1::gentoo, 15.0.3::gentoo
sys-devel/gcc:             9.3.0-r2::gentoo, 10.3.0::gentoo, 11.3.0::gentoo, 12.2.1_p20221224::gentoo
sys-devel/gcc-config:      2.9::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/lld:             14.0.6-r1::gentoo
sys-devel/llvm:            13.0.1::gentoo, 14.0.6-r2::gentoo, 15.0.3::gentoo
sys-devel/make:            4.4::gentoo
sys-kernel/linux-headers:  6.1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.36-r5::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: True
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24

randall
    location: /var/db/repos/randall
    sync-type: git
    sync-uri: https://github.com/ran-dall/portage-overlay
    masters: gentoo
    volatile: True

science
    location: /mnt/large/home/mmokrejs/proj/sci
    masters: gentoo
    priority: 0
    volatile: True

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 1
    volatile: True

layman
    location: /var/lib/layman
    masters: gentoo
    priority: 2
    volatile: True

stefantalpalaru
    location: /var/lib/layman/stefantalpalaru
    masters: gentoo
    priority: 50
    volatile: True

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 NPSL Nero-EULA-US AdobeFlash-10.3 AdobeFlash-11.x OPERA-2014 RAR Intel-SDP intel-ucode Skype-TOS vmware linux-firmware fasta vienna-rna unafold GRL MSttfEULA hplip-plugin meme mRNAmarkup ApE ICS ipw3945 finchtv modeller gmap master-pdf-editor abyss swiss-prot Aladdin AVASYS truecrypt-3.0 pyvcf Non-profit-OSL-3.0 estscan bcca_2010 oncotator Adobe blat staden CeCILL-1.1 phrap STRIDE cctbx-2.0 bh-luxi ARIADNE unRAR all-rights-reserved trf annovar_personal_only stampy-academic BSD-BroadInstitute UPennState freedist free-noncomm blasr sun-jlfgr FLI-Jena PSTT netperf sun-jsr67 xv vim.org OSGi-Specification-2.0 colt mod_fastcgi googleearth google-chrome ACE AFL churchill genscan no-source-code linux-fw-redistributable ISSL JSON MPEG-4 Apache-2.0 BSD MIT BSD-2 FSFAP unicode Subversion OPERA-2018 ms-teams-pre TeamViewer PSF-2.4 merlin android julius CROSSOVER-3 lha PUEL-11"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf /usr/share/maven-bin-3.6/conf /usr/share/maven-bin-3.8/conf /var/lib/hsqldb /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.0/ext-active/ /etc/php/apache2-php8.1/ext-active/ /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php8.0/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php8.0/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
CXXFLAGS="-O2 -pipe -march=native -ftree-vectorize"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe -march=native -ftree-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news nostrip parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=native -ftree-vectorize"
GENTOO_MIRRORS="http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LANG="en_US"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
LINGUAS="en_US en_GB en cs"
MAKEOPTS="-j5"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/mnt/nocrypt/var/tmp/portage"
SHELL="/bin/bash"
USE="X aac acl acpi alsa amd64 amr amrenc apache apache2 armadillo asm avx avx2 berkdb bluetooth bmp boost bzip2 cairo caps cdda cdio cdr cgi chromium cli codec2 coin cpudetection cracklib crypt cryptlib cryptsetup cups dav1d dbus device-mapper dhcp directfb dri dri3 drm dvd dvda dxf elogind emboss encode eselect-ldso eudev exif fax fbcon fdk ffmpeg flac fontconfig fortran gbm gcrypt gd gdbm geoip geolocation gimp glpk gmp gnutls gpm gps gtk hal haptic heif hpijs hwdb iconv id3tag imaging innodb inotify iproute2 java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack laptop lcms libaom libdrm libglvnd libnotify librtmp libsoxr libtesseract libtirpc libv4l libxml2 lm_sensors lz4 lzma mad mariadb matroska mmal mmx modemmanager mp3 ncurses networkmanager nfs nls nptl nptlonly nscd nss ntfsprogs objc ocr ogg opengl openh264 openmp openssl opus pam parport pbs pcre pcre16 pcsc-lite pdf perl php png policykit polkit ppds pppd python qt3support qt4 qt5 rav1e readline rendering resolvconf romio rubberband scanner sctp seccomp server session sha slideshow smartcard sndfile sndio split-usr sqlite srt sse sse2 sse3 sse4_1 sse4_2 ssh ssl sslv3 ssse3 startup-notification suexec svg svt-av1 syslog tcl tcpd test-rust threads tiff tk tools truetype twolame udev unicode usb v4l v4l2 vaapi vidstab vim-syntax virtualbox vmaf vnc vorbis vpx wavpack wayland webp wifi x11 x264 x265 xattr xcb xft xml xmp xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ADA_TARGET="gnat_2021" ALSA_CARDS="hdspm usb-usx2y" APACHE2_MODULES="alias authn_core authz_core socache_shmcb authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic unixd" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="gpsclock navcom ntrip rtcm104v2 rtcm104v3 ublox nmea0183 nmea2000 aivdm passthrough" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en-US en-GB en cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" OPENMPI_RM="pbs" PHP_TARGETS="php5-4 php5-5" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python2_7 python3_8 python3_9" RUBY_TARGETS="ruby23 ruby24 ruby25 ruby27 ruby30 ruby31" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915 i965 iris" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Martin Mokrejš 2023-01-02 12:37:03 UTC
Created attachment 846552 [details]
build.log
Comment 2 alex Mezey 2023-01-21 10:34:03 UTC
emerge -1 dev-python/versioneer

updating versioneer from 0.22 to 0.28 fixed it for me.

It looks like the dependency is missingA I don't know whether it's a bug in this ebuild or if it's recursive.
It might also be the old version of versioneer was broken due to another update or unsuable because of an obsolete python slot. I can't check that anymore. Anyways it should be built first.
Comment 3 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2023-01-21 11:23:50 UTC
I think the sys.path order is wrong upstream.  I'll try to reproduce and make a PR.